Identification of Vertebra-Like Elements and Their Possible Differentiation from Sclerotomes in the Hagfish
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The Phylum Vertebrata: a Case for Zoological Recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4
Irie et al. Zoological Letters (2018) 4:32 https://doi.org/10.1186/s40851-018-0114-y REVIEW Open Access The phylum Vertebrata: a case for zoological recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4 Abstract The group Vertebrata is currently placed as a subphylum in the phylum Chordata, together with two other subphyla, Cephalochordata (lancelets) and Urochordata (ascidians). The past three decades, have seen extraordinary advances in zoological taxonomy and the time is now ripe for reassessing whether the subphylum position is truly appropriate for vertebrates, particularly in light of recent advances in molecular phylogeny, comparative genomics, and evolutionary developmental biology. Four lines of current research are discussed here. First, molecular phylogeny has demonstrated that Deuterostomia comprises Ambulacraria (Echinodermata and Hemichordata) and Chordata (Cephalochordata, Urochordata, and Vertebrata), each clade being recognized as a mutually comparable phylum. Second, comparative genomic studies show that vertebrates alone have experienced two rounds of whole-genome duplication, which makes the composition of their gene family unique. Third, comparative gene-expression profiling of vertebrate embryos favors an hourglass pattern of development, the most conserved stage of which is recognized as a phylotypic period characterized by the establishment of a body plan definitively associated with a phylum. This mid-embryonic conservation is supported robustly in vertebrates, but only weakly in chordates. Fourth, certain complex patterns of body plan formation (especially of the head, pharynx, and somites) are recognized throughout the vertebrates, but not in any other animal groups. For these reasons, we suggest that it is more appropriate to recognize vertebrates as an independent phylum, not as a subphylum of the phylum Chordata. -
Status of the Fisheries Report an Update Through 2008
STATUS OF THE FISHERIES REPORT AN UPDATE THROUGH 2008 Photo credit: Edgar Roberts. Report to the California Fish and Game Commission as directed by the Marine Life Management Act of 1998 Prepared by California Department of Fish and Game Marine Region August 2010 Acknowledgements Many of the fishery reviews in this report are updates of the reviews contained in California’s Living Marine Resources: A Status Report published in 2001. California’s Living Marine Resources provides a complete review of California’s three major marine ecosystems (nearshore, offshore, and bays and estuaries) and all the important plants and marine animals that dwell there. This report, along with the Updates for 2003 and 2006, is available on the Department’s website. All the reviews in this report were contributed by California Department of Fish and Game biologists unless another affiliation is indicated. Author’s names and email addresses are provided with each review. The Editor would like to thank the contributors for their efforts. All the contributors endeavored to make their reviews as accurate and up-to-date as possible. Additionally, thanks go to the photographers whose photos are included in this report. Editor Traci Larinto Senior Marine Biologist Specialist California Department of Fish and Game [email protected] Status of the Fisheries Report 2008 ii Table of Contents 1 Coonstripe Shrimp, Pandalus danae .................................................................1-1 2 Kellet’s Whelk, Kelletia kelletii ...........................................................................2-1 -
Bibliography
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Vol.14, No.1 GLOBAL OCEAN ECOSYSTEM DYNAMICS APRIL 2008 Contents Editorial 2. IMBER-GLOBEC TTT Dawn Ashby, GLOBEC IPO, Plymouth, UK ([email protected]) 3. Concepts in biological The next few months are going to be a busy time for GLOBEC, with the Coping with oceanography Global Change and Eastern Boundary Upwelling Ecosystems symposia being held 8. Coping with global change in the summer, and the GLOBEC SSC meeting at the IGBP Congress in May. Thank symposium you for all of you who have submitted abstracts to the symposia, we have received 9. SAHFOS page a tremendous response to both events and are very much looking forward to what 10. Natural sciences prize promises to be two very exciting meetings. I am also pleased to announce that 11. GLOBEC Norway dates have been set for the 3rd GLOBEC Open Science meeting, which will be held at the Victoria Conference Centre, British Columbia, Canada on 22-26 June 2009. 14. Marine climate change For those of you who were at the ESSAS symposium, you will remember that this is in Irish waters a superb venue and I hope that many of you will be able to attend. 15. US GLOBEC 18. David Cushing It’s all change again in the GLOBEC IPO, we would like to wish Lotty Dunbar well for 19. Japan-China-Korea GLOBEC her maternity leave. Lotty will be away from the IPO for a year from the beginning of April but will be back with us again in time for the OSM next year. -
