Diagnostic Tests for Crimean-Congo Haemorrhagic Fever: a Widespread Tickborne Disease

Total Page:16

File Type:pdf, Size:1020Kb

Diagnostic Tests for Crimean-Congo Haemorrhagic Fever: a Widespread Tickborne Disease Analysis BMJ Glob Health: first published as 10.1136/bmjgh-2018-001114 on 20 February 2019. Downloaded from Diagnostic tests for Crimean-Congo haemorrhagic fever: a widespread tickborne disease Laura T Mazzola, Cassandra Kelly-Cirino To cite: Mazzola LT, ABSTRACT Summary box Kelly-Cirino C. Diagnostic Crimean-Congo haemorrhagic fever (CCHF) is a tests for Crimean-Congo widespread tickborne disease that circulates in wild and ► Diagnostic tests for Crimean-Congo haemorrhagic haemorrhagic fever: a domestic animal hosts, and causes severe and often fatal widespread tickborne fever virus (CCHFV), a WHO R&D Blueprint priority haemorrhagic fever in infected humans. Due to the lack disease. BMJ Glob Health pathogen, include commercial reverse transcriptase 2019;4:e001114. doi:10.1136/ of treatment options or vaccines, and a high fatality rate, PCR and serological diagnostic assays and multiplex bmjgh-2018-001114 CCHF virus (CCHFV) is considered a high-priority pathogen panels to distinguish from other viral haemorrhagic according to the WHO R&D Blueprint. Several commercial fever agents. reverse transcriptase PCR (RT-PCR) and serological Handling editor Seye Abimbola ► Despite the extensive range of tests available, diag- diagnostic assays for CCHFV are already available, nostic gaps remain, including a need for improved ► Additional material is including febrile agent panels to distinguish CCHFV from surveillance for early detection, a lack of point-of- published online only. To view other viral haemorrhagic fever agents; however, the please visit the journal online care testing options and issues with limited avail- majority of international laboratories use inhouse assays. (http:// dx. doi. org/ 10. 1136/ ability of clinical specimens for test validation. As CCHFV has numerous amplifying animal hosts, a cross- bmjgh- 2018- 001114). ► Refinement of target product profiles for CCHFV sectoral ‘One Health’ approach to outbreak prevention diagnostics to include these needs will help to en- is recommended to enhance notifications and enable hance surveillance, prevention and management of Received 14 August 2018 early warning for genetic and epidemiological shifts in CCHFV in both human and animal hosts. Revised 17 October 2018 the human, animal and tick populations. However, a lack Accepted 23 October 2018 of guidance for surveillance in animals, harmonisation of case identification and validated serodiagnostic kits for on human diagnostics for screening, diag- animal testing hinders efforts to strengthen surveillance nosis and surveillance. systems. Additionally, as RT-PCR tests tend to be lineage- specific for regional circulating strains, there is a need for History and epidemiology of CCHF http://gh.bmj.com/ pan-lineage sensitive diagnostics. Adaptation of existing CCHF virus (CCHFV) is an orthonairovirus tests to point-of-care molecular diagnostic platforms that of the family Nairoviridae causing severe and can be implemented in clinic or field-based settings would be of value given the potential for CCHFV outbreaks in often fatal haemorrhagic fever in humans. remote or low-resource areas. Finally, improved access to The disease was first described in the Crimea clinical specimens for validation of diagnostics would help in 1944 and became known as ‘Crimean haem- orrhagic fever’, but the virus was first isolated to accelerate development of new tests. These gaps should on September 24, 2021 by guest. Protected copyright. be addressed by updated target product profiles for CCHFV in Congo in 1956 and was named ‘Congo diagnostics. virus’; the two names converged as CCHF in 1969.2 4 5 CCHF is considered an ‘emerging’ disease across the globe, with many coun- tries reporting new infections in recent INTRODUCTION decades.6–8 CCHF is now found in Europe, Crimean-Congo haemorrhagic fever (CCHF) the Mediterranean, China and Central Asia, is one of the high-priority pathogens identi- Africa, the Middle East and India (figure 1), © Author(s) (or their fied on the WHO R&D Blueprint because of employer(s)) 2019. Re-use and has been reported after long periods of 9 10 permitted under CC BY. its high case fatality rate, potential for noso- absence. Cases are typically sporadic and Published by BMJ. comial outbreaks and difficulties in treatment seasonal, and occur in remote or agricultural 1–3 Emerging Threats Programme, and prevention. CCHF is widespread, now regions. Foundation for Innovative New found in Europe, Asia, Africa, the Middle East Diagnostics (FIND), Geneva, and the Indian subcontinent, with currently CCHF reservoir and mode of transmission Switzerland no vaccine available for widespread human Ixodid (hard) ticks are a reservoir and a vector Correspondence to or animal use. This landscape analysis is for CCHFV, now commonly found in dry or Dr Cassandra Kelly-Cirino; intended to provide a view to the current state semiarid environments across Africa, Europe, cassandra. kelly@ finddx. org of CCHF diagnostics, with particular emphasis the Middle East and Asia.7 11 12 Numerous Mazzola LT, Kelly-Cirino C. BMJ Glob Health 2019;4:e001114. doi:10.1136/bmjgh-2018-001114 1 BMJ Global Health BMJ Glob Health: first published as 10.1136/bmjgh-2018-001114 on 20 February 2019. Downloaded from Figure 1 Geographical distribution of Crimean-Congo haemorrhagic fever (CCHF) (http://www.who.int/emergencies/diseases/ crimean-congo-haemorrhagic-fever/en/). wild and domestic animals, including cattle, goats, sheep, seroprevalence have been detected in specific regions of 18 19 camels and hares, serve as amplifying hosts after being Turkey and Greece. http://gh.bmj.com/ bitten by infected ticks, but animal infections are difficult The haemorrhagic phase is generally 2 weeks in dura- to detect as the tick–animal–tick cycle is asymptomatic.13 tion with rapid progressive haemorrhage. Severely ill CCHFV persists throughout the tick life-cycle, enabling patients may experience rapid deterioration, shock and reservoirs of infection over long periods without verte- multiorgan failure.20 In documented outbreaks, fatality brate hosts. rates in hospitalised patients have ranged as high as Transmission to humans occurs most frequently among 50%, with an average mortality of 30% occurring in the on September 24, 2021 by guest. Protected copyright. 1 2 agricultural workers following the bite of an infected tick, second week of illness. For survivors, recovery generally and among slaughterhouse or veterinary workers exposed begins 10–20 days after the onset of illness; however, full 11 16 to the blood and tissue of infected livestock. Human-to- recovery may take up to a year. The long-term effects human transmission is infrequent, but has arisen from of CCHFV infection have not been studied well enough contact with infected patients or contaminated medical in survivors to determine whether or not specific compli- equipment.14–17 cations exist. Molecular epidemiology Clinical presentation CCHFV displays a high degree of sequence diversity, CCHFV infection typically has four distinct phases— with divergence of 20%, 31% and 22% for the S, M incubation, prehaemorrhagic, haemorrhagic and conva- and L segments among isolates in GenBank. Based on lescence. The incubation period is in the range of 1–5 an analysis of the viral S segment, six or seven viral line- days following a tick bite, and 5–7 days following contact ages/clades have been identified,6 11 16 21 22 suggesting a 4 11 16 with infected blood or tissues. The prehaemorrhagic lengthy history of geographical dispersion of the