The Comparative Method and the Fossil Record
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Taxonomy of Tropical West African Bivalves V. Noetiidae
Bull. Mus. nati. Hist, nat., Paris, 4' sér., 14, 1992, section A, nos 3-4 : 655-691. Taxonomy of Tropical West African Bivalves V. Noetiidae by P. Graham OLIVER and Rudo VON COSEL Abstract. — Five species of Noetiidae are described from tropical West Africa, defined here as between 23° N and 17°S. The Noetiidae are represented by five genera, and four new taxa are introduced : Stenocista n. gen., erected for Area gambiensis Reeve; Sheldonella minutalis n. sp., Striarca lactea scoliosa n. subsp. and Striarca lactea epetrima n. subsp. Striarca lactea shows considerable variation within species. Ecological factors and geographical clines are invoked to explain some of this variation but local genetic isolation could not be excluded. The relationships of the shallow water West African noetiid species are analysed and compared to the faunas of the Mediterranean, Caribbean, Panamic and Indo- Pacific regions. Stenocista is the only genus endemic to West Africa. A general discussion on the relationships of all the shallow water West African Arcoidea is presented. The level of generic endemism is low and there is clear evidence of circumtropical patterns of similarity between species. The greatest affinity is with the Indo-Pacific but this pattern is not consistent between subfamilies. Notably the Anadarinae have greatest similarity to the Panamic faunal province. Résumé. — Description de cinq espèces de Noetiidae d'Afrique occidentale tropicale, ici définie entre 23° N et 17° S. Les Noetiidae sont représentés par cinq genres. Quatre taxa nouveaux sont décrits : Stenocista n. gen. (espèce-type Area gambiensis Reeve) ; Sheldonella minutalis n. sp., Striarca lactea scoliosa n. -
The 1940 Ricketts-Steinbeck Sea of Cortez Expedition: an 80-Year Retrospective Guest Edited by Richard C
JOURNAL OF THE SOUTHWEST Volume 62, Number 2 Summer 2020 Edited by Jeffrey M. Banister THE SOUTHWEST CENTER UNIVERSITY OF ARIZONA TUCSON Associate Editors EMMA PÉREZ Production MANUSCRIPT EDITING: DEBRA MAKAY DESIGN & TYPOGRAPHY: ALENE RANDKLEV West Press, Tucson, AZ COVER DESIGN: CHRISTINE HUBBARD Editorial Advisors LARRY EVERS ERIC PERRAMOND University of Arizona Colorado College MICHAEL BRESCIA LUCERO RADONIC University of Arizona Michigan State University JACQUES GALINIER SYLVIA RODRIGUEZ CNRS, Université de Paris X University of New Mexico CURTIS M. HINSLEY THOMAS E. SHERIDAN Northern Arizona University University of Arizona MARIO MATERASSI CHARLES TATUM Università degli Studi di Firenze University of Arizona CAROLYN O’MEARA FRANCISCO MANZO TAYLOR Universidad Nacional Autónoma Hermosillo, Sonora de México RAYMOND H. THOMPSON MARTIN PADGET University of Arizona University of Wales, Aberystwyth Journal of the Southwest is published in association with the Consortium for Southwest Studies: Austin College, Colorado College, Fort Lewis College, Southern Methodist University, Texas State University, University of Arizona, University of New Mexico, and University of Texas at Arlington. Contents VOLUME 62, NUMBER 2, SUmmer 2020 THE 1940 RICKETTS-STEINBECK SEA OF CORTEZ EXPEDITION: AN 80-YEAR RETROSPECTIVE GUesT EDITed BY RIchard C. BRUsca DedIcaTed TO The WesTerN FLYer FOUNdaTION Publishing the Southwest RIchard C. BRUsca 215 The 1940 Ricketts-Steinbeck Sea of Cortez Expedition, with Annotated Lists of Species and Collection Sites RIchard C. BRUsca 218 The Making of a Marine Biologist: Ed Ricketts RIchard C. BRUsca AND T. LINdseY HasKIN 335 Ed Ricketts: From Pacific Tides to the Sea of Cortez DONald G. Kohrs 373 The Tangled Journey of the Western Flyer: The Boat and Its Fisheries KEVIN M. -
