Families, Genera, and Species of Botryosphaeriales
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<I>Barriopsis Iraniana</I>
Persoonia 23, 2009: 1–8 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158509X467552 Barriopsis iraniana and Phaeobotryon cupressi: two new species of the Botryosphaeriaceae from trees in Iran J. Abdollahzadeh1, E. Mohammadi Goltapeh1, A. Javadi2, M. Shams-bakhsh1, R. Zare2, A.J.L. Phillips3 Key words Abstract Species in the Botryosphaeriaceae are well known as pathogens and saprobes of woody hosts, but little is known about the species that occur in Iran. In a recent survey of this family in Iran two fungi with diplodia-like Citrus anamorphs were isolated from various tree hosts. These two fungi were fully characterised in terms of morphology EF 1-α of the anamorphs in culture, and sequences of the ITS1/ITS2 regions of the ribosomal DNA operon and partial ITS sequences of the translation elongation factor 1- . Phylogenetic analyses placed them within a clade consisting of Mangifera α Barriopsis and Phaeobotryon species, but they were clearly distinct from known species in these genera. There- Olea fore, they are described here as two new species, namely Barriopsis iraniana on Citrus, Mangifera and Olea, and phylogeny Phaeobotryon cupressi on Cupressus sempervirens. systematics taxonomy Article info Received: 27 April 2009; Accepted: 17 June 2009; Published: 16 July 2009. INTRODUCTION (Slippers et al. 2004), Olea (Lazzizera et al. 2008), Prunus (Slippers et al. 2007, Damm et al. 2007) and Protea (Denman Species of the Botryosphaeriaceae are cosmopolitan and occur et al. 2003, Marincowitz et al. 2008). Such studies have yielded on a wide range of plant hosts (von Arx & Müller 1954, Barr several new species, thus revealing the diversity within this 1987). -
Diplodia Corticola FERNANDES
Universidade de Aveiro Departamento de Biologia 2015 ISABEL OLIVEIRA Mecanismo de infecção de Diplodia corticola FERNANDES Infection mechanism of Diplodia corticola A tese foi realizada em regime de co-tutela com a Universidade de Ghent na Bélgica. The thesis was realized in co-tutelle regime (Joint PhD) with the Ghent University in Belgium. Universidade de Aveiro Departamento de Biologia 2015 ISABEL OLIVEIRA Mecanismo de infecção de Diplodia corticola FERNANDES Infection mechanism of Diplodia corticola Tese apresentada à Universidade de Aveiro para cumprimento dos requisitos necessários à obtenção do grau de Doutor em Biologia, realizada sob a orientação científica da Doutora Ana Cristina de Fraga Esteves, Professora Auxiliar Convidada do Departamento de Biologia da Universidade de Aveiro e co-orientações do Doutor Artur Jorge da Costa Peixoto Alves, Investigador Principal do Departamento de Biologia da Universidade de Aveiro e do Doutor Bart Devreese, Professor Catedrático do Departamento de Bioquímica e Microbiologia da Universidade de Ghent. A tese foi realizada em regime de co-tutela com a Universidade de Ghent. Apoio financeiro da FCT e do Apoio financeiro da FCT e do FSE no FEDER através do programa âmbito do III Quadro Comunitário de COMPETE no âmbito do projecto de Apoio. investigação PROMETHEUS. Bolsa com referência BD/66223/2009 Bolsas com referência: PTDC/AGR-CFL/113831/2009 FCOMP-01-0124-FEDER-014096 Perguntaste-me um dia o que pretendia fazer a seguir, Respondi-te simplesmente que gostaria de ir mais além, Assim fiz! Gostava que me perguntasses de novo... Ao meu pai, You asked me one day what I intended to do next, I simply answered you that I would like to go further, I did so! I would like you ask me again.. -
Botryosphaeria Infections in New Zealand Grapevine Nurseries: Sources of Inoculum and Infection Pathways
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Botryosphaeria infections in New Zealand grapevine nurseries: Sources of inoculum and infection pathways A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy in Plant Pathology by Regina Billones-Baaijens Lincoln University 2011 Abstract of a thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy in Plant Pathology Abstract Botryosphaeria infections in New Zealand grapevine nurseries: Inoculum sources and infection pathways by Regina Billones-Baaijens The botryosphaeriaceous fungi can cause decline, dieback and death of grapevines. Anecdotal evidence has indicated that these pathogens might be present in the young vines sold by propagation nurseries, so this study investigated their role in spread of this disease. Sampling of grapevine nurseries across New Zealand showed that botryosphaeriaceous infections were present in eight out of nine nurseries with infection incidence ranging from 5 to 63%. Of the 311 propagation materials and plants received, 23% were positive for botryosphaeriaceous infection, with a total of 120 isolates recovered. -
