Coreopsis Palmata Nutt
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
"National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary."
Intro 1996 National List of Vascular Plant Species That Occur in Wetlands The Fish and Wildlife Service has prepared a National List of Vascular Plant Species That Occur in Wetlands: 1996 National Summary (1996 National List). The 1996 National List is a draft revision of the National List of Plant Species That Occur in Wetlands: 1988 National Summary (Reed 1988) (1988 National List). The 1996 National List is provided to encourage additional public review and comments on the draft regional wetland indicator assignments. The 1996 National List reflects a significant amount of new information that has become available since 1988 on the wetland affinity of vascular plants. This new information has resulted from the extensive use of the 1988 National List in the field by individuals involved in wetland and other resource inventories, wetland identification and delineation, and wetland research. Interim Regional Interagency Review Panel (Regional Panel) changes in indicator status as well as additions and deletions to the 1988 National List were documented in Regional supplements. The National List was originally developed as an appendix to the Classification of Wetlands and Deepwater Habitats of the United States (Cowardin et al.1979) to aid in the consistent application of this classification system for wetlands in the field.. The 1996 National List also was developed to aid in determining the presence of hydrophytic vegetation in the Clean Water Act Section 404 wetland regulatory program and in the implementation of the swampbuster provisions of the Food Security Act. While not required by law or regulation, the Fish and Wildlife Service is making the 1996 National List available for review and comment. -
Revised and Recirculated) Biological Resources
Section 4..2 (Revised and Recirculated) Biological Resources Note to reader: The County of San Bernardino has previously circulated for public review and comment the March 25, 2010, Draft Environmental Impact Report on the proposed Deep Creek project. Since the close of the public comment period for that DEIR, the County has made changes to Section 4.2, Biological Resources, of the DEIR. This revised Section 4.2 supersedes and replaces Section 4.2, Biological Resources, which was included in the March 25, 2010, DEIR. The County has elected to recirculate the revised Section 4.2 for public review and comment. Pursuant to Section 15088.5(c) of the CEQA Guidelines (California Code of Regulations, Title 14, Chapter 3), only Section 4.2 of the DEIR is being recirculated. Pursuant to Section 15088.5(f)(2) of the CEQA Guidelines, the County (i) is requesting that reviewers limit their comments to the revised Section 4.2, (ii) will respond to previously submitted comments on all portions of the previously circulated DEIR, except those made with respect to the now-superseded Section 4.2, and (iii) will respond to comments made during the recirculation period to the revised Section 4.2. Additionally, certain issues have previously been adjudicated, such as the evaluation and mitigation of potential impacts to the California desert tortoise and Mohave ground squirrel, and ultimately may be determined by the courts not to be subject to additional judicial review. 4.2 BIOLOGICAL RESOURCES This section evaluates the potential impacts on biological resources resulting from the implementation of the project. -
Barcoding the Asteraceae of Tennessee, Tribe Coreopsideae