There Is No Highly Conserved Embryonic Stage in the Vertebrates: Implications for Current Theories of Evolution and Development
Anat Embryol (1997) 196:91–106 © Springer-Verlag 1997 REVIEW ARTICLE &roles:Michael K. Richardson · James Hanken Mayoni L. Gooneratne · Claude Pieau Albert Raynaud · Lynne Selwood · Glenda M. Wright There is no highly conserved embryonic stage in the vertebrates: implications for current theories of evolution and development &misc:Accepted: 5 April 1997 &p.1:Abstract Embryos of different species of vertebrate tal biology, and especially in the conservation of devel- share a common organisation and often look similar. opmental mechanisms, re-examination of the extent of Adult differences among species become more apparent variation in vertebrate embryos is long overdue. We pres- through divergence at later stages. Some authors have ent here the first review of the external morphology of suggested that members of most or all vertebrate clades tailbud embryos, illustrated with original specimens pass through a virtually identical, conserved stage. This from a wide range of vertebrate groups. We find that em- idea was promoted by Haeckel, and has recently been re- bryos at the tailbud stage – thought to correspond to a vived in the context of claims regarding the universality conserved stage – show variations in form due to allome- of developmental mechanisms. Thus embryonic resem- try, heterochrony, and differences in body plan and blance at the tailbud stage has been linked with a con- somite number. These variations foreshadow important served pattern of developmental gene expression – the differences in adult body form. Contrary to recent claims zootype. Haeckel’s drawings of the external morphology that all vertebrate embryos pass through a stage when of various vertebrates remain the most comprehensive they are the same size, we find a greater than 10-fold comparative data purporting to show a conserved stage. -
Lamprey, Hagfish
Agnatha - Lamprey, Kingdom: Animalia Phylum: Chordata Super Class: Agnatha Hagfish Agnatha are jawless fish. Lampreys and hagfish are in this class. Members of the agnatha class are probably the earliest vertebrates. Scientists have found fossils of agnathan species from the late Cambrian Period that occurred 500 million years ago. Members of this class of fish don't have paired fins or a stomach. Adults and larvae have a notochord. A notochord is a flexible rod-like cord of cells that provides the main support for the body of an organism during its embryonic stage. A notochord is found in all chordates. Most agnathans have a skeleton made of cartilage and seven or more paired gill pockets. They have a light sensitive pineal eye. A pineal eye is a third eye in front of the pineal gland. Fertilization of eggs takes place outside the body. The lamprey looks like an eel, but it has a jawless sucking mouth that it attaches to a fish. It is a parasite and sucks tissue and fluids out of the fish it is attached to. The lamprey's mouth has a ring of cartilage that supports it and rows of horny teeth that it uses to latch on to a fish. Lampreys are found in temperate rivers and coastal seas and can range in size from 5 to 40 inches. Lampreys begin their lives as freshwater larvae. In the larval stage, lamprey usually are found on muddy river and lake bottoms where they filter feed on microorganisms. The larval stage can last as long as seven years! At the end of the larval state, the lamprey changes into an eel- like creature that swims and usually attaches itself to a fish. -
Stages of Embryonic Development of the Zebrafish
DEVELOPMENTAL DYNAMICS 2032553’10 (1995) Stages of Embryonic Development of the Zebrafish CHARLES B. KIMMEL, WILLIAM W. BALLARD, SETH R. KIMMEL, BONNIE ULLMANN, AND THOMAS F. SCHILLING Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254 (C.B.K., S.R.K., B.U., T.F.S.); Department of Biology, Dartmouth College, Hanover, NH 03755 (W.W.B.) ABSTRACT We describe a series of stages for Segmentation Period (10-24 h) 274 development of the embryo of the zebrafish, Danio (Brachydanio) rerio. We define seven broad peri- Pharyngula Period (24-48 h) 285 ods of embryogenesis-the zygote, cleavage, blas- Hatching Period (48-72 h) 298 tula, gastrula, segmentation, pharyngula, and hatching periods. These divisions highlight the Early Larval Period 303 changing spectrum of major developmental pro- Acknowledgments 303 cesses that occur during the first 3 days after fer- tilization, and we review some of what is known Glossary 303 about