2017 North Sea Expedition: PRELIMINARY REPORT
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Bacteria Associated with Tunicate, Polycarpa Aurata, from Lease Sea, Maluku, Indonesia Exhibiting Anti-Multidrug Resistant Bacteria
BIODIVERSITAS ISSN: 1412-033X Volume 20, Number 4, April 2019 E-ISSN: 2085-4722 Pages: 956-964 DOI: 10.13057/biodiv/d200404 Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria DIAH AYUNINGRUM1,5, RHESI KRISTIANA1, AYUNDA AINUN NISA2, SEPTHY KUSUMA RADJASA2, SAKTI IMAM MUCHLISSIN2,4, OCKY KARNA RADJASA2,3, AGUS SABDONO2, AGUS TRIANTO2, 1Department of Coastal Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia 2Department of Marine Science, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedarto, SH, Tembalang, Semarang 50275, Central Java, Indonesia. Tel.: +62-24-7474698, Fax.: +62-24-7474698, email: [email protected]. 3Directorate of Research and Community Services, Ministry of Research, Technology and Higher Education. D Building, Jl. Jenderal Sudirman Pintu Satu, Senayan, Jakarta Pusat 10279, Indonesia 4Tropical Marine Biotechnology Laboratory, Universitas Diponegoro Jl. Lingkar Utara Undip, Semarang 50275, Central Java, Indonesia 1Department of Aquatic Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia Manuscript received: 30 January 2019. Revision accepted: 10 March 2019. Abstract. Ayuningrum D, Kristiana R, Nisa AA, Radjasa SK, Muchlissin SI, Radjasa OK, Sabdono A, Trianto A. 2019. Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria. Biodiversitas 20: 956-964. Tunicate is a rich secondary metabolites producer with various biological activities whether as an original producer or produced by the associated microorganisms. In this study, a total of 11 tunicate specimens were identified as Polycarpa aurata with four color variations based on morphological characteristic and COI gene identification and BLAST analysis. -
Descriptions of New Serpulid Polychaetes from the Kimberleys Of
© The Author, 2009. Journal compilation © Australian Museum, Sydney, 2009 Records of the Australian Museum (2009) Vol. 61: 93–199. ISSN 0067-1975 doi:10.3853/j.0067-1975.61.2009.1489 Descriptions of New Serpulid Polychaetes from the Kimberleys of Australia and Discussion of Australian and Indo-West Pacific Species of Spirobranchus and Superficially Similar Taxa T. Gottfried Pillai Zoology Department, Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom absTracT. In 1988 Pat Hutchings of the Australian Museum, Sydney, undertook an extensive polychaete collection trip off the Kimberley coast of Western Australia, where such a survey had not been conducted since Augener’s (1914) description of some polychaetes from the region. Serpulids were well represented in the collection, and their present study revealed the existence of two new genera, and new species belonging to the genera Protula, Vermiliopsis, Hydroides, Serpula and Spirobranchus. The synonymy of the difficult genera Spirobranchus, Pomatoceros and Pomatoleios is also dealt with. Certain difficult taxa currently referred to as “species complexes” or “species groups” are discussed. For this purpose it was considered necessary to undertake a comparison of apparently similar species, especially of Spirobranchus, from other locations in Australia and the Indo-West Pacific region. It revealed the existence of many more new species, which are also described and discussed below. Pillai, T. Gottfried, 2009. Descriptions of new serpulid polychaetes from the Kimberleys of Australia and discussion of Australian and Indo-West Pacific species ofSpirobranchus and superficially similar taxa.Records of the Australian Museum 61(2): 93–199. Table of contents Introduction ................................................................................................................... 95 Material and methods .................................................................................................. -
