Chapter 20 Smith Small Mammal Control
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Arvicolinae and Outgroup Mitochondrial Genome Accession Numbers
Supplementary Materials: Table S1: Arvicolinae and outgroup mitochondrial genome accession numbers. Species Name Accession Number Lasiopodomys brandtii MN614478.1 Lasiopodomys mandarinus JX014233.1 Lasiopodomys gregalis MN199169.1 Microtus fortis fortis JF261174.1 Microtus fortis calamorum JF261175.1 Microtus kikuchii AF348082.1 Neodon irene NC016055.1 Neodon fuscus MG833880.1 Neodon sikimensis KU891252.1 Microtus rossiaemeridionalis DQ015676.1 Microtus levis NC008064.1 Microtus arvalis MG948434.1 Terricola subterraneus MN326850.1 Microtus agrestis MH152570.1 Microtus richardsoni MT225016.1 Microtus ochrogaster KT166982.1 Proedromys liangshanensis FJ463038.1 Arvicola amphibius MN122828.1 Myodes regulus NC016427.1 Myodes rufocanus KT725595.1 Myodes rutilus MK482363.1 Myodes glareolus KF918859.1 Eothenomys melanogaster KP997311.1 Eothenomys miletus KX014874.1 Eothenomys chinensis FJ483847.1 Eothenomys Inez KU200225.1 Ondatra zibethicus KU177045.1 Dicrostonyx hudsonius KX683880.1 Dicrostonyx groenlandicus KX712239.1 Dicrostonyx torquatus MN792940.1 Prometheomys schaposchnikowi NC049036.1 Cricetulus griseus DQ390542.2 Peromyscus polionotus KY707301.1 Sigmodon hispidus KY707311.1 Mus musculus V00711.1 Table S2: Sequenced Wildwood Trust water vole samples. Sample Sample Enclosure Local ID Sex No. Type No. 1 Tissue TB31 - - 2 Tissue WW46 - - 3 Tissue WW0304/34 - Male 4 Tissue WW34/39 - - 5 Hair Q88 - Male 6 Hair Q100 - Male 7 Hair R95 - Male 8 Hair R12 - Male 9 Hair R28 - Male 10 Hair Q100 - Male 11 Faecal R2 2228 Male 12 Faecal Q52 2245 Female 13 Faecal Q42 2218 Female 14 Faecal Q7 2264 Female 15 Faecal Q75a 2326 Female 16 Faecal R50 2232 Male 17 Faecal R51 2225 Male 18 Faecal Q58 2314 Male 19 Faecal Q100 2185 Female 20 Faecal R27 2445 Female Table S3: Additional water vole sequences from previous publications. -
Tissue Specific Regulatory Network Annotation for Non-Coding Elements
Quantitative Biology 2020, 8(1): 43–50 https://doi.org/10.1007/s40484-020-0195-4 RESEARCH ARTICLE ZokorDB: tissue specificregulatorynetwork annotation for non-coding elements of plateau zokor Jingxue Xin1,6,7,†, Junjun Hao2,†, Lang Chen1, Tao Zhang3, Lei Li1,5,7, Luonan Chen3,5, Wenmin Zhao4, Xuemei Lu2,5, Peng Shi2,5,*, Yong Wang1,5,7,* 1 CEMS, NCMIS, MDIS, Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China 2 State Key Laboratory of Genetic Resources and Evolution, Laboratory of Evolutionary and Functional Genomics, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China 3 Key Laboratory of Systems Biology, Innovation Center for Cell Signaling Network, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China 4 Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China 5 Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming 650223, China 6 Department of Statistics, Department of Biomedical Data Science, Bio-X Program, Stanford University, Stanford, CA 94305, USA 7 University of Chinese Academy of Sciences, Beijing 100049, China * Correspondence: [email protected], [email protected] Received September 4, 2019; Revised December 16, 2019; Accepted December 23, 2019 Background: Plateau zokor inhabits in sealed burrows from 2,000 to 4,200 meters at Qinghai-Tibet Plateau. This extreme living environment makes it a great model to study animal adaptation to hypoxia, low temperature, and high carbon dioxide concentration. Methods: We provide an integrated resource, ZokorDB, for tissue specific regulatory network annotation for zokor. -
Oxytocin and Vasopressin Immunoreactive Staining in the Brains of Brandt's Voles (Lasiopodomys Brandtii) and Greater Long-Ta