morphogenesis and other significant events that occur during each of the periods. Stages sub- References 309 divide the periods. Stages are named, not num- INTRODUCTION bered as in most other series, providing for flexi- A staging series is a tool that provides accuracy in bility and continued evolution of the staging series developmental studies. This is because different em- as we learn more about development in this spe- bryos, even together within a single clutch, develop at cies. The stages, and their names, are based on slightly different rates. We have seen asynchrony ap- morphological features, generally readily identi- pearing in the development of zebrafish, Danio fied by examination of the live embryo with the (Brachydanio) rerio, embryos fertilized simultaneously dissecting stereomicroscope. -
Using Information in Taxonomists' Heads to Resolve Hagfish And
This article was downloaded by: [Max Planck Inst fuer Evolutionsbiologie] On: 03 September 2013, At: 07:01 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Historical Biology: An International Journal of Paleobiology Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/ghbi20 Using information in taxonomists’ heads to resolve hagfish and lamprey relationships and recapitulate craniate–vertebrate phylogenetic history Maria Abou Chakra a , Brian Keith Hall b & Johnny Ricky Stone a b c d a Department of Biology , McMaster University , Hamilton , Canada b Department of Biology , Dalhousie University , Halifax , Canada c Origins Institute, McMaster University , Hamilton , Canada d SHARCNet, McMaster University , Hamilton , Canada Published online: 02 Sep 2013. To cite this article: Historical Biology (2013): Using information in taxonomists’ heads to resolve hagfish and lamprey relationships and recapitulate craniate–vertebrate phylogenetic history, Historical Biology: An International Journal of Paleobiology To link to this article: http://dx.doi.org/10.1080/08912963.2013.825792 PLEASE SCROLL DOWN FOR ARTICLE Taylor & Francis makes every effort to ensure the accuracy of all the information (the “Content”) contained in the publications on our platform. However, Taylor & Francis, our agents, and our licensors make no representations or warranties whatsoever as to the accuracy, completeness, or suitability for any purpose of the Content. Any opinions and views expressed in this publication are the opinions and views of the authors, and are not the views of or endorsed by Taylor & Francis. The accuracy of the Content should not be relied upon and should be independently verified with primary sources of information. -
Evolution of Predetermined Germ Cells in Vertebrate Embryos: Implications for Macroevolution
EVOLUTION & DEVELOPMENT 5:4, 414–431 (2003) Evolution of predetermined germ cells in vertebrate embryos: implications for macroevolution Andrew D. Johnson,a,b,* Matthew Drum,b Rosemary F. Bachvarova,c Thomas Masi,b Mary E. White,d and Brian I. Crotherd aDivision of Genetics, University of Nottingham, Queen’s Medical Centre, Nottingham NG7 2UH, UK bDepartment of Biological Science, Florida State University, Tallahassee, FL 32306, USA cDepartment of Cell and Developmental Biology, Weill Medical College of Cornell University, 1300 York Avenue, New York, NY 10021, USA dDepartment of Biological Science, Southeastern Louisiana University, Hammond, LA 70402, USA *Author for correspondence (e-mail: [email protected]) SUMMARY The germ line is established in animal embryos To determine which mechanism is ancestral to the tetrapod with the formation of primordial germ cells (PGCs), which give lineage and to understand the pattern of inheritance in higher rise to gametes. Therefore, the need to form PGCs can act as vertebrates, we used a phylogenetic approach to analyze a developmental constraint by inhibiting the evolution of basic morphological processes in both groups and correlated embryonic patterning mechanisms that compromise their these with mechanisms of germ cell determination. Our results development. Conversely, events that stabilize the PGCs indicate that regulative germ cell determination is a property of may liberate these constraints. Two modes of germ cell embryos retaining ancestral embryological processes, determination exist in animal embryos: (a) either PGCs are whereas predetermined germ cells are found in embryos predetermined by the inheritance of germ cell determinants with derived morphological traits. These correlations (germ plasm) or (b) PGCs are formed by inducing signals suggest that regulative germ cell formation is an important secreted by embryonic tissues (i.e., regulative determination). -
Respiratory Physiology of Neomyxine Biniplicata, the Slender Hagfish