virus phase is characterised by the sudden onset of a wide range from Africa to Europe, the Middle East and then Asia. of non-specific symptoms that mimic other diseases and Genome diversity can be greater in the tick than in the lasts for 4–5 days. CCHFV infections may be subclinical or mammalian host.23–25 The extensive sequence diversity of asymptomatic in some people; for example, high levels of CCHFV is likely due to genetic reassortment, enhanced by 2 Mazzola LT, Kelly-Cirino C. BMJ Glob Health 2019;4:e001114. doi:10.1136/bmjgh-2018-001114 BMJ Global Health BMJ Glob Health: first published as 10.1136/bmjgh-2018-001114 on 20 February 2019. Downloaded from circulation and adaptation of strains into new geograph- tick feeding.8 46 Infection control of CCHFV in wildlife ical regions.22 26–29 populations will remain a challenge, however. Currently there are no vaccines available for use in animals,1 2 Therapeutic efforts although the MVA GP vaccine is currently being evalu- Treatment for confirmed cases of CCHF is general ated in sheep.52 supportive care with management of symptoms.2 There is no approved antiviral treatment. Although the anti- viral drug ribavirin is widely used based on its in vitro activity, clinical evidence is inconclusive.30–36 Postex- CCHF DIAGNOSTICS posure prophylaxis using ribavirin is controversial but Laboratory tests used to diagnose CCHF include reverse recommended as a safe option for healthcare providers transcriptase (RT)-PCR, immunofluorescence assay with high-risk/direct exposure to CCHF-infected patient (IFA), antibody (IgG, IgM) and antigen-capture ELISA, fluids or tissue.15 17 37 38 and virus isolation. Patients suspected of CCHF are Development of new therapies has been slow in part primarily diagnosed by RT-PCR as these assays provide due to the requirement for a high-containment labora- the highest detection sensitivity to active infection at tory and the lack of a suitable animal model.6 39 40 Favip- the earliest time point. Lineage detection may
Recommended publications
  • Crimean-Congo Hemorrhagic Fever
    Crimean-Congo Importance Crimean-Congo hemorrhagic fever (CCHF) is caused by a zoonotic virus that Hemorrhagic seems to be carried asymptomatically in animals but can be a serious threat to humans. This disease typically begins as a nonspecific flu-like illness, but some cases Fever progress to a severe, life-threatening hemorrhagic syndrome. Intensive supportive care is required in serious cases, and the value of antiviral agents such as ribavirin is Congo Fever, still unclear. Crimean-Congo hemorrhagic fever virus (CCHFV) is widely distributed Central Asian Hemorrhagic Fever, in the Eastern Hemisphere. However, it can circulate for years without being Uzbekistan hemorrhagic fever recognized, as subclinical infections and mild cases seem to be relatively common, and sporadic severe cases can be misdiagnosed as hemorrhagic illnesses caused by Hungribta (blood taking), other organisms. In recent years, the presence of CCHFV has been recognized in a Khunymuny (nose bleeding), number of countries for the first time. Karakhalak (black death) Etiology Crimean-Congo hemorrhagic fever is caused by Crimean-Congo hemorrhagic Last Updated: March 2019 fever virus (CCHFV), a member of the genus Orthonairovirus in the family Nairoviridae and order Bunyavirales. CCHFV belongs to the CCHF serogroup, which also includes viruses such as Tofla virus and Hazara virus. Six or seven major genetic clades of CCHFV have been recognized. Some strains, such as the AP92 strain in Greece and related viruses in Turkey, might be less virulent than others. Species Affected CCHFV has been isolated from domesticated and wild mammals including cattle, sheep, goats, water buffalo, hares (e.g., the European hare, Lepus europaeus), African hedgehogs (Erinaceus albiventris) and multimammate mice (Mastomys spp.).
