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Bacteria Associated with Tunicate, Polycarpa Aurata, from Lease Sea, Maluku, Indonesia Exhibiting Anti-Multidrug Resistant Bacteria
BIODIVERSITAS ISSN: 1412-033X Volume 20, Number 4, April 2019 E-ISSN: 2085-4722 Pages: 956-964 DOI: 10.13057/biodiv/d200404 Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria DIAH AYUNINGRUM1,5, RHESI KRISTIANA1, AYUNDA AINUN NISA2, SEPTHY KUSUMA RADJASA2, SAKTI IMAM MUCHLISSIN2,4, OCKY KARNA RADJASA2,3, AGUS SABDONO2, AGUS TRIANTO2, 1Department of Coastal Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia 2Department of Marine Science, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedarto, SH, Tembalang, Semarang 50275, Central Java, Indonesia. Tel.: +62-24-7474698, Fax.: +62-24-7474698, email: [email protected]. 3Directorate of Research and Community Services, Ministry of Research, Technology and Higher Education. D Building, Jl. Jenderal Sudirman Pintu Satu, Senayan, Jakarta Pusat 10279, Indonesia 4Tropical Marine Biotechnology Laboratory, Universitas Diponegoro Jl. Lingkar Utara Undip, Semarang 50275, Central Java, Indonesia 1Department of Aquatic Resource Management, Faculty of Fisheries and Marine Science, Universitas Diponegoro. Jl. Prof. Soedharto SH, Semarang 50275, Central Java, Indonesia Manuscript received: 30 January 2019. Revision accepted: 10 March 2019. Abstract. Ayuningrum D, Kristiana R, Nisa AA, Radjasa SK, Muchlissin SI, Radjasa OK, Sabdono A, Trianto A. 2019. Bacteria associated with tunicate, Polycarpa aurata, from Lease Sea, Maluku, Indonesia exhibiting anti-multidrug resistant bacteria. Biodiversitas 20: 956-964. Tunicate is a rich secondary metabolites producer with various biological activities whether as an original producer or produced by the associated microorganisms. In this study, a total of 11 tunicate specimens were identified as Polycarpa aurata with four color variations based on morphological characteristic and COI gene identification and BLAST analysis. -
Calcium Carbonate Biomineralisation in Disparate Systems - Common Mechanisms?
England, Jennifer Katherine (2005) Calcium carbonate biomineralisation in disparate systems - common mechanisms? PhD thesis http://theses.gla.ac.uk/4024/ Copyright and moral rights for this thesis are retained by the author A copy can be downloaded for personal non-commercial research or study, without prior permission or charge This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the Author The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the Author When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given Glasgow Theses Service http://theses.gla.ac.uk/ [email protected] Calcium Carbonate Biomineralisation in Disparate Systems - Common Mechanisms? Jennifer Katherine England A thesis submitted for the degree of Doctor of Philosophy Division of Earth Sciences, Centre for Geosciences, University of Glasgow March 2005 © Jennifer England 2005 Abstract Biominerals are composite materials in which orgaruc components control mineral nucleation and structure. Calcium minerals account for over 50% of biominerals, with calcium carbonate being the most common type. This study considers the extent to which four calcium carbonate biomineral systems share common characteristics. Within the sample set, there is a range of ultrastructures and two types of calcium carbonate polymorph (calcite and aragonite). The mini survey includes three invertebrate systems: two members of the Phylum Brachiopoda; the articulated brachiopod Terebratulina retusa (Subphylum Rhynchonelliformea) and the inarticulated brachiopod Novocrania anomala (Subphylum Craniiformea), and a member of the. Mollusca, the bivalve Mytilus edulis. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Ascidiacea (Chordata: Tunicata) of Greece: an Updated Checklist
Biodiversity Data Journal 4: e9273 doi: 10.3897/BDJ.4.e9273 Taxonomic Paper Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist Chryssanthi Antoniadou‡, Vasilis Gerovasileiou§§, Nicolas Bailly ‡ Department of Zoology, School of Biology, Aristotle University of Thessaloniki, Thessaloniki, Greece § Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research, Heraklion, Greece Corresponding author: Chryssanthi Antoniadou ([email protected]) Academic editor: Christos Arvanitidis Received: 18 May 2016 | Accepted: 17 Jul 2016 | Published: 01 Nov 2016 Citation: Antoniadou C, Gerovasileiou V, Bailly N (2016) Ascidiacea (Chordata: Tunicata) of Greece: an updated checklist. Biodiversity Data Journal 4: e9273. https://doi.org/10.3897/BDJ.4.e9273 Abstract Background The checklist of the ascidian fauna (Tunicata: Ascidiacea) of Greece was compiled within the framework of the Greek Taxon Information System (GTIS), an application of the LifeWatchGreece Research Infrastructure (ESFRI) aiming to produce a complete checklist of species recorded from Greece. This checklist was constructed by updating an existing one with the inclusion of recently published records. All the reported species from Greek waters were taxonomically revised and cross-checked with the Ascidiacea World Database. New information The updated checklist of the class Ascidiacea of Greece comprises 75 species, classified in 33 genera, 12 families, and 3 orders. In total, 8 species have been added to the previous species list (4 Aplousobranchia, 2 Phlebobranchia, and 2 Stolidobranchia). Aplousobranchia was the most speciose order, followed by Stolidobranchia. Most species belonged to the families Didemnidae, Polyclinidae, Pyuridae, Ascidiidae, and Styelidae; these 4 families comprise 76% of the Greek ascidian species richness. The present effort revealed the limited taxonomic research effort devoted to the ascidian fauna of Greece, © Antoniadou C et al. -
1 Phylogeny of the Families Pyuridae and Styelidae (Stolidobranchiata
* Manuscript 1 Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) 2 inferred from mitochondrial and nuclear DNA sequences 3 4 Pérez-Portela Ra, b, Bishop JDDb, Davis ARc, Turon Xd 5 6 a Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 7 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 8 9 b Marine Biological Association of United Kingdom, The Laboratory Citadel Hill, PL1 10 2PB, Plymouth, UK, and School of Biological Sciences, University of Plymouth PL4 11 8AA, Plymouth, UK 12 13 c School of Biological Sciences, University of Wollongong, Wollongong NSW 2522 14 Australia 15 16 d Centre d’Estudis Avançats de Blanes (CSIC), Accés a la Cala St. Francesc 14, Blanes, 17 Girona, E-17300, Spain 18 19 Email addresses: 20 Bishop JDD: [email protected] 21 Davis AR: [email protected] 22 Turon X: [email protected] 23 24 Corresponding author: 25 Rocío Pérez-Portela 26 Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 27 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 28 Phone: + 351 21 8811226 29 Fax: + 351 21 8860954 30 [email protected] 31 1 32 Abstract 33 34 The Order Stolidobranchiata comprises the families Pyuridae, Styelidae and Molgulidae. 35 Early molecular data was consistent with monophyly of the Stolidobranchiata and also 36 the Molgulidae. Internal phylogeny and relationships between Styelidae and Pyuridae 37 were inconclusive however. In order to clarify these points we used mitochondrial and 38 nuclear sequences from 31 species of Styelidae and 25 of Pyuridae. Phylogenetic trees 39 recovered the Pyuridae as a monophyletic clade, and their genera appeared as 40 monophyletic with the exception of Pyura. -
Lithology Could Affect Benthic Communities Living Below Boulders
Journal of the Marine Lithology could affect benthic communities Biological Association of the United Kingdom living below boulders 1 1 2 2 1 cambridge.org/mbi M. Canessa , G. Bavestrello , E. Trainito , A. Navone and R. Cattaneo-Vietti 1Dipartimento di Scienze della Terra dell’Ambiente e della Vita (DISTAV), Università di Genova, Corso Europa, 26 −16132 Genova, Italy and 2Tavolara-Punta Coda Cavallo MPA, Via San Giovanni, 14 – 07026 Olbia, Italy Review Abstract Cite this article: Canessa M, Bavestrello G, Structure and diversity of sessile zoobenthic assemblages seem to be driven not only by chem- Trainito E, Navone A, Cattaneo-Vietti R (2020). ical-physical constraints and biological interactions but also by substrate lithology and its sur- Lithology could affect benthic communities face features. Nevertheless, broadly distributed crustose epilithic corallines could mask the role living below boulders. Journal of the Marine of substrate on animal settling. To evaluate the direct influence of different rocky substrates, Biological Association of the United Kingdom occurrence and coverage of several sessile species, growing on the dark (i.e. coralline-free) face 100, 879–888. https://doi.org/10.1017/ S0025315420000818 of sublittoral limestone and granite boulders were compared in the Tavolara MPA (Mediterranean Sea). The analysis of photographic samples demonstrated significant differ- Received: 9 January 2020 ences in terms of species composition and coverage, according to lithology. Moreover, lime- Revised: 30 July 2020 stone boulders were widely bare, while the cover per cent was almost total on granite. The Accepted: 10 August 2020 First published online: 11 September 2020 leading cause of observed patterns could be the different level of dissolution of the two types of rocks, due to their different mineral composition and textural characteristics. -
Redalyc.Keys for the Identification of Families and Genera of Atlantic