Neuroscience 169 (2010) 1235–1247 OXYTOCIN AND VASOPRESSIN IMMUNOREACTIVE STAINING IN THE BRAINS OF BRANDT’S VOLES (LASIOPODOMYS BRANDTII) AND GREATER LONG-TAILED HAMSTERS (TSCHERSKIA TRITON) L. XU,a Y. PAN,a K. A. YOUNG,b Z. WANGb neural mechanisms. Using a comparative approach, re- AND Z. ZHANGa* markable differences have been found in several types of aState Key Laboratory of Integrated Management of Pest Insects and social behaviors, and these differences, when grouped Rodents in Agriculture, Institute of Zoology, Chinese Academy of together, constitute general life strategies. Species that Sciences, Datun Road, Chaoyang District, Beijing 100101, PR China follow a monogamous life strategy, for example, usually bDepartment of Psychology and Program in Neuroscience, Florida exhibit high levels of social affiliation among individuals, State University, Tallahassee, FL 32306, USA biparental care for their offspring, and selective aggression towards unfamiliar conspecifics (Kleiman, 1977; Dews- Abstract—Immunoreactive (ir) staining of the neuropeptides bury, 1987). In contrast, non-monogamous species tend to oxytocin (OT) and vasopressin (AVP) was performed in the be solitary, less affiliative, and more aggressive. Such brains of Brandt’s voles (Lasiopodomys brandtii) and greater species differences in behavior may reflect evolutionary long-tailed hamsters (Tscherskia triton)—two species that differ pressure and/or a specific adaptation to the environment. remarkably in social behaviors. Social Brandt’s voles had In addition, such differences may indicate potential under- higher densities of OT-ir cells in the medial preoptic area (MPOA) and medial amygdala (MeA) as well as higher densities lying species differences in the central nervous system. of AVP-ir cells in the lateral hypothalamus (LH) compared to Several elegant rodent models have been developed solitary greater long-tailed hamsters. -
Small Mammal Fauna in Europe During the Second Half of the Middle Pleistocene
FOSSIL IMPRINT • vol. 73 • 2017 • no. 1–2 • pp. 48–66 (formerly ACTA MUSEI NATIONALIS PRAGAE, Series B – Historia Naturalis) SMALL MAMMAL FAUNA IN EUROPE DURING THE SECOND HALF OF THE MIDDLE PLEISTOCENE ANASTASIA K. MARKOVA1,*, ANDREY YU. PUZACHENKO1 1 Institute of Geography, Russian Academy of Sciences, Staromonetnyi per. 29, 109017 Moscow, Russia; e-mail: [email protected], [email protected]. * corresponding author Markova, A. K., Puzachenko, A. Yu. (2017): Small mammal fauna in Europe during the second half of the Middle Pleistocene. – Fossil Imprint, 73(1-2): 48–66, Praha. ISSN 2533-4050 (print), ISSN 2533-4069 (on-line). Abstract: Evolutionary changes in European small mammals during the second half of the Middle Pleistocene, from the Likhvin (Holsteinian, Hoxnian) Interglacial (MIS 11) to the beginning of the Mikulino (Eemian) Interglacial (MIS 5e), that is between 424 ka BP and 130 ka BP were traced. Trends in evolutionary change were documented, and East European and West European faunas were compared. An integrated analysis of available theriological, geological, and geochronological data for the second half of the Middle Pleistocene in Europe has shown marked changes in the small mammal fauna throughout the period under consideration and provided information on the climate and environments at different time intervals. Changes traceable in the Arvicolinae phyletic lines made a correlation between the West European and East European mammal localities possible. The biostratigraphic scheme of the second half of the Middle Pleistocene has been developed and maps of small mammal localities compiled. Key words: small mammals, second half of the Middle Pleistocene, Europe, taxonomy, evolution, stratigraphy, correlation Received: January 20, 2017 | Accepted: April 18, 2017 | Issued: August 15, 2017 Introduction faunas and their evolutionary changes will be discussed. -
Lasiopodomys Fuscus As an Important Intermediate Host for Echinococcus