Phylogenetic Relationships of Serpulidae (Annelida: Polychaeta) Based on 18S Rdna Sequence Data, and Implications for Opercular Evolution Janina Lehrkea,Ã, Harry A
ARTICLE IN PRESS Organisms, Diversity & Evolution 7 (2007) 195–206 www.elsevier.de/ode Phylogenetic relationships of Serpulidae (Annelida: Polychaeta) based on 18S rDNA sequence data, and implications for opercular evolution Janina Lehrkea,Ã, Harry A. ten Hoveb, Tara A. Macdonaldc, Thomas Bartolomaeusa, Christoph Bleidorna,1 aInstitute for Zoology, Animal Systematics and Evolution, Freie Universitaet Berlin, Koenigin-Luise-Street 1-3, 14195 Berlin, Germany bZoological Museum, University of Amsterdam, P.O. Box 94766, 1090 GT Amsterdam, The Netherlands cBamfield Marine Sciences Centre, Bamfield, British Columbia, Canada, V0R 1B0 Received 19 December 2005; accepted 2 June 2006 Abstract Phylogenetic relationships of (19) serpulid taxa (including Spirorbinae) were reconstructed based on 18S rRNA gene sequence data. Maximum likelihood, Bayesian inference, and maximum parsimony methods were used in phylogenetic reconstruction. Regardless of the method used, monophyly of Serpulidae is confirmed and four monophyletic, well- supported major clades are recovered: the Spirorbinae and three groups hitherto referred to as the Protula-, Serpula-, and Pomatoceros-group. Contrary to the taxonomic literature and the hypothesis of opercular evolution, the Protula- clade contains non-operculate (Protula, Salmacina) and operculate taxa both with pinnulate and non-pinnulate peduncle (Filograna vs. Vermiliopsis), and most likely is the sister group to Spirorbinae. Operculate Serpulinae and poorly or non-operculate Filograninae are paraphyletic. It is likely that lack of opercula in some serpulid genera is not a plesiomorphic character state, but reflects a special adaptation. r 2007 Gesellschaft fu¨r Biologische Systematik. Published by Elsevier GmbH. All rights reserved. Keywords: Serpulidae; Phylogeny; Operculum; 18S rRNA gene; Annelida; Polychaeta Introduction distinctive calcareous tubes and bilobed tentacular crowns, each with numerous radioles that bear shorter Serpulids are common members of marine hard- secondary branches (pinnules) on the inner side. -
Ascidiacea (Chordata: Tunicata) of Greece: an Updated Checklist
Biodiversity Data Journal 4: e9273 doi: 10.3897/BDJ.4.e9273 Taxonomic Paper Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist Chryssanthi Antoniadou‡, Vasilis Gerovasileiou§§, Nicolas Bailly ‡ Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece § Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Greece Corresponding author: Chryssanthi Antoniadou ([email protected]) Academic editor: Christos Arvanitidis Received: 18 May 2016 | Accepted: 17 Jul 2016 | Published: 01 Nov 2016 Citation: Antoniadou C, Gerovasileiou V, Bailly N (2016) Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist. Biodiversity Data Journal 4: e9273. https://doi.org/10.3897/BDJ.4.e9273 Abstract Background The checklist of the ascidian fauna (Tunicata: Ascidiacea) of Greece was compiled within the framework of the Greek Taxon Information System (GTIS), an application of the LifeWatchGreece Research Infrastructure (ESFRI) aiming to produce a complete checklist of species recorded from Greece. This checklist was constructed by updating an existing one with the inclusion of recently published records. All the reported species from Greek waters were taxonomically revised and cross-checked with the Ascidiacea World Database. New information The updated checklist of the class Ascidiacea of Greece comprises 75 species, classified in 33 genera, 12 families, and 3 orders. In total, 8 species have been added to the previous species list (4 Aplousobranchia, 2 Phlebobranchia, and 2 Stolidobranchia). Aplousobranchia was the most speciose order, followed by Stolidobranchia. Most species belonged to the families Didemnidae, Polyclinidae, Pyuridae, Ascidiidae, and Styelidae; these 4 families comprise 76% of the Greek ascidian species richness. The present effort revealed the limited taxonomic research effort devoted to the ascidian fauna of Greece, © Antoniadou C et al. -