Biota Neotropica ISSN: 1676-0611 [email protected] Instituto Virtual da Biodiversidade Brasil Moreira da Rocha, Rosana; Bastos Zanata, Thais; Moreno, Tatiane Regina Keys for the identification of families and genera of Atlantic shallow water ascidians Biota Neotropica, vol. 12, núm. 1, enero-marzo, 2012, pp. 1-35 Instituto Virtual da Biodiversidade Campinas, Brasil Available in: http://www.redalyc.org/articulo.oa?id=199123750022 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Keys for the identification of families and genera of Atlantic shallow water ascidians Rocha, R.M. et al. Biota Neotrop. 2012, 12(1): 000-000. On line version of this paper is available from: http://www.biotaneotropica.org.br/v12n1/en/abstract?identification-key+bn01712012012 A versão on-line completa deste artigo está disponível em: http://www.biotaneotropica.org.br/v12n1/pt/abstract?identification-key+bn01712012012 Received/ Recebido em 16/07/2011 - Revised/ Versão reformulada recebida em 13/03/2012 - Accepted/ Publicado em 14/03/2012 ISSN 1676-0603 (on-line) Biota Neotropica is an electronic, peer-reviewed journal edited by the Program BIOTA/FAPESP: The Virtual Institute of Biodiversity. This journal’s aim is to disseminate the results of original research work, associated or not to the program, concerned with characterization, conservation and sustainable use of biodiversity within the Neotropical region. Biota Neotropica é uma revista do Programa BIOTA/FAPESP - O Instituto Virtual da Biodiversidade, que publica resultados de pesquisa original, vinculada ou não ao programa, que abordem a temática caracterização, conservação e uso sustentável da biodiversidade na região Neotropical. -
Ecological Aspects of the Ascidian Community Along the Israeli Coasts
Ecological aspects of the ascidian community along the Israeli coasts THESIS SUBMITTED FOR THE DEGREE “DOCTOR OF PHILOSOPHY” BY Noa Shenkar SUBMITTED TO THE SENATE OF TEL-AVIV UNIVERSITY February 2008 This work was carried out under the supervision of Prof. Yossi Loya This work is dedicated with enormous love to Dror & little Ido תודות Acknowledgments I would like to express my gratitude to many people who helped me during this research. לפרופ' יוסי לויה שזכיתי להיות תלמידתו ולימד אותי מלבד אקולוגיה וביולוגיה ימית גם דבר או שניים על איך להיות בן - אדם. לחברי הועדה המלווה: פרופ' הודי בניהו, פרופ' יאיר אחיטוב ופרופ' אלי גפן שתמכו וייעצו ודלתם תמיד היתה פתוחה בפני . לד"ר אסתי וינטר שלימדה אותי לראות את הטוב בכל דבר . לפרופ' לב פישלזון שהתמזל מזלי להיות שכנתו ולימד אותי מהי זואולוגיה. To my colleagues abroad: To Charlie & Gretchen Lambert for their enthusiasm and love to ascidians. To Patricia Mather (née Kott) for her advice and support. To Elsa Vàzquez Otero, Rosana Moreira da Rocha and Françoise Monniot for teaching me ascidian taxonomy with great love and care. To Xavier Turon for his constructive remarks and to Amy Driskell for helping me with the PCR game. לחברי מעבדתי שליוו אותי לאורך השנים ועזרו בכל עת, ובמיוחד לעומרי בורנשטיין, אלן דניאל, מיה ויזל, עידו מזרחי, רועי סגל, רן סולם ומיכה רוזנפלד. לחברי מעבדת בניהו, יעל זלדמן, מתי הלפרין, ענבל גינסבורג ועידו סלע שתמיד יצאו בשמחה למשימות דיגום איצטלנים מולחברי עבדתו של פרופ' מיכה אילן על החברה והעוגיות . לד"ר איציק בריקנר על החתכים ההיסטולוגים המופלאים, ורדה ווכסלר על הגרפיקה, נעמי פז על העריכה וההגהה, אלכס שלגמן על העזרה הלבבית עם האוספים, וענת גלזר מחברת החשמל. -
Ground Plan of the Larval Nervous System in Phoronids: Evidence from Larvae of Viviparous Phoronid
DOI: 10.1111/ede.12231 RESEARCH PAPER Ground plan of the larval nervous system in phoronids: Evidence from larvae of viviparous phoronid Elena N. Temereva Department of Invertebrate Zoology, Biological Faculty, Moscow State Nervous system organization differs greatly in larvae and adults of many species, but University, Moscow, Russia has nevertheless been traditionally used for phylogenetic studies. In phoronids, the organization of the larval nervous system depends on the type of development. With Correspondence Elena N. Temereva, Department of the goal of understanding the ground plan of the nervous system in phoronid larvae, the Invertebrate Zoology, Biological Faculty, development and organization of the larval nervous system were studied in a viviparous Moscow State University, Moscow 119991, phoronid species. The ground plan of the phoronid larval nervous system includes an Russia. Email: [email protected] apical organ, a continuous nerve tract under the preoral and postoral ciliated bands, and two lateral nerves extending between the apical organ and the nerve tract. A bilobed Funding information Russian Foundation for Basic Research, larva with such an organization of the nervous system is suggested to be the primary Grant numbers: 15-29-02601, 17-04- larva of the taxonomic group Brachiozoa, which includes the phyla Brachiopoda and 00586; Russian Science Foundation, Phoronida. The ground plan of the nervous system of phoronid larvae is similar to that Grant number: 14-50-00029 of the early larvae of annelids and of some deuterostomians. The protostome- and deuterostome-like features, which are characteristic of many organ systems in phoronids, were probably inherited by phoronids from the last common bilaterian ancestor. -