Cai et al. Infectious Diseases of Poverty (2018) 7:27 https://doi.org/10.1186/s40249-018-0409-4 RESEARCH ARTICLE Open Access Lasiopodomys fuscus as an important intermediate host for Echinococcus multilocularis: isolation and phylogenetic identification of the parasite Qi-Gang Cai1,2†, Xiu-Min Han3†, Yong-Hai Yang4, Xue-Yong Zhang2, Li-Qing Ma2, Panagiotis Karanis2 and Yong-Hao Hu1* Abstract Background: Echinococcus multilocularis causes alveolar echinococcosis (AE) and is widely prevalent in Qinghai Province, China, where a number of different species have been identified as hosts. However, limited information is available on the Qinghai vole (Lasiopodomys fuscus), which is hyper endemic to Qinghai Province and may represent a potential intermediate host of E. multilocularis.Thus,L. fuscus could contribute to the endemicity of AE in the area. Methods: Fifty Qinghai voles were captured from Jigzhi County in Qinghai Province for the clinical identification of E. multilocularis infection via anatomical examination. Hydatid fluid was collected from vesicles of the livers in suspected voles and subjected to a microscopic examination and PCR assay based on the barcoding gene of cox 1.PCR-amplified segments were sequenced for a phylogenetic analysis. E. multilocularis-infected Qinghai voles were morphologically identified and subjected to a phylogenetic analysis to confirm their identities. Results: Seventeen of the 50 Qinghai voles had E. multilocularis-infection-like vesicles in their livers. Eleven out of the 17 Qinghai voles presented E. multilocularis infection, which was detected by PCR and sequencing. The phylogenetic analysis showed that all 11 positive samples belonged to the E. multilocularis Asian genotype. A morphological identification and phylogenetic analysis of the E. -
Sex Chromosome Translocations
RESEARCH ARTICLE Rapid Karyotype Evolution in Lasiopodomys Involved at Least Two Autosome ± Sex Chromosome Translocations Olga L. Gladkikh1☯, Svetlana A. Romanenko1,2☯*, Natalya A. Lemskaya1, Natalya A. Serdyukova1, Patricia C. M. O'Brien3, Julia M. Kovalskaya4, Antonina V. Smorkatcheva5, Feodor N. Golenishchev6, Polina L. Perelman1,2, Vladimir A. Trifonov1,2, Malcolm A. Ferguson-Smith3, Fengtang Yang7, Alexander S. Graphodatsky1,2 a11111 1 Institute of Molecular and Cellular Biology, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia, 2 Novosibirsk State University, Novosibirsk, Russia, 3 Cambridge Resource Centre for Comparative Genomics, Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom, 4 Severtzov Institute of Ecology and Evolution, Russian Academy of Sciences, Moscow, Russia, 5 Department of Vertebrate Zoology, Saint Petersburg State University, Saint Petersburg, Russia, 6 Zoological Institute, Russian Academy of Sciences, Saint Petersburg, Russia, 7 Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdom ☯ These authors contributed equally to this work. OPEN ACCESS * [email protected] Citation: Gladkikh OL, Romanenko SA, Lemskaya NA, Serdyukova NA, O'Brien PCM, Kovalskaya JM, et al. (2016) Rapid Karyotype Evolution in Abstract Lasiopodomys Involved at Least Two Autosome ± Sex Chromosome Translocations. PLoS ONE 11 The generic status of Lasiopodomys and its division into subgenera Lasiopodomys (L. man- (12): e0167653. doi:10.1371/journal. pone.0167653 darinus, L. brandtii) and Stenocranius (L. gregalis, L. raddei) are not generally accepted because of contradictions between the morphological and molecular data. To obtain cyto- Editor: Igor V. Sharakhov, Virginia Tech, UNITED STATES genetic evidence for the Lasiopodomys genus and its subgenera and to test the autosome to sex chromosome translocation hypothesis of sex chromosome complex origin in L. -
Table of Contents Plenary Talks Form and Function