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MarLIN Marine Information Network Information on the species and habitats around the coasts and sea of the British Isles Novocrania anomala, Dendrodoa grossularia and Sarcodictyon roseum on variable salinity circalittoral rock MarLIN – Marine Life Information Network Marine Evidence–based Sensitivity Assessment (MarESA) Review John Readman 2016-03-31 A report from: The Marine Life Information Network, Marine Biological Association of the United Kingdom. Please note. This MarESA report is a dated version of the online review. Please refer to the website for the most up-to-date version [https://www.marlin.ac.uk/habitats/detail/264]. All terms and the MarESA methodology are outlined on the website (https://www.marlin.ac.uk) This review can be cited as: Readman, J.A.J., 2016. [Novocrania anomala], [Dendrodoa grossularia] and [Sarcodictyon roseum] on variable salinity circalittoral rock. In Tyler-Walters H. and Hiscock K. (eds) Marine Life Information Network: Biology and Sensitivity Key Information Reviews, [on-line]. Plymouth: Marine Biological Association of the United Kingdom. DOI https://dx.doi.org/10.17031/marlinhab.264.1 The information (TEXT ONLY) provided by the Marine Life Information Network (MarLIN) is licensed under a Creative Commons Attribution-Non-Commercial-Share Alike 2.0 UK: England & Wales License. Note that images and other media featured on this page are each governed by their own terms and conditions and they may or may not be available for reuse. Permissions beyond the scope of this license are available here. Based -
1 Phylogeny of the Families Pyuridae and Styelidae (Stolidobranchiata
* Manuscript 1 Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) 2 inferred from mitochondrial and nuclear DNA sequences 3 4 Pérez-Portela Ra, b, Bishop JDDb, Davis ARc, Turon Xd 5 6 a Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 7 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 8 9 b Marine Biological Association of United Kingdom, The Laboratory Citadel Hill, PL1 10 2PB, Plymouth, UK, and School of Biological Sciences, University of Plymouth PL4 11 8AA, Plymouth, UK 12 13 c School of Biological Sciences, University of Wollongong, Wollongong NSW 2522 14 Australia 15 16 d Centre d’Estudis Avançats de Blanes (CSIC), Accés a la Cala St. Francesc 14, Blanes, 17 Girona, E-17300, Spain 18 19 Email addresses: 20 Bishop JDD: [email protected] 21 Davis AR: [email protected] 22 Turon X: [email protected] 23 24 Corresponding author: 25 Rocío Pérez-Portela 26 Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 27 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 28 Phone: + 351 21 8811226 29 Fax: + 351 21 8860954 30 [email protected] 31 1 32 Abstract 33 34 The Order Stolidobranchiata comprises the families Pyuridae, Styelidae and Molgulidae. 35 Early molecular data was consistent with monophyly of the Stolidobranchiata and also 36 the Molgulidae. Internal phylogeny and relationships between Styelidae and Pyuridae 37 were inconclusive however. In order to clarify these points we used mitochondrial and 38 nuclear sequences from 31 species of Styelidae and 25 of Pyuridae. Phylogenetic trees 39 recovered the Pyuridae as a monophyletic clade, and their genera appeared as 40 monophyletic with the exception of Pyura. -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
Annelida, Serpulidae