Biodiversità Ed Evoluzione
Allma Mater Studiiorum – Uniiversiità dii Bollogna DOTTORATO DI RICERCA IN BIODIVERSITÀ ED EVOLUZIONE Ciclo XXIII Settore/i scientifico-disciplinare/i di afferenza: BIO - 05 A MOLECULAR PHYLOGENY OF BIVALVE MOLLUSKS: ANCIENT RADIATIONS AND DIVERGENCES AS REVEALED BY MITOCHONDRIAL GENES Presentata da: Dr Federico Plazzi Coordinatore Dottorato Relatore Prof. Barbara Mantovani Dr Marco Passamonti Esame finale anno 2011 of all marine animals, the bivalve molluscs are the most perfectly adapted for life within soft substrata of sand and mud. Sir Charles Maurice Yonge INDEX p. 1..... FOREWORD p. 2..... Plan of the Thesis p. 3..... CHAPTER 1 – INTRODUCTION p. 3..... 1.1. BIVALVE MOLLUSKS: ZOOLOGY, PHYLOGENY, AND BEYOND p. 3..... The phylum Mollusca p. 4..... A survey of class Bivalvia p. 7..... The Opponobranchia: true ctenidia for a truly vexed issue p. 9..... The Autobranchia: between tenets and question marks p. 13..... Doubly Uniparental Inheritance p. 13..... The choice of the “right” molecular marker in bivalve phylogenetics p. 17..... 1.2. MOLECULAR EVOLUTION MODELS, MULTIGENE BAYESIAN ANALYSIS, AND PARTITION CHOICE p. 23..... CHAPTER 2 – TOWARDS A MOLECULAR PHYLOGENY OF MOLLUSKS: BIVALVES’ EARLY EVOLUTION AS REVEALED BY MITOCHONDRIAL GENES. p. 23..... 2.1. INTRODUCTION p. 28..... 2.2. MATERIALS AND METHODS p. 28..... Specimens’ collection and DNA extraction p. 30..... PCR amplification, cloning, and sequencing p. 30..... Sequence alignment p. 32..... Phylogenetic analyses p. 37..... Taxon sampling p. 39..... Dating p. 43..... 2.3. RESULTS p. 43..... Obtained sequences i p. 44..... Sequence analyses p. 45..... Taxon sampling p. 45..... Maximum Likelihood p. 47..... Bayesian Analyses p. 50..... Dating the tree p. -
Patterns of Morphological Diversity Among and Within Arcid Bivalve Species Pairs Separated by the Isthmus of Panama
J. PaleonL, 75(3), 2001, pp. 590-606 Copyright © 2001, The Paleontological Society 0022-3360/01/0075-590$03.00 PATTERNS OF MORPHOLOGICAL DIVERSITY AMONG AND WITHIN ARCID BIVALVE SPECIES PAIRS SEPARATED BY THE ISTHMUS OF PANAMA PETER B. MARKO'-3 AND JEREMY B. C. JACKSON'.^ 'Smithsonian Tropical Researcii Institute, Box 2072, Balboa, Republic of Panama, and ^Scripps Institute of Oceanography, Geosciences Research Division, University of California San Diego, La JoUa 92093-0224 U.S.A. ABSTRACT•Geminate species are morphologically similar sister-species found on either side of the Isthmus of Panama. The existence of all geminates in the tropical Eastern Pacific ocean and the Caribbean Sea is most often explained by vicariance: closure of the Central American Seaway 3.1 to 3.5 Ma simultaneously isolated populations of species with amphi-American distributions. In this paper, we test the potential of morphological measurements for discriminating between Recent geminate species pairs from three genera (Area, Arcopsis, and Barbatia) in the bivalve family Arcidae and examine the prospects for distinguishing nominal species in the fossil record. Fourteen morphological variables were used to characterize shell shape and multivariate methods were used to discriminate between five Recent species pairs. Collection sites were also used as a priori groups for discrimination to describe patterns of intraspecific morphological variation and to evaluate differences among samples from different geographic regions. On average, 84 percent of specimens within geminate pairs are classified correctly following five separate discriminant analyses with nominal species as the grouping variable. Although all but one arcid species pair are discriminated with high statistical significance, some collection sites within species are highly morphologically distinct. -