Atlantic Area Eunis Habitats Adding New Habitat Types from European Atlantic Coast to the EUNIS Habitat Classification
Atlantic Area Eunis Habitats Adding new habitat types from European Atlantic coast to the EUNIS Habitat Classification MeshAtlantic Technical Report Nº 3/2013 September 2013 Atlantic Area Eunis Habitats Adding new habitat types from European Atlantic coast to the EUNIS Habitat Classification MeshAtlantic Technical Report Nº 3/2013 September 2013 Citation: Monteiro, P., Bentes, L., Oliveira, F., Afonso, C., Rangel, M., Alonso, C., Mentxaka, I., Germán Rodríguez, J., Galparsoro, I., Borja, A., Chacón, D., Sanz Alonso, J.L., Guerra, M.T., Gaudêncio, M.J., Mendes, B., Henriques, V., Bajjouk, T., Bernard, M., Hily, C., Vasquez, M., Populus, J., Gonçalves, J.M.S. (2013). Atlantic Area Eunis Habitats. Adding new habitat types from European Atlantic coast to the EUNIS Habitat Classification. Technical Report No.3/2013 - MeshAtlantic, CCMAR-Universidade do Algarve, Faro, 72 pp.. CONTENTS SUMMARY ............................................................................................................................. 1 INTRODUCTION ..................................................................................................................... 1 OBJECTIVES ................................................................................................................... 1 CASE STUDIES ........................................................................................................................ 2 CASE STUDY 1 Portugal - Algarve ...........................................................................................2 INTRODUCTION -
On the History of the Names Lingula, Anatina, and on the Confusion of the Forms Assigned Them Among the Brachiopoda Christian Emig
On the history of the names Lingula, anatina, and on the confusion of the forms assigned them among the Brachiopoda Christian Emig To cite this version: Christian Emig. On the history of the names Lingula, anatina, and on the confusion of the forms assigned them among the Brachiopoda. Carnets de Geologie, Carnets de Geologie, 2008, CG2008 (A08), pp.1-13. <hal-00346356> HAL Id: hal-00346356 https://hal.archives-ouvertes.fr/hal-00346356 Submitted on 11 Dec 2008 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Carnets de Géologie / Notebooks on Geology - Article 2008/08 (CG2008_A08) On the history of the names Lingula, anatina, and on the confusion of the forms assigned them among the Brachiopoda 1 Christian C. EMIG Abstract: The first descriptions of Lingula were made from then extant specimens by three famous French scientists: BRUGUIÈRE, CUVIER, and LAMARCK. The genus Lingula was created in 1791 (not 1797) by BRUGUIÈRE and in 1801 LAMARCK named the first species L. anatina, which was then studied by CUVIER (1802). In 1812 the first fossil lingulids were discovered in the Mesozoic and Palaeozoic strata of the U.K. -
2016 North Sea Expedition: PRELIMINARY REPORT
2016 North Sea Expedition: PRELIMINARY REPORT February, 2017 All photos contained in this report are © OCEANA/Juan Cuetos OCEANA ‐ 2016 North Sea Expedition Preliminary Report INDEX 1. INTRODUCTION ..................................................................................................................... 2 1.1 Objective ............................................................................................................................. 3 2. METHODOLOGY .................................................................................................................... 4 3. RESULTS ................................................................................................................................. 6 a. Area 1: Transboundary Area ............................................................................................. 7 b. Area 2: Norwegian trench ............................................................................................... 10 4. ANNEX – PHOTOS ................................................................................................................ 31 1 OCEANA ‐ 2016 North Sea Expedition Preliminary Report 1. INTRODUCTION The North Sea is one of the most productive seas in the world, with a wide range of plankton, fish, seabirds, and organisms that live on the seafloor. It harbours valuable marine ecosystems like cold water reefs and seagrass meadows, and rich marine biodiversity including whales, dolphins, sharks and a wealth of commercial fish species. It is also of high socio‐