    [Show full text]
  • Taxonomy of the Order Bunyavirales: Update 2019
    Archives of Virology (2019) 164:1949–1965 https://doi.org/10.1007/s00705-019-04253-6 VIROLOGY DIVISION NEWS Taxonomy of the order Bunyavirales: update 2019 Abulikemu Abudurexiti1 · Scott Adkins2 · Daniela Alioto3 · Sergey V. Alkhovsky4 · Tatjana Avšič‑Županc5 · Matthew J. Ballinger6 · Dennis A. Bente7 · Martin Beer8 · Éric Bergeron9 · Carol D. Blair10 · Thomas Briese11 · Michael J. Buchmeier12 · Felicity J. Burt13 · Charles H. Calisher10 · Chénchén Cháng14 · Rémi N. Charrel15 · Il Ryong Choi16 · J. Christopher S. Clegg17 · Juan Carlos de la Torre18 · Xavier de Lamballerie15 · Fēi Dèng19 · Francesco Di Serio20 · Michele Digiaro21 · Michael A. Drebot22 · Xiaˇoméi Duàn14 · Hideki Ebihara23 · Toufc Elbeaino21 · Koray Ergünay24 · Charles F. Fulhorst7 · Aura R. Garrison25 · George Fú Gāo26 · Jean‑Paul J. Gonzalez27 · Martin H. Groschup28 · Stephan Günther29 · Anne‑Lise Haenni30 · Roy A. Hall31 · Jussi Hepojoki32,33 · Roger Hewson34 · Zhìhóng Hú19 · Holly R. Hughes35 · Miranda Gilda Jonson36 · Sandra Junglen37,38 · Boris Klempa39 · Jonas Klingström40 · Chūn Kòu14 · Lies Laenen41,42 · Amy J. Lambert35 · Stanley A. Langevin43 · Dan Liu44 · Igor S. Lukashevich45 · Tāo Luò1 · Chuánwèi Lüˇ 19 · Piet Maes41 · William Marciel de Souza46 · Marco Marklewitz37,38 · Giovanni P. Martelli47 · Keita Matsuno48,49 · Nicole Mielke‑Ehret50 · Maria Minutolo3 · Ali Mirazimi51 · Abulimiti Moming14 · Hans‑Peter Mühlbach50 · Rayapati Naidu52 · Beatriz Navarro20 · Márcio Roberto Teixeira Nunes53 · Gustavo Palacios25 · Anna Papa54 · Alex Pauvolid‑Corrêa55 · Janusz T. Pawęska56,57 · Jié Qiáo19 · Sheli R. Radoshitzky25 · Renato O. Resende58 · Víctor Romanowski59 · Amadou Alpha Sall60 · Maria S. Salvato61 · Takahide Sasaya62 · Shū Shěn19 · Xiǎohóng Shí63 · Yukio Shirako64 · Peter Simmonds65 · Manuela Sironi66 · Jin‑Won Song67 · Jessica R. Spengler9 · Mark D. Stenglein68 · Zhèngyuán Sū19 · Sùróng Sūn14 · Shuāng Táng19 · Massimo Turina69 · Bó Wáng19 · Chéng Wáng1 · Huálín Wáng19 · Jūn Wáng19 · Tàiyún Wèi70 · Anna E.
    [Show full text]
  • A Look Into Bunyavirales Genomes: Functions of Non-Structural (NS) Proteins
    viruses Review A Look into Bunyavirales Genomes: Functions of Non-Structural (NS) Proteins Shanna S. Leventhal, Drew Wilson, Heinz Feldmann and David W. Hawman * Laboratory of Virology, Rocky Mountain Laboratories, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, MT 59840, USA; [email protected] (S.S.L.); [email protected] (D.W.); [email protected] (H.F.) * Correspondence: [email protected]; Tel.: +1-406-802-6120 Abstract: In 2016, the Bunyavirales order was established by the International Committee on Taxon- omy of Viruses (ICTV) to incorporate the increasing number of related viruses across 13 viral families. While diverse, four of the families (Peribunyaviridae, Nairoviridae, Hantaviridae, and Phenuiviridae) contain known human pathogens and share a similar tri-segmented, negative-sense RNA genomic organization. In addition to the nucleoprotein and envelope glycoproteins encoded by the small and medium segments, respectively, many of the viruses in these families also encode for non-structural (NS) NSs and NSm proteins. The NSs of Phenuiviridae is the most extensively studied as a host interferon antagonist, functioning through a variety of mechanisms seen throughout the other three families. In addition, functions impacting cellular apoptosis, chromatin organization, and transcrip- tional activities, to name a few, are possessed by NSs across the families. Peribunyaviridae, Nairoviridae, and Phenuiviridae also encode an NSm, although less extensively studied than NSs, that has roles in antagonizing immune responses, promoting viral assembly and infectivity, and even maintenance of infection in host mosquito vectors. Overall, the similar and divergent roles of NS proteins of these Citation: Leventhal, S.S.; Wilson, D.; human pathogenic Bunyavirales are of particular interest in understanding disease progression, viral Feldmann, H.; Hawman, D.W.