Respiratory Physiology of Neomyxine biniplicata, the Slender Hagfish A thesis submitted in partial fulfilment of the requirements for the Degree of Master of Science in Biological Sciences University of Canterbury By Catherine Philippa Edwards University of Canterbury, New Zealand 2019 Table of Contents List of Figures ..................................................................................................................... ix List of Tables ..................................................................................................................... xii Abstract............................................................................................................................. xiii Acknowledgements ......................................................................................................... xv Chapter One Introduction ..................................................................................................... 1 1.1 Family Myxinidae ......................................................................................................... 1 1.2 The Palaeozoic Era ........................................................................................................ 2 1.3 The Ostracoderms ......................................................................................................... 3 1.4 Early vertebrate evolution and relationships ........................................................... 3 1.5 Sub-families of Myxinidae .......................................................................................... -
Evolutionary Crossroads in Developmental Biology: Cyclostomes (Lamprey and Hagfish) Sebastian M
PRIMER SERIES PRIMER 2091 Development 139, 2091-2099 (2012) doi:10.1242/dev.074716 © 2012. Published by The Company of Biologists Ltd Evolutionary crossroads in developmental biology: cyclostomes (lamprey and hagfish) Sebastian M. Shimeld1,* and Phillip C. J. Donoghue2 Summary and is appealing because it implies a gradual assembly of vertebrate Lampreys and hagfish, which together are known as the characters, and supports the hagfish and lampreys as experimental cyclostomes or ‘agnathans’, are the only surviving lineages of models for distinct craniate and vertebrate evolutionary grades (i.e. jawless fish. They diverged early in vertebrate evolution, perceived ‘stages’ in evolution). However, only comparative before the origin of the hinged jaws that are characteristic of morphology provides support for this phylogenetic hypothesis. The gnathostome (jawed) vertebrates and before the evolution of competing hypothesis, which unites lampreys and hagfish as sister paired appendages. However, they do share numerous taxa in the clade Cyclostomata, thus equally related to characteristics with jawed vertebrates. Studies of cyclostome gnathostomes, has enjoyed unequivocal support from phylogenetic development can thus help us to understand when, and how, analyses of protein-coding sequence data (e.g. Delarbre et al., 2002; key aspects of the vertebrate body evolved. Here, we Furlong and Holland, 2002; Kuraku et al., 1999). Support for summarise the development of cyclostomes, highlighting the cyclostome theory is now overwhelming, with the recognition of key species studied and experimental methods available. We novel families of non-coding microRNAs that are shared then discuss how studies of cyclostomes have provided exclusively by hagfish and lampreys (Heimberg et al., 2010). -
The Body Plan Concept and Its Centrality in Evo-Devo
Evo Edu Outreach (2012) 5:219–230 DOI 10.1007/s12052-012-0424-z EVO-DEVO The Body Plan Concept and Its Centrality in Evo-Devo Katherine E. Willmore Published online: 14 June 2012 # Springer Science+Business Media, LLC 2012 Abstract A body plan is a suite of characters shared by a by Joseph Henry Woodger in 1945, and means ground plan group of phylogenetically related animals at some point or structural plan (Hall 1999; Rieppel 2006; Woodger 1945). during their development. The concept of bauplane, or body Essentially, a body plan is a suite of characters shared by a plans, has played and continues to play a central role in the group of phylogenetically related animals at some point study of evolutionary developmental biology (evo-devo). during their development. However, long before the term Despite the importance of the body plan concept in evo- body plan was coined, its importance was demonstrated in devo, many researchers may not be familiar with the pro- research programs that presaged the field of evo-devo, per- gression of ideas that have led to our current understanding haps most famously (though erroneously) by Ernst Haeck- of body plans, and/or current research on the origin and el’s recapitulation theory. Since the rise of evo-devo as an maintenance of body plans. This lack of familiarity, as well independent field of study, the body plan concept has as former ties between the body plan concept and metaphys- formed the backbone upon which much of the current re- ical ideology is likely responsible for our underappreciation search is anchored.