Graellsia, 72(2): e053 julio-diciembre 2016 ISSN-L: 0367-5041 http://dx.doi.org/10.3989/graellsia.2016.v72.120 SERPÚLIDOS (ANNELIDA, SERPULIDAE) COLECTADOS EN LA CAMPAÑA OCEANOGRÁFICA “FAUNA II” Y CATÁLOGO ACTUALIZADO DE ESPECIES ÍBERO-BALEARES DE LA FAMILIA SERPULIDAE Jesús Alcázar* & Guillermo San Martín Departamento de Biología (Zoología), Facultad de Ciencias, Universidad Autónoma de Madrid, calle Darwin, 2, Canto Blanco, 28049 Madrid, España. *Dirección para la correspondencia: [email protected] RESUMEN Se presentan los resultados de la identificación del material de la familia Serpulidae (Polychaeta) recolectado en la campaña oceanográfica Fauna II, así como la revisión de citas de presencia íbero-balear desde el catálogo de poliquetos más reciente (Ariño, 1987). Se identificaron 16 especies pertenecientes a 10 géneros, además de la primera cita íbero-balear de una quimera bioperculada (Ten Hove & Ben-Eliahu, 2005) de la especie Hydroides norvegicus Gunnerus, 1768. En cuanto a la revisión del catálogo se mencionan 65 especies, actuali- zando el nombre de 20 de ellas y añadiendo cinco especies ausentes en el catálogo de Ariño (1987): Hydroides stoichadon Zibrowius, 1971, Laeospira corallinae (de Silva & Knight-Jones, 1962), Serpula cavernicola Fassari & Mòllica, 1991, Spirobranchus lima (Grube, 1862) y Spirorbis inornatus L’Hardy & Quièvreux, 1962. Se cita por primera vez Vermiliopsis monodiscus Zibrowius, 1968 en el Atlántico ibérico y a partir de la bibliografía consultada, se muestra la expansión en la distribución íbero-balear -
Ecological Aspects of the Ascidian Community Along the Israeli Coasts
Ecological aspects of the ascidian community along the Israeli coasts THESIS SUBMITTED FOR THE DEGREE “DOCTOR OF PHILOSOPHY” BY Noa Shenkar SUBMITTED TO THE SENATE OF TEL-AVIV UNIVERSITY February 2008 This work was carried out under the supervision of Prof. Yossi Loya This work is dedicated with enormous love to Dror & little Ido תודות Acknowledgments I would like to express my gratitude to many people who helped me during this research. לפרופ' יוסי לויה שזכיתי להיות תלמידתו ולימד אותי מלבד אקולוגיה וביולוגיה ימית גם דבר או שניים על איך להיות בן - אדם. לחברי הועדה המלווה: פרופ' הודי בניהו, פרופ' יאיר אחיטוב ופרופ' אלי גפן שתמכו וייעצו ודלתם תמיד היתה פתוחה בפני . לד"ר אסתי וינטר שלימדה אותי לראות את הטוב בכל דבר . לפרופ' לב פישלזון שהתמזל מזלי להיות שכנתו ולימד אותי מהי זואולוגיה. To my colleagues abroad: To Charlie & Gretchen Lambert for their enthusiasm and love to ascidians. To Patricia Mather (née Kott) for her advice and support. To Elsa Vàzquez Otero, Rosana Moreira da Rocha and Françoise Monniot for teaching me ascidian taxonomy with great love and care. To Xavier Turon for his constructive remarks and to Amy Driskell for helping me with the PCR game. לחברי מעבדתי שליוו אותי לאורך השנים ועזרו בכל עת, ובמיוחד לעומרי בורנשטיין, אלן דניאל, מיה ויזל, עידו מזרחי, רועי סגל, רן סולם ומיכה רוזנפלד. לחברי מעבדת בניהו, יעל זלדמן, מתי הלפרין, ענבל גינסבורג ועידו סלע שתמיד יצאו בשמחה למשימות דיגום איצטלנים מולחברי עבדתו של פרופ' מיכה אילן על החברה והעוגיות . לד"ר איציק בריקנר על החתכים ההיסטולוגים המופלאים, ורדה ווכסלר על הגרפיקה, נעמי פז על העריכה וההגהה, אלכס שלגמן על העזרה הלבבית עם האוספים, וענת גלזר מחברת החשמל. -
An EST Screen from the Annelid Pomatoceros Lamarckii Reveals
BMC Evolutionary Biology BioMed Central Research article Open Access An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals Tokiharu Takahashi*1,4, Carmel McDougall2,4,6, Jolyon Troscianko3, Wei- Chung Chen4, Ahamarshan Jayaraman-Nagarajan5, Sebastian M Shimeld4 and David EK Ferrier*2,4 Address: 1Faculty of Life Sciences, University of Manchester, Oxford Road, Manchester, UK, 2The Scottish Oceans Institute, University of St. Andrews, St. Andrews, Fife, UK, 3Centre for Ornithology, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, UK, 4Department of Zoology, University of Oxford, South Parks Road, Oxford, UK, 5Department of Biochemistry, University of Oxford, South Parks Road, Oxford, UK and 6School of Biological Sciences, University of Queensland, St Lucia, Queensland, Australia Email: Tokiharu Takahashi* - [email protected]; Carmel McDougall - [email protected]; Jolyon Troscianko - [email protected]; Wei-Chung Chen - [email protected]; Ahamarshan Jayaraman- Nagarajan - [email protected]; Sebastian M Shimeld - [email protected]; David EK Ferrier* - dekf@st- andrews.ac.uk * Corresponding authors Published: 25 September 2009 Received: 1 April 2009 Accepted: 25 September 2009 BMC Evolutionary Biology 2009, 9:240 doi:10.1186/1471-2148-9-240 This article is available from: http://www.biomedcentral.com/1471-2148/9/240 © 2009 Takahashi et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. -
