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Molecular Systematics of Gadid Fishes: Implications for the Biogeographic Origins of Pacific Species
Color profile: Disabled Composite Default screen 19 Molecular systematics of gadid fishes: implications for the biogeographic origins of Pacific species Steven M. Carr, David S. Kivlichan, Pierre Pepin, and Dorothy C. Crutcher Abstract: Phylogenetic relationships among 14 species of gadid fishes were investigated with portions of two mitochondrial DNA (mtDNA) genes, a 401 base pair (bp) segment of the cytochrome b gene, and a 495 bp segment of the cytochrome oxidase I gene. The molecular data indicate that the three species of gadids endemic to the Pacific Basin represent simultaneous invasions by separate phylogenetic lineages. The Alaskan or walleye pollock (Theragra chalcogramma) is about as closely related to the Atlantic cod (Gadus morhua) as is the Pacific cod (Gadus macrocephalus), which suggests that T. chalcogramma and G. macrocephalus represent separate invasions of the Pacific Basin. The Pacific tomcod (Microgadus proximus) is more closely related to the Barents Sea navaga (Eleginus navaga) than to the congeneric Atlantic tomcod (Microgadus tomcod), which suggests that the Pacific species is derived from the Eleginus lineage and that Eleginus should be synonymized with Microgadus. Molecular divergences between each of the three endemic Pacific species and their respective closest relatives are similar and consistent with contemporaneous speciation events following the reopening of the Bering Strait ca. 3.0–3.5 million years BP. In contrast, the Greenland cod (Gadus ogac) and the Pacific cod have essentially identical mtDNA sequences; differences between them are less than those found within G. morhua. The Greenland cod appears to represent a contemporary northward and eastward range extension of the Pacific cod, and should be synonymized with it as G. -
Fish Waste: from Problem to Valuable Resource
marine drugs Review Fish Waste: From Problem to Valuable Resource Daniela Coppola 1 , Chiara Lauritano 1 , Fortunato Palma Esposito 1, Gennaro Riccio 1 , Carmen Rizzo 1 and Donatella de Pascale 1,2,* 1 Department of Marine Biotechnology, Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy; [email protected] (D.C.); [email protected] (C.L.); [email protected] (F.P.E.); [email protected] (G.R.); [email protected] (C.R.) 2 Institute of Biochemistry and Cell Biology (IBBC), National Research Council, Via Pietro Castellino 111, 80131 Naples, Italy * Correspondence: [email protected]; Tel.: +39-081-5833-319 Abstract: Following the growth of the global population and the subsequent rapid increase in urbanization and industrialization, the fisheries and aquaculture production has seen a massive increase driven mainly by the development of fishing technologies. Accordingly, a remarkable increase in the amount of fish waste has been produced around the world; it has been estimated that about two-thirds of the total amount of fish is discarded as waste, creating huge economic and environmental concerns. For this reason, the disposal and recycling of these wastes has become a key issue to be resolved. With the growing attention of the circular economy, the exploitation of underused or discarded marine material can represent a sustainable strategy for the realization of a circular bioeconomy, with the production of materials with high added value. In this study, we underline the enormous role that fish waste can have in the socio-economic sector. This review presents the different compounds with high commercial value obtained by fish byproducts, including collagen, enzymes, and bioactive peptides, and lists their possible applications in different fields. -
December 20, 2007