Documenting Benthic Invertebrate from Rocky Environments in the REMAPE
MANUAL ON DOCUMENTING BENTHIC INVERTEBRATE COMMUNITIES FROM ROCKY ENVIRONMENTS IN THE MARINE RESERVE EL PELADO, SANTA ELENA, ECUADOR ISBN: 978-9942-36-314-5 Sascha Steiner, Antonella Lavorato, Jenny Rodríguez A MANUAL ON DOCUMENTING BENTHIC INVERTEBRATE COMMUNITIES FROM ROCKY ENVIRONMENTS IN THE MARINE RESERVE EL PELADO, SANTA ELENA, ECUADOR 1, 2 2 2 Steiner SCC , Lavorato AL , Rodríguez J 1 Secretaría Nacional de Educación Superior, Ciencia, Tecnología Innovación (SENESCYT), Guayaquil, Ecuador 2 Escuela Superior Politécnica del Litoral (ESPOL), Centro Nacional de Acuicultura e Investigaciones Marinas (CENAIM), Guayaquil, Ecuador Proyecto Prometeo: Creación e implementación de un sistema de información marino y atlas dinámico georeferenciado de biodiversidad del ecosistema del área marina protegida El Pelado, Santa Elena, Ecuador Proyecto: Caracterización de la biodiversidad microbiológica y de invertebrados de la reserva marina El Pelado a escalas taxonómica, metabolómica y metagenómica, para uso en salud humana y animal This handbook will be cited as follows Steiner, S. Lavorato, A. Rodríguez, J. A MANUAL ON DOCUMENTING BENTHIC INVERTEBRATE COMMUNITIES FROM ROCKY ENVIRONMENTS IN THE MARINE RESERVE EL PELADO, SANTA ELENA, ECUADOR. Escuela Superior Politécnica del Litoral. 88 pp. Guayaquil, Ecuador. Technical Review: María José Brito Cover and text design: María José Brito and Juan Carlos Castillo Cover Pictures: Karla Jaramillo Supervision and Approval: Jenny Rodríguez and Gabriela Agurto Printer and binder: Gabriel Zurita Correspondence and Exchange: Cecilia Campoverde ISBN: 978-9942-36-314-5 Short Title Documenting benthic invertebrate from rocky environments in the REMAPE. Autorización de Investigación Científica: N°005-17 IC-FAU- DPSE/MA Contrato Marco de Acceso a Recurso Genético: MAE- DNB-CM-2015-0021 PROLOGUE Marine biodiversity offers a wide range of opportunities for biotechnological development. -
Diversidad De La Comunidad De Moluscos De Fondos Blandos Del Archipiélago Espíritu Santo, Golfo De California, México
INSTITUTO POLITÉCNICO NACIONAL CENTRO INTERDISCIPLINARIO DE CIENCIAS MARINAS DIVERSIDAD DE LA COMUNIDAD DE MOLUSCOS DE FONDOS BLANDOS DEL ARCHIPIÉLAGO ESPÍRITU SANTO, GOLFO DE CALIFORNIA, MÉXICO. TESIS QUE PARA OBTENER EL GRADO DE MAESTRÍA EN CIENCIAS EN MANEJO DE RECURSOS MARINOS PRESENTA ALEJANDRO BOSCH CALLAR LA PAZ, B.C.S., JUNIO DEL 2018 AGRADECIMIENTOS Primero que todo a mis padres por confiar en mí y apoyarme en todo momento de mi carrera. A mi esposa Susana Perera Valderrama por estar a mi lado en todo momento y por darme el mejor regalo que se puede esperar en la vida: mi hijo Alejandro Jr. Bosch Perera A mi hermana que a pesar de la distancia sigue estando presente para mi y sabe que la quiero con la vida. Al Centro Interdisciplinario de Ciencias Marinas por permitirme la realización de este trabajo en sus instalaciones. A mis hermano Franklin con quien emprendí este largo viaje fuera de nuestra tierra, por los tantos momentos, buenos y malos, y no cambiar a pesar de las dificultades. A mis hermanos los simbiontes que una ves mas nos reunimos pese a la distancia que nos separaba y nuestra amistad se fortalece cada día mas. Un agradecimiento especial a Angel de León Espinosa, por ser la primera persona en brindarme su apoyo cuando recién llegue a México, y por las muchas aventuras que nos hemos aventado y las que vendrán. Un Agradecimiento especial a Ramón y a Tatiana de Dream Yatch Charter por su apoyo en todo este tiempo que ha durado mi estancia aquí en La Paz. -
View / Open Grinich.Pdf