2016 North Sea Expedition: PRELIMINARY REPORT
2016 North Sea Expedition: PRELIMINARY REPORT February, 2017 All photos contained in this report are © OCEANA/Juan Cuetos OCEANA ‐ 2016 North Sea Expedition Preliminary Report INDEX 1. INTRODUCTION ..................................................................................................................... 2 1.1 Objective ............................................................................................................................. 3 2. METHODOLOGY .................................................................................................................... 4 3. RESULTS ................................................................................................................................. 6 a. Area 1: Transboundary Area ............................................................................................. 7 b. Area 2: Norwegian trench ............................................................................................... 10 4. ANNEX – PHOTOS ................................................................................................................ 31 1 OCEANA ‐ 2016 North Sea Expedition Preliminary Report 1. INTRODUCTION The North Sea is one of the most productive seas in the world, with a wide range of plankton, fish, seabirds, and organisms that live on the seafloor. It harbours valuable marine ecosystems like cold water reefs and seagrass meadows, and rich marine biodiversity including whales, dolphins, sharks and a wealth of commercial fish species. It is also of high socio‐ -
Tube Ultrastructure of Pomatoceros Americanus (Polychaeta, Serpulidae): Implications for the Tube Formation of Serpulids
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Directory of Open Access Journals Estonian Journal of Earth Sciences, 2009, 58, 2, 148–152 doi:10.3176/earth.2009.2.05 Tube ultrastructure of Pomatoceros americanus (Polychaeta, Serpulidae): implications for the tube formation of serpulids Olev Vinna, Kalle Kirsimäea, and Harry A. ten Hoveb a Department of Geology, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia; [email protected] b Zoological Museum, University of Amsterdam, POB 94766, 1090 GT Amsterdam, the Netherlands Received 3 December 2008, accepted 27 February 2009 Abstract. The inner tube layer of Pomatoceros americanus has a complex oriented ultrastructure, which cannot be explained by the standard granular secretion model, predicting a largely unoriented structure of the tube. In the lamello-fibrillar structure of the inner tube layer, the crystallization axis of crystals has a uniform orientation, which is not continuous through successive growth increments. The complex biomineral structures of P. americanus suggest a matrix-controlled crystallization model rather than solidification of a slurry with calcareous granules deposited on the tube aperture. Key words: Serpulidae, biomineralization, tube ultrastructure, tube formation. INTRODUCTION dimensions of 0.15–0.2 µm on a side. The granules are composed of a fibrous organic matrix in which needle- Among polychaetes, calcareous tubes occur in serpulids, like low magnesium calcite crystals are deposited (Neff sabellids, and cirratulids (Fischer et al. 2000; Vinn et al. 1971a). According to this model, the calcareous granules 2008a). Serpulids construct their tubes from a mixture contribute importantly to the formation of the tube in of calcium carbonate and an organic matrix (Hedley which the animal lives.