New Ascomycetes Associated with Grapevine Dieback in Algeria
Jordan Journal of Agricultural Sciences, Volume 11, No.2 2015 New Ascomycetes Associated with Grapevine Dieback in Algeria Faiza Ammad1,2, Messaoud Benchabane2 and Mohamed Toumi1 ABSTRACT This study was conducted during spring 2012 to detect the causal organism (s) responsible for a new grapevine dieback disease in Algeria. Samples of grapevine wood were collected from 10 grapevine fields located in two regions (Medea and Tipaza). Several fungi were isolated from the margin between healthy and diseased tissues. Botryosphaeria spp, were identified based on the morphological characteristics of the culture and confirmed by Beta tubulin (ß-tubulin) region. The sequences submitted to the GenBank (NCBI) under accession numbers (KC960991)( HQ660477)( AY236931), revealed 99-100% homology. Other fungal species Entoleuca mammata and Rosellinia merrilli. were also isolated at low frequency. Inoculation In vitro of grapevine plantlets, with the two Botryosphaeriaceae species, produced smallest necrosis after five-week incubation; Botryosphaeria obtsusa (Diplodia seriata) were virulent compared with B. dothidea. The species tested were re-isolated from necrosis symptoms on infected plantlets . Keywords: Algeria, grapevine dieback, Phylogenetic analysis, Pathogenicity test. INTRODUCTION Eutypa. lata, and longitudinal brown streakings along the affected tissues (Castillo-Pando et al., 2001; Taylor et al., Black dead arm (BDA) is a frequent trunk disease of 2005). BDA foliar symptoms reported by Larignon and grapevine occurring in vineyards all over the world that Dubos (2001), include an early red or yellow-orange patchy leads to a slow decline and the death of the plant. However, discoloration of the leaves (in red- and white-berried grape it is the cause of fatal decline in vine producing countries. -
Differentiation of Two Botryosphaeriaceae Species
Differentiation of two Botryosphaeriaceae species isolated from declining mango trees in Ghana Honger, J.O1*., Ablomerti F.K2., Coleman, S.R3., Cornelius, E.W2, Owusu, E3. and Odamtten G.T3. 1Soil and Irrigation Research Centre, College of Basic and Applied Sciences, University of Ghana. 2Department of Crop Science, College of Basic and Applied Sciences, University of Ghana 3Department of Plant and Environmental Biology, College of Basic and Applied Sciences, University of Ghana *Corresponding Author: [email protected] Abstract Lasiodiplodia theobromae is the only pathogen reported to cause mango tree decline disease in Ghana. In this study, several Botryosphaeriaceae isolates were obtained from mango tree decline disease symptoms and were identified using both phenotypic and genotypic characteristics and inoculation studies. The methods employed differentiated the isolates into two species, Lasiodiplodia theobromae and Neofussicoccum parvum. L. theobromae sporulated freely on media while N. parvum did not. Also, the species specific primer, Lt347-F/Lt347-R identified only L. theobromae while in the phylogenetic studies, L. theobromae and N. parvum clustered in different clades. L. theobromae caused dieback symptoms on inoculated mango seedlings while N. parvum did not. However, both species caused massive rot symptoms on inoculated fruits. L. theobromae was therefore confirmed as the causal agent of the tree decline disease in Ghana while N. parvum was reported for the first time as a potential pathogen of mango fruits in the country. Introduction and Lopez, 1971; Rawal, 1998; Schaffer et Mango (Mangifera indica L.) is one of the al., 1988). In India it has been reported that most important non-traditional export crops the disease had been a very significant one from Ghana, bringing in much needed foreign since 1940 (Khanzanda et al., 2004) with the exchange to the country. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Phylogeny and Morphology of Four New Species of Lasiodiplodia from Iran