'fHE STRUCTURE AND OXYGEJ.\I EQUILIBRIUM PROPERTIES OF THE INTRACELLULAR HEMOGLOBINS FROM THE BIVALVE MOLLUSC BARBATIA REEVEANA by NICHOLAS PETER GRINICH ~ t A THESIS Presented to the Department of Biology and the Graduate School of the University of Oregon in partial fulfillment of the requirements for the degree of Master of Science September 1979 -j 1m ahstr<1ct of the Thesis of Nicholas Peter Grinich for the degree of HasteI' of Science in the De.pClrtment of Biology to be taken September 1979 Title: . The Structure and Oxygen Equilibrium Properties of the IntracelJ-ular Hemoglobins from theifivalve Hollusc :Barbatia reeveana. ~- /}1 r-- ~. I ('~-~ If Approved: /(/ __ 'j C {//, r, j (/(/ ~. ------ .---.-- .. -f ----. ~ f ~ The red blood cells of the bivalve F.ollusc llarbatia reeveana contain tHO hemoglobins. One. a tetramer (M 60,000). is typical r = of the other- intracellular helT.oglobins. The other is uni(jue among any intracellular hemop,lobin studied so far. It is very large with a molecular l..rcight of 430,000. ,:mel 11;:5 a suhlnit with a molecular structure and OX)7gen e(jl.lilibrium properties of these intracellular hemoglob.ins are presented in this thesis. I I I I , I I ~ [ I I I t (i.! I i I I I I iii VITA NN~E OF AUTHOR: Nicholas ~eter Grinich PLACE OF BIRTH: Palo Alto, California DATE OF BIRTH: ~ February 5, 1951 UNDERGRADUATE AND GRADUATE SCHOOLS ATTENDED: Goddard College Foothill College University of Washington University of Oregon DEGREES M"jARDED: Bachelor 6f Science (Microbiology) 1973 University of Washington AREAS OF SPECIAL INTEREST: Comparative Physiology and Biochemistry PROFESSIONAL EXPERIEl'JCE: Research Assistant, Department of f''iicrobiology, University of Washington, 1973-1974. -
Paleoecology and Paleobiogeography of Fossil Mollusks from Isla Isabela (Gala´Pagos, Ecuador)
FLORE Repository istituzionale dell'Università degli Studi di Firenze Paleoecology and paleobiogeography of fossil mollusks from Isabela Questa è la Versione finale referata (Post print/Accepted manuscript) della seguente pubblicazione: Original Citation: Paleoecology and paleobiogeography of fossil mollusks from Isabela / RAGAINI L.; BIANUCCI G.; CANTALAMESSA G.; G. VALLERI; LANDINI W.. - In: JOURNAL OF SOUTH AMERICAN EARTH SCIENCES. - ISSN 0895-9811. - STAMPA. - 15(2002), pp. 381-388. Availability: This version is available at: 2158/225147 since: Publisher: Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Terms of use: Open Access La pubblicazione è resa disponibile sotto le norme e i termini della licenza di deposito, secondo quanto stabilito dalla Policy per l'accesso aperto dell'Università degli Studi di Firenze (https://www.sba.unifi.it/upload/policy-oa-2016-1.pdf) Publisher copyright claim: (Article begins on next page) 03 October 2021 Journal of South American Earth Sciences 15 (2002) 381–389 www.elsevier.com/locate/jsames Paleoecology and paleobiogeography of fossil mollusks from Isla Isabela (Gala´pagos, Ecuador) Luca Ragainia,*, Giovanni Bianuccia, Gino Cantalamessab, Gigliola Valleric, Walter Landinia aDipartimento di Scienze della Terra, Universita` di Pisa, Via S. Maria, 53, 56126 Pisa, Italy bDipartimento di Scienze della Terra, Universita` di Camerino, Via Gentile III da Varano, 62032 Camerino (MC), Italy cDipartimento di Scienze della Terra, Universita` di Firenze, Via La Pira, 4, 5512 Firenze, Italy Received 1 April 2000; accepted 2 January 2002 Abstract Sandy sediments outcropping near Villamil (Isla Isabela, Gala´pagos) have yielded a fossil molluscan assemblage represented by 42 taxa (23 bivalves and 19 gastropods) and dominated by the lucinids Divalinga eburea and Pegophysema spherica. -
Brachyura: Pinnotheridae), with an Updated List of Symbiont-Host Associations