Table of Contents Preface Jens Jacob, Jana Eccard Plenary Talks Predator - prey interaction in the boreal vole community - behavioral and survival game in the changing world 30 Hannu Ylönen Rat-free New Zealand 2050 - fantasy or reality? 31 James G. Ross, Elaine C Murphy, Oscar Pollard, AI Bramley 5 critical areas for rodent population biology 32 Charles J. Krebs The ecology of emerging tick-borne diseases in a changing world 33 Richards. Ostfeld Responses to human-induced changes - ecological and genomic drivers of wildlife health 34 Simone Sommer Form and Function____________________________________________ Changing invaders: the evolution of alien rodents on islands 35 Alexandra A.E. van der Geer, Mark V. Lomolino Body size and craniometry of the herb field mouse in the context of a geographical dines 36 Linas Balciauskas, Albina Amshokova, Laima Balciauskiene, Ana Maria Benedek, Jan Cichocki Evolving teeth within a stable masticatory apparatus in Orkney mice 37 Sabrina Renaud, Ronan Ledevin, Louise Souquet, Helder Gomes Rodrigues, Samuel Ginot, Sylvie Agret, Julien Claude, Anthony Herrel, Lionel Hautier A morphometric mapping analysis of mice molar morphology 38 Wataru Morita, Naoki Morimoto, Hayato Ohshima, Jukka Jernvall Functional morphology of the cochlea of the laminate-toothed rats (family: Muridae, subfamily: Otomyinae) 39 Aluwani Nengovhela, Peter J. Taylor, Christiane Denys, Jose Braga Torpor in dwarf hamsters, Phodopus campbelli and Phodopus roborovskii: a comparative study 40 Anastasia M. Khrushchova, Nina Yu. Vasilieva, Olga N. Shekarova, Konstantin A. Rogovin, Dmitry V. Petrovski Seasonal features of humoral immune response to T-cell dependent antigen in palaearctic hamsters ( Rodentia, Cricetinae) 41 Ekaterina V. Kuznetsova, Natalia Tikhonova, Natalia Yu Feoktistova Penial and bacular morphology of mammals - what it can reveal about their owner? 42 Sylvie Horakova, Jan Robovsky Body weight regulation in small rodents a matter between predation risk and starvation? 43 Rita I. -
Hystrx It. J. Mamm. (Ns) Supp. (2007) V European Congress of Mammalogy
Hystrx It. J. Mamm . (n.s.) Supp. (2007) V European Congress of Mammalogy RODENTS AND LAGOMORPHS 51 Hystrx It. J. Mamm . (n.s.) Supp. (2007) V European Congress of Mammalogy 52 Hystrx It. J. Mamm . (n.s.) Supp. (2007) V European Congress of Mammalogy A COMPARATIVE GEOMETRIC MORPHOMETRIC ANALYSIS OF NON-GEOGRAPHIC VARIATION IN TWO SPECIES OF MURID RODENTS, AETHOMYS INEPTUS FROM SOUTH AFRICA AND ARVICANTHIS NILOTICUS FROM SUDAN EITIMAD H. ABDEL-RAHMAN 1, CHRISTIAN T. CHIMIMBA, PETER J. TAYLOR, GIANCARLO CONTRAFATTO, JENNIFER M. LAMB 1 Sudan Natural History Museum, Faculty of Science, University of Khartoum P. O. Box 321 Khartoum, Sudan Non-geographic morphometric variation particularly at the level of sexual dimorphism and age variation has been extensively documented in many organisms including rodents, and is useful for establishing whether to analyse sexes separately or together and for selecting adult specimens to consider for subsequent data recording and analysis. However, such studies have largely been based on linear measurement-based traditional morphometric analyses that mainly focus on the partitioning of overall size- rather than shape-related morphological variation. Nevertheless, recent advances in unit-free, landmark/outline-based geometric morphometric analyses offer a new tool to assess shape-related morphological variation. In the present study, we used geometric morphometric analysis to comparatively evaluate non-geographic variation in two geographically disparate murid rodent species, Aethmoys ineptus from South Africa and Arvicanthis niloticus from Sudan , the results of which are also compared with previously published results based on traditional morphometric data. Our results show that while the results of the traditional morphometric analyses of both species were congruent, they were not sensitive enough to detect some signals of non-geographic morphological variation. -