Schilling, E.E., N. Mattson, and A. Floden. 2014. Barcoding the Asteraceae of Tennessee, tribe Coreopsideae. Phytoneuron 2014-101: 1–6. Published 20 October 2014. ISSN 2153 733X BARCODING THE ASTERACEAE OF TENNESSEE, TRIBE COREOPSIDEAE EDWARD E. SCHILLING, NICHOLAS MATTSON, AARON FLODEN Herbarium TENN Department of Ecology & Evolutionary Biology University of Tennessee Knoxville, Tennessee 37996 [email protected]; [email protected] ABSTRACT Results from barcoding studies of tribe Coreopsideae for the Tennessee flora using the nuclear ribosomal ITS marker are presented and include the first complete reports for 2 of the 20 species of the tribe that occur in the state, as well as updated reports for several others. Sequence data from the ITS region separate most of the species of Bidens in Tennessee from one another, but species of Coreopsis, especially those of sect. Coreopsis, have ITS sequences that are identical (or nearly so) to at least one congener. Comparisons of sequence data to GenBank records are complicated by apparent inaccuracies of older sequences as well as potentially misidentified samples. Broad survey of C. lanceolata from across its range showed little variability, but the ITS sequence of a morphologically distinct sample from a Florida limestone glade area was distinct in lacking a length polymorphism that was present in other samples. Tribe Coreopsideae is part of the Heliantheae alliance and earlier was often included in an expanded Heliantheae (Anderberg et al. 2007) in which it was usually treated as a subtribe (Crawford et al. 2009). The tribe shows a small burst of diversity in the southeastern USA involving Bidens and Coreopsis sect. -
Grasses Plant List
Grasses Plant List California Botanical Name Common Name Water Use Native Aristida purpurea purple three-awn Very Low X Arundinaria gigantea cane reed Low Bothriochloa barbinodis cane bluestem Low X Bouteloua curtipendula sideoats grama Low X Bouteloua gracilis, cvs. blue grama Low X Briza media quaking grass Low Calamagrostis x acutiflora cvs., e.g. Karl feather reed grass Low Foerster Cortaderia selloana cvs. pampas grass Low Deschampsia cespitosa, cvs. tufted hairgrass Low X Distichlis spicata (marsh, reveg.) salt grass Very Low X Elymus condensatus, cvs. (Leymus giant wild rye Low X condensatus) Elymus triticoides (Leymus triticoides) creeping wild rye Low X Eragrostis elliottii 'Tallahassee Sunset' Elliott's lovegrass Low Eragrostis spectabilis purple love grass Low Festuca glauca blue fescue Low Festuca idahoensis, cvs. Idaho fescue Low X Festuca mairei Maire's fescue Low Helictotrichon sempervirens, cvs. blue oat grass Low Hordeum brachyantherum Meadow barley Very Low X Koeleria macrantha (cristata) June grass Low X Melica californica oniongrass Very Low X Melica imperfecta coast range onion grass Very Low X Melica torreyana Torrey's melic Very Low X Muhlenbergia capillaris, cvs. hairy awn muhly Low Muhlenbergia dubia pine muhly Low Muhlenbergia filipes purply muhly Low Muhlenbergia lindheimeri Lindheimer muhly Low Muhlenbergia pubescens soft muhly Low Muhlenbergia rigens deer grass Low X Nassella gigantea giant needle grass Low Panicum spp. panic grass Low Panicum virgatum, cvs. switch grass Low Pennisetum alopecuroides, cvs. -
Native Plants for Pollinators
Native Plants for a Pollinator Gardens Ginny Rosenkranz Extension Educator Commercial Horticulture [email protected] Why Native? • Consider that honeybees are NOT native! • Still…… Choose plants with pollen and nectar • Fragrant flowers • Composite flowers • Umbrella flowers Find the right color • Bees see Blue and Violet • Have a GREAT sense of smell • Like ‘landing pads’ • Tubular flowers Cover all the seasons • Spring flowers • Summer flowers • Fall flowers Include different shapes and sizes Plant in groups • Full sun • Protection from wind • Increases pollination Add water features Spring flowers • Phlox subulata - Moss Pink Spring