diversity Review A Review of the Ecomorphology of Pinnotherine Pea Crabs (Brachyura: Pinnotheridae), with an Updated List of Symbiont-Host Associations Werner de Gier 1,2,* and Carola Becker 3 1 Taxonomy and Systematics Group, Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, The Netherlands 2 Groningen Institute for Evolutionary Life Sciences, University of Groningen, P.O. Box 11103, 9700 CC Groningen, The Netherlands 3 Vergleichende Zoologie, Institut für Biologie, Humboldt-Universität zu Berlin, Philippstraße 13, Haus 2, 10115 Berlin, Germany; [email protected] * Correspondence: [email protected]; Tel.: +31-7-1751-9600 Received: 14 October 2020; Accepted: 10 November 2020; Published: 16 November 2020 Abstract: Almost all pea crab species in the subfamily Pinnotherinae (Decapoda: Brachyura: Pinnotheridae) are considered obligatory endo- or ectosymbionts, living in a mutualistic or parasitic relationship with a wide variety of invertebrate hosts, including bivalves, gastropods, echinoids, holothurians, and ascidians. While the subfamily is regarded as one of the most morphologically adapted groups of symbiotic crabs, the functionality of these adaptations in relation to their lifestyles has not been reviewed before. Available information on the ecomorphological adaptations of various pinnotherine crab species and their functionality was compiled in order to clarify their ecological diversity. These include the size, shape, and ornamentations of the carapace, the frontal appendages and mouthparts, the cheliped morphology, the ambulatory legs, and the reproductive anatomy and larval characters. The phylogenetic relevance of the adaptations is also reviewed and suggestions for future studies are made. Based on an updated list of all known pinnotherine symbiont–host associations and the available phylogenetic reconstructions, it is concluded that, due to convergent evolution, unrelated species with a similar host interaction might display the same morphological adaptations. -
2014 Not a Drop Left to Drink Table of Contents Not a Drop Left to Drink: the Field Trip 5 Robert E
Not a drop left to drink Robert E. Reynolds, editor California State University Desert Studies Center 2014 Desert Symposium April 2014 not a drop left to drink Table of contents Not a drop left to drink: the field trip 5 Robert E. Reynolds Ozone transport into and across the Mojave: interpreting processes from long-term monitoring data 30 Richard (Tony) VanCuren Stratigraphy and fauna of Proterozoic and Cambrian formations in the Marble Mountains, San Bernardino County, California 42 Bruce W. Bridenbecker Tertiary basin evolution in the Ship Mountains of southeastern California 48 Martin Knoll Ship Mountains mines 52 Larry M. Vredenburgh History of mining in the Old Woman Mountains 54 Larry M. Vredenburgh Chubbuck, California 57 Larry M. Vredenburgh Danby Dry Lake salt operations 60 Larry M. Vredenburgh Danby Playa: ringed with salty questions 63 Robert E. Reynolds and Thomas A. Schweich Vertebrate fossils from Desert Center, Chuckwalla Valley, California 68 Joey Raum, Geraldine L. Aron, and Robert E. Reynolds Population dynamics of the Joshua tree (Yucca brevifolia): twenty-three-year analysis, Lost Horse Valley, Joshua Tree National Park 71 James W. Cornett A notable fossil plant assemblage from the Indio Hills Formation, Indio Hills, Riverside County, California 74 Joey Raum, Geraldine L. Aron, and Robert E. Reynolds Dos Palmas Preserve: an expanding oasis 78 James W. Cornett Width and dip of the southern San Andreas Fault at Salt Creek from modeling of geophysical data 83 Victoria Langenheim, Noah Athens, Daniel Scheirer, Gary Fuis, Michael Rymer, and Mark Goldman Records of freshwater bony fish from the latest Pleistocene to Holocene Lake Cahuilla beds of western Imperial County, California 94 Mark A. -