BEFORE THE SECRETARY OF COMMERCE PETITION TO LIST THE RIBBON SEAL (HISTRIOPHOCA FASCIATA) AS A THREATENED OR ENDANGERED SPECIES UNDER THE ENDANGERED SPECIES ACT © G. CARLETON RAY CENTER FOR BIOLOGICAL DIVERSITY DECEMBER 20, 2007 Notice of Petition____________________________________________________ Carlos M. Gutierrez Secretary of Commerce U.S. Department of Commerce 1401 Constitution Avenue, N.W., Room 5516 Washington, D.C. 20230 Dr. William Hogarth Assistant Administrator for Fisheries National Oceanographic and Atmospheric Administration 1315 East-West Highway Silver Springs, MD 20910 PETITIONER The Center for Biological Diversity 1095 Market Street, Suite 511 San Francisco, CA 94103 ph: (415) 436-9682 ext 301 fax: (415) 436-9683 __________________________ Date: this 20th day of December, 2007 Shaye Wolf, Ph.D. Martha Palomino Tovar, Ph.D. Candidate Brendan Cummings Center for Biological Diversity Pursuant to Section 4(b) of the Endangered Species Act (“ESA”), 16 U.S.C. §1533(b), Section 553(3) of the Administrative Procedures Act, 5 U.S.C. § 553(e), and 50 C.F.R. §424.14(a), the Center for Biological Diversity (“Petitioner”) hereby petitions the Secretary of Commerce, through the National Marine Fisheries Service (“NMFS”), to list the ribbon seal (Histriophoca fasciata) as a threatened or endangered species and to designate critical habitat to ensure its survival and recovery. The Center for Biological Diversity (“Center”) is a non-profit, public interest environmental organization dedicated to the protection of native species and their habitats through science, policy, and environmental law. The Center has over 40,000 members in Alaska and throughout the United States. The Center and its members are concerned with the conservation of endangered species, including the ribbon seal, and the effective implementation of the ESA. -
Radioactivity in the Arctic Seas
IAEA-TECDOC-1075 XA9949696 Radioactivity in the Arctic Seas Report for the International Arctic Seas Assessment Project (IASAP) ffl INTERNATIONAL ATOMIC ENERGY AGENCA / Y / 1JrrziZr^AA 30-16 The originating Section of this publication in the IAEA was: Radiometrics Section International Atomic Energy Agency Marine Environment Laboratory B.P. 800 MC 98012 Monaco Cedex RADIOACTIVITY IN THE ARCTIC SEAS IAEA, VIENNA, 1999 IAEA-TECDOC-1075 ISSN 1011-4289 ©IAEA, 1999 Printe IAEe th AustriAn y i d b a April 1999 FOREWORD From 199 o 1993t e Internationa6th l Atomic Energy Agency's Marine Environment Laboratory (IAEA-MEL s engage IAEA'e wa ) th n di s International Arctic Seas Assessment Project (IASAP whicn i ) h emphasi bees ha sn place criticaa n do l revie f environmentawo l conditions in the Arctic Seas. IAEA-MEe Th L programme, organize framewore th n dIASAi e th f ko P included: (i) an oceanographic and an ecological description of the Arctic Seas; provisioe th (ii )centra a f no l database facilitIASAe th r yfo P programm collectione th r efo , synthesi interpretatiod san datf nmarino n ao e radioactivit Arctie th n yi c Seas; (iii) participation in official expeditions to the Kara Sea organized by the joint Russian- Norwegian Experts Group (1992, 1993 and 1994), the Russian Academy of Sciences (1994), and the Naval Research Laboratory and Norwegian Defence Research Establishment (1995); (iv) assistance wit d n laboratorsiti han u y based radiometric measurement f curreno s t radionuclide concentrations in the Kara Sea; (v) organization of analytical quality assurance intercalibration exercises among the participating laboratories; (vi) computer modellin e potentiath f o g l dispersa f radionuclideo l s released froe mth dumped f assessmeno wast d associatee ean th f o t d radiological consequencee th f o s disposals on local, regional and global scales; (vii) in situ and laboratory based assessment of distribution coefficients (Kd) and concentration factor sArctie (CFth r c)fo environment. -
Cardiophysiological Responses of the Air-Breathing Alaska Blackfish to Cold Acclimation and Chronic Hypoxic Submergence at 5°C Jonathan A
© 2020. Published by The Company of Biologists Ltd | Journal of Experimental Biology (2020) 223, jeb225730. doi:10.1242/jeb.225730 RESEARCH ARTICLE Cardiophysiological responses of the air-breathing Alaska blackfish to cold acclimation and chronic hypoxic submergence at 5°C Jonathan A. W. Stecyk1,‡, Christine S. Couturier1,*, Denis V. Abramochkin2,3,4,*, Diarmid Hall1, Asia Arrant-Howell1, Kerry L. Kubly1, Shyanne Lockmann1, Kyle Logue1, Lenett Trueblood1, Connor Swalling1, Jessica Pinard1 and Angela Vogt1 ABSTRACT 2016). Consequently, in winter, cardiac physiology must be The Alaska blackfish (Dallia pectoralis) remains active at cold adjusted to accommodate the cold temperature-driven effects on temperatures when experiencing aquatic hypoxia without air access. contractility, blood viscosity and associated vascular resistance to To discern the cardiophysiological adjustments that permit this ensure the efficient transport of respiratory