flowers • Aquilegia – Columbine Spring flowers • Baptisia australis – False Indigo Spring flowers • Dicentra eximia – Fringed Bleeding Hearts Spring flowers • Geranium maculatum – Wild Geranium Spring flowers • Penstemon digitalis – Beard tongue Spring flowers • Salvia lyrata – Lyre leaf sage Spring flowers • Tradescantia virginiana - Spiderwort Viola sororia - Violet Summer annuals • Cleome hassleriana Annual summer flowers • Helianthus annuus - Sunflowers Annual summer flowers • Salvia Summer annuals • Tithonia rotundifolia – Mexican sunflower Summer annuals • Zinnia elegans Summer • Agastache anethiodora – Anise Hyssop Summer • Asclepias tuberosa – Butterfly weed Summer • Asclepias incarnate – swamp Milkweed Summer • Coreopsis lanceolata - Tickseed Summer • Coreopsis verticillata -Threadleaf Coreopsis Summer • Echinacea purpurea – Purple cone flower Summer • Eupatorium dubium- Joe Pye weed Summer • Filipendula -
Grasses of Oklahoma
osu p.llaotten Technical Bulletin No. 3 October, 1938 OKLABOJIA AGRICULTURAL AND MECHANICAL COLLEGE AGRICULTURAL ExPERIMENT STATION Lippert S. Ellis, Acting Director GRASSES OF OKLAHOMA By B. I. FEATHERLY Professor of Botany and Plant Pathology Stillwater, Oklahoma Technical Bulletin No. 3 October, 1938 OKLAHOMA AGRICULTURAL AND MECHANICAL COLLEGE AGRICULTURAL EXPERIMENT STATION Lippert S. Ellis. Acting Director GRASSES OF OI(LAHO~lA By H. I. FEATHERLY Professor of Botany and Plant Pathology Stillwater, Oklahoma ERRATA Page 6, No. 6: For "Leptochlea" read "Leptochloa." Page 10, No. 3 (second line): For "E. colona" read "E. colonum." Page 11, in "Distribution" of Phalaris caroliniana (Walt.): For "Ste-.vens" read "Stevens." Page 23, No. 2b: J:o"'or "Elymus canadensis ar. brachystachys" read "Elymus canadensis var. brachystachys." Page 28: For "Cynodon Dactylon ... etc." read "Cynodon dactylon (I,.) Pers. (Capriola dactylon Kuntz.) Bermuda G1·ass." Page 41, No. 13: For "Aristida divaricata Humb. and Bonnl." read "Aristida divaricata Humb. and Bonpl." Page 65, No. 3: For "Triodia clongata" read "Triodia elongata." Page 67. No. 11 (thud linel: For "ekels" read "keels." Page 71, No. 9 and Fig 81: For "Eragrostis sessilispicata" read "EragTostis sessilispica." Page 84, first line at top of page: For Melica nitens (Nutt.)'' re~d '?tE:cH~·a nH:ens CSc-;:itn.) !-Iutt." Page 106, No. 12, third line of description: For "within white margins" read "with white margins." Page 117. No. 2: l',or "Erianthus ... etc." read "Erianthus alopecuroides (L.) Ell. (E. divaricatus (L.) Hitchc.) Silver Plume-grass." Fage 123, No. 8: For "(A. torreanus Steud.)" read "A. tor rey:Jnus Steuc1.)" PREFACE The grass family needs no introduction. -
Prairie Plant Profiles
Prairie Plant Profiles Freedom Trail Park Westfield, IN 1 Table of Contents The Importance of Prairies…………………………………………………… 3 Grasses and Sedges……………………………………………………….......... 4-9 Andropogon gerardii (Big Bluestem)…………………………………………………………. 4 Bouteloua curtipendula (Side-Oats Grama)…………………………………………………… 4 Carex bicknellii (Prairie Oval Sedge)…………………………………………………………. 5 Carex brevior (Plains Oval Sedge)……………………………………………………………. 5 Danthonia spicata (Poverty Oat Grass)……………………………………………………….. 6 Elymus canadensis (Canada Wild Rye)…………………………………….............................. 6 Elymus villosus (Silky Wild Rye)……………………………………………………………… 7 Elymus virginicus (Virginia Wild Rye)………………………………………........................... 7 Panicum virgatum (Switchgrass)……………………………………………………………… 8 Schizachyrium scoparium (Little Bluestem)…………………………………………............... 8 Sorghastrum nutans (Indian Grass)……………………………………...….............................. 9 Forbs……………………………………………………………………..……... 10-25 Asclepias incarnata (Swamp Milkweed)………………………………………………………. 10 Aster azureus (Sky Blue Aster)…………………………………………….….......................... 10 Aster laevis (Smooth Aster)………………………………………………….………………… 11 Aster novae-angliae (New England Aster)…………………………………..………………… 11 Baptisia leucantha (White False Indigo)………………………………………………………. 12 Coreopsis palmata (Prairie Coreopsis)………………………………………………………… 12 Coreopsis tripteris (Tall Coreopsis)…………………………………...………………………. 13 Echinacea pallida (Pale Purple Coneflower)……………………………….............................. 13 Echinacea purpurea (Purple Coneflower)……………………………………......................... -