Persoonia 25, 2010: 1–10 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158510X524150 Phylogeny and morphology of four new species of Lasiodiplodia from Iran J. Abdollahzadeh 1,3, A. Javadi 2, E. Mohammadi Goltapeh3, R. Zare 2, A.J.L. Phillips 4 Key words Abstract Four new species of Lasiodiplodia; L. citricola, L. gilanensis, L. hormozganensis and L. iraniensis from various tree species in Iran are described and illustrated. The ITS and partial translation elongation factor-1 se- Botryosphaeriaceae α quence data were analysed to investigate their phylogenetic relationships with other closely related species and EF-1α genera. The four new species formed well-supported clades within Lasiodiplodia and were morphologically distinct ITS from all other known species. Lasiodiplodia phylogeny Article info Received: 11 March 2010; Accepted: 29 June 2010; Published: 27 July 2010. taxonomy INTRODUCTION as synonyms of L. theobromae since he could not separate them on morphological characters. However, on account of its Members of the Botryosphaeriaceae (Botryosphaeriales, morphological variability and wide host range it seems likely that Dothideomycetes, Ascomycota) are cosmopolitan and occur L. theobromae is a species complex. Recent studies based on on a wide range of monocotyledonous, dicotyledonous and sequence data have confirmed this and eight new species have gymnosperm hosts (von Arx & Müller 1954, Barr 1987). They been described since 2004 (Pavlic et al. 2004, 2008, Burgess are associated with various symptoms such as shoot blights, et al. 2006, Damm et al. 2007, Alves et al. 2008). stem cankers, fruit rots, dieback and gummosis (von Arx 1987) There have been no studies on the Lasiodiplodia species in and are also known as endophytes (Slippers & Wingfield Iran apart from a few reports of L. -
©2015 Stephen J. Miller ALL RIGHTS RESERVED
©2015 Stephen J. Miller ALL RIGHTS RESERVED USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS. By STEPHEN J MILLER A dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Plant Biology Written under the direction of Dr. Ning Zhang And approved by _____________________________________ _____________________________________ _____________________________________ _____________________________________ _____________________________________ New Brunswick, New Jersey October 2015 ABSTRACT OF THE DISSERTATION USE OF TRADITIONAL AND METAGENOMIC METHODS TO STUDY FUNGAL DIVERSITY IN DOGWOOD AND SWITCHGRASS BY STEPHEN J MILLER Dissertation Director: Dr. Ning Zhang Fungi are the second largest kingdom of eukaryotic life, composed of diverse and ecologically important organisms with pivotal roles and functions, such as decomposers, pathogens, and mutualistic symbionts. Fungal endophyte studies have increased rapidly over the past decade, using traditional culturing or by utilizing Next Generation Sequencing (NGS) to recover fastidious or rare taxa. Despite increasing interest in fungal endophytes, there is still an enormous amount of ecological diversity that remains poorly understood. In this dissertation, I explore the fungal endophyte biodiversity associated within two plant hosts (Cornus L. species) and (Panicum virgatum L.), create a NGS pipeline, facilitating comparison between traditional culturing method and culture- independent metagenomic method. The diversity and functions of fungal endophytes inhabiting leaves of woody plants in the temperate region are not well understood. I explored the fungal biodiversity in native Cornus species of North American and Japan using traditional culturing ii techniques. Samples were collected from regions with similar climate and comparison of fungi was done using two years of collection data. -
<I>Botryosphaeriales</I>
Persoonia 33, 2014: 155–168 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158514X684780 Confronting the constraints of morphological taxonomy in the Botryosphaeriales B. Slippers1, J. Roux2, M.J. Wingfield1, F.J.J. van der Walt2, F. Jami2, J.W.M. Mehl2, G.J. Marais3 Key words Abstract Identification of fungi and the International Code of Nomenclature underpinning this process, rests strongly on the characterisation of morphological structures. Yet, the value of these characters to define species in Botryosphaeriales many groups has become questionable or even superfluous. This has emerged as DNA-based techniques have morphotaxa increasingly revealed cryptic species and species complexes. This problem is vividly illustrated in the present phylogeny study where 105 isolates of the Botryosphaeriales were recovered from both healthy and diseased woody tissues taxonomy of native Acacia spp. in Namibia and South Africa. Thirteen