gases, nutrients, waste behaviour, we quantified the effect of acclimation from 15°C to 5°C in products and signalling molecules of the endocrine system among normoxia (15N and 5N fish), as well as chronic hypoxic submergence tissues via the circulatory system (Young and Egginton, 2011). In (6–8 weeks; ∼6.3–8.4 kPa; no air access) at 5°C (5H fish), on in vivo addition, in winter, cardiac electrical excitability must be adjusted to coincide with temperature-dependent reductions in heart rate ( fH), and spontaneous heart rate ( fH), electrocardiogram, ventricular action potential (AP) shape and duration (APD), the background inward while maintaining cardiac excitability and protecting against cardiac + arrhythmias that can be induced by cold temperature and oxygen rectifier (IK1) and rapid delayed rectifier (IKr)K currents and ventricular gene expression of proteins involved in excitation–contraction deprivation (Vornanen, 2017). -
Alaska Arctic Marine Fish Ecology Catalog
Prepared in cooperation with Bureau of Ocean Energy Management, Environmental Studies Program (OCS Study, BOEM 2016-048) Alaska Arctic Marine Fish Ecology Catalog Scientific Investigations Report 2016–5038 U.S. Department of the Interior U.S. Geological Survey Cover: Photographs of various fish studied for this report. Background photograph shows Arctic icebergs and ice floes. Photograph from iStock™, dated March 23, 2011. Alaska Arctic Marine Fish Ecology Catalog By Lyman K. Thorsteinson and Milton S. Love, editors Prepared in cooperation with Bureau of Ocean Energy Management, Environmental Studies Program (OCS Study, BOEM 2016-048) Scientific Investigations Report 2016–5038 U.S. Department of the Interior U.S. Geological Survey U.S. Department of the Interior SALLY JEWELL, Secretary U.S. Geological Survey Suzette M. Kimball, Director U.S. Geological Survey, Reston, Virginia: 2016 For more information on the USGS—the Federal source for science about the Earth, its natural and living resources, natural hazards, and the environment—visit http://www.usgs.gov or call 1–888–ASK–USGS. For an overview of USGS information products, including maps, imagery, and publications, visit http://store.usgs.gov. Disclaimer: This Scientific Investigations Report has been technically reviewed and approved for publication by the Bureau of Ocean Energy Management. The information is provided on the condition that neither the U.S. Geological Survey nor the U.S. Government may be held liable for any damages resulting from the authorized or unauthorized use of this information. The views and conclusions contained in this document are those of the authors and should not be interpreted as representing the opinions or policies of the U.S. -
Creating Sense from Non-Sense Dna: De Novo Genesis and Evolutionary History of Antifreeze Glycoprotein Gene in Northern Cod Fishes (Gadidae)
CREATING SENSE FROM NON-SENSE DNA: DE NOVO GENESIS AND EVOLUTIONARY HISTORY OF ANTIFREEZE GLYCOPROTEIN GENE IN NORTHERN COD FISHES (GADIDAE) BY XUAN ZHUANG DISSERTATION Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology with a concentration in Ecology, Ethology, and Evolution in the Graduate College of the University of Illinois at Urbana-Champaign, 2013 Urbana, Illinois Doctoral Committee: Professor Chi-Hing Christina Cheng, Chair, Director of Research Professor Arthur L. DeVries Professor Gary J. Olsen Associate Professor Kurt E. Kwast ABSTRACT Gadids (cod fishes) are ecologically prominent and important species of the north polar marine fauna. Seven gadid species are known to have evolved antifreeze glycoproteins (AFGPs) that enable their survival from inoculative freezing by environmental ice in frigid Arctic and sub- Arctic waters. AFGPs protect the fish from freezing death by binding to ice crystals and arresting ice growth within the fish. How and from where this important new genetic trait evolved in the gadid genome remained unknown, as thus far there are no homologous sequences in databases to infer genetic ancestry based on sequence homology. Additionally, the seven AFGP-bearing species are dispersed in separate clades of the gadid phylogeny, indicating a complicated evolutionary history of AFGP in the gadid lineage. The AFGP loci in three gadid species were isolated and characterized to investigate the genetic origin and evolutionary pathway of the AFGP gene family in the gadid lineage. Two of these species are polar cod Boreogadus saida and Atlantic tomcod Microgadus tomcod, which occur in distinct clades representing two possible separate origins of the gadid AFGP. -