Chromosome Numbers in Compositae, XII: Heliantheae
SMITHSONIAN CONTRIBUTIONS TO BOTANY 0 NCTMBER 52 Chromosome Numbers in Compositae, XII: Heliantheae Harold Robinson, A. Michael Powell, Robert M. King, andJames F. Weedin SMITHSONIAN INSTITUTION PRESS City of Washington 1981 ABSTRACT Robinson, Harold, A. Michael Powell, Robert M. King, and James F. Weedin. Chromosome Numbers in Compositae, XII: Heliantheae. Smithsonian Contri- butions to Botany, number 52, 28 pages, 3 tables, 1981.-Chromosome reports are provided for 145 populations, including first reports for 33 species and three genera, Garcilassa, Riencourtia, and Helianthopsis. Chromosome numbers are arranged according to Robinson’s recently broadened concept of the Heliantheae, with citations for 212 of the ca. 265 genera and 32 of the 35 subtribes. Diverse elements, including the Ambrosieae, typical Heliantheae, most Helenieae, the Tegeteae, and genera such as Arnica from the Senecioneae, are seen to share a specialized cytological history involving polyploid ancestry. The authors disagree with one another regarding the point at which such polyploidy occurred and on whether subtribes lacking higher numbers, such as the Galinsoginae, share the polyploid ancestry. Numerous examples of aneuploid decrease, secondary polyploidy, and some secondary aneuploid decreases are cited. The Marshalliinae are considered remote from other subtribes and close to the Inuleae. Evidence from related tribes favors an ultimate base of X = 10 for the Heliantheae and at least the subfamily As teroideae. OFFICIALPUBLICATION DATE is handstamped in a limited number of initial copies and is recorded in the Institution’s annual report, Smithsonian Year. SERIESCOVER DESIGN: Leaf clearing from the katsura tree Cercidiphyllumjaponicum Siebold and Zuccarini. Library of Congress Cataloging in Publication Data Main entry under title: Chromosome numbers in Compositae, XII. -
Amorpha Canescens Pursh Leadplant
leadplant, Page 1 Amorpha canescens Pursh leadplant State Distribution Best Survey Period Photo by Susan R. Crispin Jan Feb Mar Apr May Jun Jul Aug Sept Oct Nov Dec Status: State special concern the Mississippi valley through Arkansas to Texas and in the western Great Plains from Montana south Global and state rank: G5/S3 through Wyoming and Colorado to New Mexico. It is considered rare in Arkansas and Wyoming and is known Other common names: lead-plant, downy indigobush only from historical records in Montana and Ontario (NatureServe 2006). Family: Fabaceae (pea family); also known as the Leguminosae. State distribution: Of Michigan’s more than 50 occurrences of this prairie species, the vast majority of Synonym: Amorpha brachycarpa E.J. Palmer sites are concentrated in southwest Lower Michigan, with Kalamazoo, St. Joseph, and Cass counties alone Taxonomy: The Fabaceae is divided into three well accounting for more than 40 of these records. Single known and distinct subfamilies, the Mimosoideae, outlying occurrences have been documented in the Caesalpinioideae, and Papilionoideae, which are last two decades from prairie remnants in Oakland and frequently recognized at the rank of family (the Livingston counties in southeast Michigan. Mimosaceae, Caesalpiniaceae, and Papilionaceae or Fabaceae, respectively). Of the three subfamilies, Recognition: Leadplant is an erect, simple to sparsely Amorpha is placed within the Papilionoideae (Voss branching shrub ranging up to ca. 1 m in height, 1985). Sparsely hairy plants of leadplant with greener characterized by its pale to grayish color derived from leaves have been segregated variously as A. canescens a close pubescence of whitish hairs that cover the plant var. -