Mathilde Klein Thesis (PDF 4MB)
CHARACTERISATION OF DUPLICATED HAEMOGLOBIN GENES IN BIVALVES Mathilde Klein Bachelor of Medical Laboratory Science, QUT Submitted in fulfilment of the requirements for the degree of Master of Applied Science (Research) School of Biomedical Sciences, IHBI Faculty of Health Queensland University of Technology 2017 Keywords Arcoida, Bivalves, Gene duplication, Genomics, Globins, Haemoglobin, Limoida, Molluscs, Transcriptome Keywords i Abstract Haemoglobins (Hbs) are found in virtually all phyla and are some of the most investigated proteins in biomedical sciences. These proteins exhibit an extraordinary diversity of form and function in invertebrate lineages. This provides a unique opportunity to explore the origin and evolution of Hbs yet little is known about their distribution, function and evolution in invertebrate lineages. To explore further the functions and evolution of those Hbs, recent transcriptome data for the Arcid bivalve Anadara trapezia is investigated here. This species shows the presence of duplicated Hb encoding genes suggesting that gene duplication may have been more extensive than previously thought in bivalves. This study tests the hypothesis that these duplicated genes show patterns of tissue specific expression and evidence of neofunctionalisation. This is shown here for at least three Hb encoding genes present in A. trapezia with strong tissue specific expression in haemolymph compared to other tissues. Furthermore, the expression of these genes remains unaffected by prolonged air exposure suggesting that neofunctionalisation may confer an evolutionary advantage to this bivalve. As well as the unique Hbs found in the bivalve order Arcoida, Hbs are also found in three other bivalve orders: Carditoida, Solemyoida and Veneroida. These four orders that possess Hbs provide compelling evidence for the independent evolution of these proteins in multiple bivalve lineages. -
PROCEEDINGS of the 6TH FOSSIL RESOURCE CONFERENCE Edited by Vincent L
217 PROCEEDINGS OF THE 6TH FOSSIL RESOURCE CONFERENCE Edited by Vincent L. Santucci and Lindsay McClelland Edited by Vincent L. Santucci and Lindsay McClelland Technical Report NPS/NRGRD/GRDTR-01/01 Technical Report NPS/NRGRD/GRDTR-01/01 United States Department of the Interior•National Park Service•Geological Resource Division 218 Copies of this report are available from the editors. Geological Resources Division 12795 West Alameda Parkway Academy Place, Room 480 Lakewood, CO 80227 Please refer to: National Park Service D-2228 (September 2001). Cover Illustration Photo of Red Gulch Dinosaur Tracksite footprint (upper left); digital contour of track (upper right); Digital Terrain Model of track, planar view (lower left); and Digital Terrain Model of track, oblique view (lower right). 219 PROCEEDINGS OF THE 6TH FOSSIL RESOURCE CONFERENCE EDITED BY Vincent L. Santucci National Park Service PO Box 592 Kemmerer, WY 83101 AND Lindsay McClelland National Park Service Room 3223 - Main Interior 1849 C Street, N.W. Washington, DC 20240-0001 Geologic Resources Division Technical Report NPS/NRGRD/GRDTR-01/01 September 2001 220 6TH FOSSIL CONFERENCE PROCEEDINGS VOLUME 221 CONTENTS INTRODUCTION ................................................................................................................................................................. v SCIENCE AND RESEARCH ON PUBLIC LANDS The fossil ferns of Petrified Forest National Park, Arizona, and their paleoclimatological implications Sidney Ash ...............................................................................................................................................................