1 CWU Comparative Osteology Collection, List of Specimens
CWU Comparative Osteology Collection, List of Specimens List updated November 2019 0-CWU-Collection-List.docx Specimens collected primarily from North American mid-continent and coastal Alaska for zooarchaeological research and teaching purposes. Curated at the Zooarchaeology Laboratory, Department of Anthropology, Central Washington University, under the direction of Dr. Pat Lubinski, [email protected]. Facility is located in Dean Hall Room 222 at CWU’s campus in Ellensburg, Washington. Numbers on right margin provide a count of complete or near-complete specimens in the collection. Specimens on loan from other institutions are not listed. There may also be a listing of mount (commercially mounted articulated skeletons), part (partial skeletons), skull (skulls), or * (in freezer but not yet processed). Vertebrate specimens in taxonomic order, then invertebrates. Taxonomy follows the Integrated Taxonomic Information System online (www.itis.gov) as of June 2016 unless otherwise noted. VERTEBRATES: Phylum Chordata, Class Petromyzontida (lampreys) Order Petromyzontiformes Family Petromyzontidae: Pacific lamprey ............................................................. Entosphenus tridentatus.................................... 1 Phylum Chordata, Class Chondrichthyes (cartilaginous fishes) unidentified shark teeth ........................................................ ........................................................................... 3 Order Squaliformes Family Squalidae Spiny dogfish ........................................................ -
399 4. Bibliography
click for previous page 399 4. BIBLIOGRAPHY Alcock, A., 1889. Natural history notes from H.M. Indian Marine Survey Steamer “Investigator”, Commander Alfred Carpenter, R.N., D.S.O., commanding No. 13. On the bathybial fishes of the Bay of Bengal and neighboring waters, obtained during the seasons 1885-1889. Ann.Mag.Nat.Hist., ser. 6,6(23):376-399 .................., 1891. On the deep-sea fishes collected by the “Investigator” in 1890-1891. Ann.Mag.Nat.Hist., ser. 6,8:16-34; 119-138, pls vii-viii .................., 1899. A descriptive catalogue of the Indian deep-sea fishes in the Indian Museum. Being a revised account of the deep-sea fishes collected by the Royal Indian Marine Survey ship Investigator. Calcutta, Indian Museum, 211 pp. Allen, M.J. & G.8. Smith, 1988. Atlas and zoogeography of common fishes in the Bering Sea and Northeastern Pacific. NOAA Tech.Rep. NMFS, 66: 151 pp. Altukhov, K.A., 1979. O razmnozheznii i razvitii saiki Boreogadus saida (Lepechin) v Belom More. (The reproduction and development of the Arctic cod, Boreogadus saida, in the White Sea.) Vopr.lkhtiol.. 19(5):874-82 (J.Ichthyol., 19(5):93-101) Amaoka, K. et al. (eds), 1983. Fishes from the north-eastern Sea of Japan and the Okhotsk Sea off Hokkaido. Japan Fisheries Resource Conservation Association. Tokyo. 371 pp. Andriashev, A.P., 1954. Fishes of the northern seas of the USSR. Keys to the fauna of the USSR. Zool.lnst.USSR Acad.Sci., 53. Moscow-Leningrad, 617 p. (Transl. for Smithsonian Inst. and Nat.Sci.Found., by Israel Program for Sci.Transl., 1964) ...................., 1965. -
BOEM 2017-066 Genomics of Arctic
OCS Study BOEM 2017 -066 Genomics of Arctic Cod US Department of the Interior Bureau of Ocean Energy Management Alaska OCS Region OCS Study BOEM 2017-066 Genomics of Arctic Cod 30 September 2017 Authors Robert E. Wilson, George K. Sage, Sarah A. Sonsthagen, Meg C. Gravley, Damian M. Menning and Sandra L. Talbot Prepared under BOEM Award M14PG00008 By U. S. Geological Survey, Alaska Science Center 4210 University Drive Anchorage, AK 99508 USA US Department of the Interior Bureau of Ocean Energy Management Alaska OCS Region DISCLAIMER This study was funded, in part, by the US Department of the Interior, Bureau of Ocean Energy Management (BOEM), Environmental Studies Program, Washington, DC, through Agreement Number M14PG00008 with the U.S. Geological Survey (USGS). The findings and conclusions in this article are those of the authors and do not necessarily represent the views of the Bureau of Oceans Energy and Management. REPORT AVAILABILITY To download a PDF file of this report, go to the U.S. Department of the Interior, Bureau of Ocean Energy Management Data and Information Systems webpage (https://marinecadastre.gov/espis/#) and search on 2017-066. CITATION Wilson, R.E, G.K. Sage, S.A. Sonsthagen, M.C. Gravley, D.M. Menning, and S.L. Talbot. 