Cynodonteae Tribe
POACEAE [GRAMINEAE] – GRASS FAMILY Plant: annuals or perennials Stem: jointed stem is termed a culm – internodial stem most often hollow but always solid at node, mostly round, some with stolons (creeping stem) or rhizomes (underground stem) Root: usually fibrous, often very abundant and dense Leaves: mostly linear, sessile, parallel veins, in 2 ranks (vertical rows), leaf sheath usually open or split and often overlapping, but may be closed Flowers: small in 2 rows forming a spikelet (1 to several flowers), may be 1 to many spikelets with pedicels or sessile to stem; each flower within a spikelet is between an outer limna (bract, with a midrib) and an inner palea (bract, 2-nerved or keeled usually) – these 3 parts together make the floret – the 2 bottom bracts of the spikelet do not have flowers and are termed glumes (may be reduced or absent), the rachilla is the axis that hold the florets; sepals and petals absent; 1-6 but often 3 stamens; 1 pistil, 1-3 but usually 2 styles, ovary superior, 1 ovule – there are exceptions to most everything!! Fruit: seed-like grain (seed usually fused to the pericarp (ovary wall) or not) Other: very large and important family; Monocotyledons Group Genera: 600+ genera; locally many genera 2 slides per species WARNING – family descriptions are only a layman’s guide and should not be used as definitive POACEAE [GRAMINEAE] – CYNODONTEAE TRIBE Sideoats Grama; Bouteloua curtipendula (Michx.) Torr. var. curtipendula - Cynodonteae (Tribe) Bermuda Grass; Cynodon dactylon (L.) Pers. (Introduced) - Cynodonteae (Tribe) Egyptian Grass [Durban Crowfoot]; Dactyloctenium aegyptium (L.) Willd (Introduced) [Indian] Goose Grass; Eleusine indica (L.) Gaertn. -
MSD Plant List 031009.Xlsx
Bioretention and Organic Filters Latin Name Grasses/Sedges Andropogon gerardii Big bluestem x x x 4-6 2 plum x x Bouteloua curtipendula Sideoats grama x x 1-2 1 tan Carex praegracilis* Tollway sedge x x x 1-2 1.5 tan x x x x x Carex grayii Bur sedge x x 1-2 1.5 tan x x x Carex shortiana Short's sedge x x x 2 1.5 bluish x x x x x x Carex vulpinoidea Fox sedge x x 2-3 1.5 tan x x x x x x x x x H 24 3 L L Chasmanthium latifolium River oats x x x 2-4 1.5 green Schizachyrium scoparium Little bluestem x x 2-3 1.5 bronze x x Sporobolus heterolepis Prairie dropseed x x 2-3 1.5 tan Common Name Forbs Amsonia illustris Shining bluestarGrasses/Sedges x x x 2-3 3 lt. blue x x x x x x x x x H 36 5 L H Aster novae-angliae New England aster x x 3-4 2 violet x x x x x x x x M 24 3 L H Chelone obliqua Rose turtlehead x x 3-4 2 Coreopsis lanceolata Lanceleaf coreopsis x x 1-2 1.5 yellow x x x x x x x L M Echinacea pallida Pale purple coneflower x 2-3 1.5 violet x x x x x x x L L Echinacea purpurea Purple coneflower x 2-3 1.5 violet x x x x x x x x x L L Eryngium yuccifolium Rattlesnake master 2-3 1.5 green Eupatorium coelestinum Mist flower; wild ageratum x x x 1-2 1.5 Hibiscus lasiocarpos Rose mallow x x 3-5 2.5 Iris virginica Southern blueflag iris x x 2-3 2 blue x x x x x x x H 36 4 M M Pycnanthemum tenuifolium Slender Mountain Mint x 2-3 1.5 white x x x x x x x x L H Ratibida pinnata Yellow/Grey coneflower x 3-5 1.5 yellow x x xSubmerge xd & x Emerg xent x (wate xr xdepth x in M 12 1 M H L Rudbeckia fulgida Orange coneflower x 2 2 yellow Rudbeckia hirta