phylogenetically distinct groups were identified based tree health on Internal Transcribed Spacer (ITS) rDNA PCR-RFLP and translation elongation factor 1-α (TEF1-α) sequence data, two loci that are known to be reliable markers to distinguish species in the Botryosphaeriales. Four of these groups could be linked reliably to sequence data for formerly described species, including Botryosphaeria dothidea, Dothiorella dulcispinae, Lasiodiplodia pseudotheobromae and Spencermartinsia viticola. Nine groups, however, could not be linked to any other species known from culture and for which sequence data are available. These groups are, therefore, described as Aplosporella africana, A. papillata, Botryosphaeria auasmontanum, Dothiorella capri-amissi, Do. oblonga, Lasiodiplodia pyriformis, Spencermartinsia rosulata, Sphaeropsis variabilis and an un- described Neofusicoccum sp. -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
Taxonomic Utility of Old Names in Current Fungal Classification and Nomenclature: Conflicts, Confusion & Clarifications
Mycosphere 7 (11): 1622–1648 (2016) www.mycosphere.org ISSN 2077 7019 Article – special issue Doi 10.5943/mycosphere/7/11/2 Copyright © Guizhou Academy of Agricultural Sciences Taxonomic utility of old names in current fungal classification and nomenclature: Conflicts, confusion & clarifications Dayarathne MC1,2, Boonmee S1,2, Braun U7, Crous PW8, Daranagama DA1, Dissanayake AJ1,6, Ekanayaka H1,2, Jayawardena R1,6, Jones EBG10, Maharachchikumbura SSN5, Perera RH1, Phillips AJL9, Stadler M11, Thambugala KM1,3, Wanasinghe DN1,2, Zhao Q1,2, Hyde KD1,2, Jeewon R12* 1Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 2Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan China3Guizhou Key Laboratory of Agricultural Biotechnology, Guizhou Academy of Agricultural Sciences, Guiyang 550006, Guizhou, China 4Engineering Research Center of Southwest Bio-Pharmaceutical Resources, Ministry of Education, Guizhou University, Guiyang 550025, Guizhou Province, China5Department of Crop Sciences, College of Agricultural and Marine Sciences, Sultan Qaboos University, P.O. Box 34, Al-Khod 123,Oman 6Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, No 9 of ShuGuangHuaYuanZhangLu, Haidian District Beijing 100097, China 7Martin Luther University, Institute of Biology, Department of Geobotany, Herbarium, Neuwerk 21, 06099 Halle, Germany 8Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584CT Utrecht, The Netherlands. 9University of Lisbon, Faculty of Sciences, Biosystems and Integrative Sciences Institute (BioISI), Campo Grande, 1749-016 Lisbon, Portugal. 10Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, 50200, Thailand 11Helmholtz-Zentrum für Infektionsforschung GmbH, Dept. -
Aplosporella Ginkgonis (Aplosporellaceae, Botryosphaeriales), a New Species Isolated from Ginkgo Biloba in China
Mycosphere 8 (2): 1246–1252 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/2/8 Copyright © Guizhou Academy of Agricultural Sciences Aplosporella ginkgonis (Aplosporellaceae, Botryosphaeriales), a new species isolated from Ginkgo biloba in China Du Z1, Fan XL1, Yang Q1, Hyde KD2 and Tian CM 1* 1 The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand Du Z, Fan XL, Yang Q, Hyde KD, Tian CM 2017 – Aplosporella ginkgonis (Aplosporellaceae, Botryosphaeriales), a new species isolated from Ginkgo biloba in China. Mycosphere 8(2), 1246– 1252, Doi 10.5943/mycosphere/8/2/8 Abstract Aplosporella ginkgonis sp. nov., is described from symptomatic branches of Ginkgo biloba in China based on morphological and molecular analysis. It is characterized by multiloculate conidiomata, with one to four ostioles, and aseptate, brown, ellipsoid to oblong conidia. Morphological and phylogenetic analyses of ITS, and tef1-α sequence data, support the position of the new species in Aplosporella, which forms a monophyletic lineage with strong support (MP/BI = 100/1). Thus, a new species is introduced in this paper to accommodate this taxon. Key words – Ascomycetous fungi – Canker disease – Dothideomycetes – Systematics – Taxonomy Introduction Aplosporella (Aplosporellaceae) was introduced by Spegazzini (1880) and has frequently been incorrectly synonymized, especially under Haplosporella (Tilak & Rao 1964, Petrak & Sydow 1927, Tai 1979, Wei 1979). In addition, the introduction of most new species was based on host occurrence, whereas recent studies suggest that taxa in this genus are not host-specific (Fan et al.