Ecologically-Based Management of Rodent Pests ECOLOGICALL V-BASED MANAGEMENT of RODENT PESTS
Ecologically-based Management of Rodent Pests ECOLOGICALL V-BASED MANAGEMENT OF RODENT PESTS Edited by: Grant R. Singleton, Lyn A. Hinds, Herwig Leirs and Zhibin Zhang Australian Centre for International Agricultural Research Canberra 1999 The Australian Centre for International Agricultural Research (ACIAR) was established in June 1982 by an Act of the Australian Parliament. Its primary mandate is to help identify agricultural problems in developing countries and to commission collaborative research between Australian and developing country researchers in fields where Australia has special competence. Where trade names are used this constitutes neither endorsement of nor discrimination against any product by the Centre. ACIAR MONOGRAPH SERIES This peer-reviewed series contains the results of original research supported by ACIAR, or deemed relevant to ACIAR's research objectives. The series is distributed internationally, with an emphasis on the Third World ©Australian Centre for International Agricultural Research GPO Box Canberra, ACT 2601. Singleton, C.R., Hinds, L.A., Leirs, H. and Zhang, Z.ed. 1999. Ecologically-based management of rodent ACIAR Monograph No. 59, 494p. ISBN 1 86320 262 5 Editing and design by Arawang Communication Croup, Canberra Printed by Brown Prior Anderson, Melbourne, Australia page Author Contact Details 8 Abbreviations 12 List of Species 13 Preface 15 1. Ecologically-based Management of Rodent Pests-Re-evaluating 17 Our Approach to an Old Problem Grant R. Singleton, Herwig Leirs, Lyn A. Hinds and Zhibin Zhang Section 1 Basic Research - the Foundation for Sound Management 31 2. Current Paradigms of Rodent Population Dynamics- 33 What Are We Missing? Charles J. Krebs 3. The Behaviour and Ecology of Rattus norvegicus: from Opportunism to 49 Kamikaze Tendencies David W. -
Diversity of Late Neogene–Pleistocene Small Mammals of the Baikalian Region and Implications for Paleoenvironment and Biostratigraphy: an Overview
ARTICLE IN PRESS Quaternary International 179 (2008) 190–195 Diversity of Late Neogene–Pleistocene small mammals of the Baikalian region and implications for paleoenvironment and biostratigraphy: An overview Nadezhda V. Alexeeva, Margarita A. Erbajevaà Geological Institute, Siberian Branch of Russian Academy of Sciences, Sahianova Street 6a, 670047 Ulan-Ude, Russia Available online 22 October 2007 Abstract Gradual cooling in the Northern latitudes and intensive orogenic processes led to a prominent environmental change in Eurasia during the Pliocene. The climate changed towards arid and cool conditions. This resulted in a significant reorganization of the biogeocenosis of the Baikalian region. Several open landscape dwellers appeared in mammal faunas. The diverse small mammal species are characteristic of the faunas of Transbaikalia and Prebaikalia. However, the Prebaikalian fauna slightly differs from Transbaikalian one as it includes some peculiar species. Further trends of gradual climatic changes led to significant differences in the biota of these two regions that continue to exist at present. r 2007 Published by Elsevier Ltd. 1. Introduction environments and climatic conditions determine a high diversity of faunal associations and plant communities. The Baikalian region includes the territories of Pre- At present, the vast territory of Prebaikalia is occupied baikalia and Western Transbaikalia, respectively, located mainly by dense conifer forest, although steppe, meadow westwards and eastwards of Lake Baikal. These territories and swampy areas are present as well. The most abundant stretch from 471Nto591N and 1021E to 1141E(Fig. 1). and diverse taxa in Prebaikalian fauna are forest inhabi- Prebaikalia is situated on the south-eastern borderland of tants some of which are widely distributed in the adjacent the Siberian platform, one of the stable blocks of the areas; steppe, and dry steppe, meadow species inhabit Asiatic continent, while Western Transbaikalia is a part of restricted areas (Lyamkin, 1994). -