2017. Genomics of Arctic Cod. Anchorage, AK: US Dept. of the Interior, Bureau of Ocean Energy Management, Alaska OCS Region. OCS Study BOEM 2017-066. 92pp. ACKNOWLEDGEMENTS We thank the numerous staff at U.S. Geological Survey for providing samples and for laboratory and graphical assistance. The BOEM Alaska OCS Region contributed to this document. -
Kawamura, A. a Review of Food of Balaenopterid Whales. 155-197
A REVIEW OF FOOD OF BALAENOPTERID WHALES AKITO KAWAMURA Faculty of Fisheries, Hokkaido University, Hakodate, Hokkaido ABSTRACT In order to elucidate what species among so many kind of marine organ isms are likely to be consumed largely by the balaenopterid whales, the ex isting evidence on the food habits of baleen whales is reviewed. To meet with this primary purpose the report was mainly focussed on to describe qualitative aspects of food species having been known to date from the notable whaling grounds over the world rather than documenting quantitative subjects.' One of interesting facts noticed throughout the contribution was that there exists fairly intense diversity in the assembly of food species composition by regions such as; northern hemisphere vs. southern hemisphere, Pacific region vs. Atlantic region, inshore waters vs. offshore waters, embayed waters vs. open waters, where the former usually shows more div'ersed complexity than the latter. The fact however suggests that although the composition of food spe cies locally varies over the various whaling grounds, the food organisms as taxonomical groups are very similar one another even in locally isolated whal ing grounds when the food organisms and their assemblies are considered by the family or genus basis. In this connection many evidences given in the text may suggest that the balaenopterid whales as a whole may substantially live on quite simply compositioned forage assembly in comparison with tre mendous variety of organisms existing in the marine ecosystems. One of im portant aspects of the baleen whales food must be found in their characteris tics of forming dense swarms, schools, and/or aggregations in the shallower enough layers to be fed by the whales. -
Effect of Temperature and Tissue Type on Fatty Acid Signatures of Two Species of North Pacific Juvenile Gadids: a Laboratory Feeding Study
Journal of Experimental Marine Biology and Ecology 448 (2013) 188–196 Contents lists available at ScienceDirect Journal of Experimental Marine Biology and Ecology journal homepage: www.elsevier.com/locate/jembe Effect of temperature and tissue type on fatty acid signatures of two species of North Pacific juvenile gadids: A laboratory feeding study Louise A. Copeman a,b,⁎,BenjaminJ.Laurelc,1, Christopher C. Parrish b,2 a Cooperative Institute for Marine Resources Studies, Oregon State University, Hatfield Marine Science Center, 2030 S. Marine Science Dr., Newport, OR 97365, USA b Department of Ocean Sciences, Memorial University, NL, A1C 5S7, Canada c Fisheries Behavioral Ecology Program, Alaska Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2030 S. Marine Science Dr., Newport, OR 97365, USA article info abstract Article history: The utility of the fatty acid biomarker (FAB) approach in fisheries ecology is limited by our understanding of how Received 7 November 2012 biotic and abiotic factors determine dietary markers in fish tissues. An 8-week laboratory experiment was Received in revised form 9 May 2013 conducted on two species of juvenile gadids (Pacificcod,Gadus macrocephalus and walleye Pollock, Theragra Accepted 11 July 2013 chalcogramma) reared at 3 °C or 9 °C and fed a diet enriched with either oils of marine origin or terrestrial Available online 7 August 201 plant origin. Non-linear models were fitted to investigate how tissue type and temperature mediated the propor- tion of FABs in fish. Across temperatures, fatty acid (FA) profiles were similar for both species of gadids. FAs also Keywords: fi Biomarker showed high temporal sensitivity across temperatures, and were evident in sh after only one week of feeding.