Contributions to the Mammalogy of Mongolia, with a Checklist of Species for the Country David S
University of New Mexico UNM Digital Repository Special Publications Museum of Southwestern Biology 12-5-2002 Contributions to the Mammalogy of Mongolia, with a Checklist of Species for the Country David S. Tinnin Jonathan L. Dunnum Jorge Salazar-Bravo Nyamsuren Batsaikhan M. Scott urB t See next page for additional authors Follow this and additional works at: https://digitalrepository.unm.edu/msb_special_publications Recommended Citation Tinnin, David S.; Jonathan L. Dunnum; Jorge Salazar-Bravo; Nyamsuren Batsaikhan; M. Scott urB t; Scott L. Gardner; and Terry L. Yates. "Contributions to the Mammalogy of Mongolia, with a Checklist of Species for the Country." (2002). https://digitalrepository.unm.edu/msb_special_publications/10 This Article is brought to you for free and open access by the Museum of Southwestern Biology at UNM Digital Repository. It has been accepted for inclusion in Special Publications by an authorized administrator of UNM Digital Repository. For more information, please contact [email protected]. Authors David S. Tinnin, Jonathan L. Dunnum, Jorge Salazar-Bravo, Nyamsuren Batsaikhan, M. Scott urB t, Scott L. Gardner, and Terry L. Yates This article is available at UNM Digital Repository: https://digitalrepository.unm.edu/msb_special_publications/10 SPECIAL PUBLICATION THE MUSEUM OF SOUTHWESTERN BIOLOGY NUMBER 6, pp. 1-38 5 DECEMBER 2002 Contributions to the Mammalogy of Mongolia, with a Checklist of Species for the Country David S. Tinnin, Jonathan L. Dunnum, Jorge Salazar-Bravo, Nyamsuren Batsaikhan, M. Scott Burt, Scott -
Preliminary Analysis of European Small Mammal Faunas of the Eemian Interglacial: Species Composition and Species Diversity at a Regional Scale
Article Preliminary Analysis of European Small Mammal Faunas of the Eemian Interglacial: Species Composition and Species Diversity at a Regional Scale Anastasia Markova * and Andrey Puzachenko Institute of Geography, Russian Academy of Sciences, Staromonetny 29, Moscow 119017, Russia; [email protected] * Correspondence: [email protected]; Tel.: +7-495-959-0016 Academic Editors: Maria Rita Palombo and Valentí Rull Received: 22 May 2018; Accepted: 20 July 2018; Published: 26 July 2018 Abstract: Small mammal remains obtained from the European localities dated to the Eemian (Mikulino) age have been analyzed for the first time at a regional scale based on the present biogeographical regionalization of Europe. The regional faunas dated to the warm interval in the first part of the Late Pleistocene display notable differences in fauna composition, species richness, and diversity indices. The classification of regional faunal assemblages revealed distinctive features of small mammal faunas in Eastern and Western Europe during the Eemian (=Mikulino, =Ipswichian) Interglacial. Faunas of the Iberian Peninsula, Apennine Peninsula, and Sardinia Island appear to deviate from the other regions. In the Eemian Interglacial, the maximum species richness of small mammals (≥40 species) with a relatively high proportion of typical forest species was recorded in Western and Central Europe and in the western part of Eastern Europe. The lowest species richness (5–14 species) was typical of island faunas and of those in the north of Eastern Europe. The data obtained make it possible to reconstruct the distribution of forest biotopes and open habitats (forest-steppe and steppe) in various regions of Europe. Noteworthy is a limited area of forests in the south and in the northeastern part of Europe.