    [Show full text]
  • And Evidence That Estero Real Virus Is a Member of the Genus Orthonairovirus
    Am. J. Trop. Med. Hyg., 99(2), 2018, pp. 451–457 doi:10.4269/ajtmh.18-0201 Copyright © 2018 by The American Society of Tropical Medicine and Hygiene Genetic Characterization of the Patois Serogroup (Genus Orthobunyavirus; Family Peribunyaviridae) and Evidence That Estero Real Virus is a Member of the Genus Orthonairovirus Patricia V. Aguilar,1,2,3* William Marciel de Souza,4 Jesus A. Silvas,1,2,3 Thomas Wood,5 Steven Widen,5 Marc´ılio Jorge Fumagalli,4 and Marcio ´ Roberto Teixeira Nunes6* 1Department of Pathology, University of Texas Medical Branch, Galveston, Texas; 2Institute for Human Infection and Immunity, Galveston, Texas; 3Center for Tropical Diseases, Galveston, Texas; 4Virology Research Center, School of Medicine of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Sao Paulo, Brazil; 5Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas; 6Center for Technological Innovation, Instituto Evandro Chagas, Ananindeua, Para, ´ Brazil Abstract. Estero Real virus (ERV) was isolated in 1980 from Ornithodoros tadaridae ticks collected in El Estero Real, Sancti Spiritus, Cuba. Antigenic characterization of the isolate based on serological methods found a relationship with Abras and Zegla viruses and, consequently, the virus was classified taxonomically within the Patois serogroup. Given the fact that genetic characterization of Patois serogroup viruses has not yet been reported and that ERV is the only virus within the Patois serogroup isolated from ticks, we recently conducted nearly complete genome sequencing in an attempt to gain further insight into the genetic relationship of ERV with other Patois serogroup viruses and members of Peri- bunyaviridae family (Bunyavirales order).
    [Show full text]
  • Development of an Infectious Clone System to Study the Life Cycle of Hazara Virus
    Development of an Infectious Clone System to Study the Life Cycle of Hazara Virus Jack Fuller Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds Faculty of Biological Sciences July 2020 i The candidate confirms that the work submitted is his own and that appropriate credit has been given where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. © 2020 The University of Leeds and Jack Fuller ii Acknowledgements I would like to thank my supervisors, John, Jamel and Roger for their endless support and fresh ideas throughout my PhD. A special thanks go to John for always providing enthusiasm and encouragement, especially during the tougher times of the project! I would also like to thank everyone in 8.61, not only for making my time at Leeds enjoyable, but for helping me develop as a scientist through useful critique and discussion. A special thanks goes to Francis Hopkins, for welcoming me into the Barr group and providing a constant supply of humour and to Ellie Todd, for listening to my endless whines and gripes, and for providing welcome distractions in the form of her PowerPoint artwork. Outside of the lab, my mum deserves a special mention for always being the voice of reason and support at the end of the phone, but also for pushing me to succeed throughout my entire education. I have no doubts I would not be in the position I am now without her! Finally, a huge thanks to my partner Hannah, who has been there to support me through all the highs and lows of my PhD, and has sacrificed many weekend trips to allow me to finish experiments and to tend to my viruses! iii Abstract Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV) is a negative sense single stranded RNA virus, capable of causing fatal hemorrhagic fever in humans.
    [Show full text]
  • Crimean-Congo Hemorrhagic Fever Virus: Current Advances and Future Prospects of Antiviral Strategies
    viruses Review Crimean-Congo Hemorrhagic Fever Virus: Current Advances and Future Prospects of Antiviral Strategies Shiyu Dai 1, Fei Deng 1,2,* , Hualin Wang 1,2,* and Yunjia Ning 1,2,* 1 State Key Laboratory of Virology and National Virus Resource Center, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China; [email protected] 2 Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan 430071, China * Correspondence: [email protected] (F.D.); [email protected] (H.W.); [email protected] (Y.N.); Tel./Fax: +86-27-8719-8465 (F.D.); +86-27-8719-9353 (H.W.); +86-27-8719-7200 (Y.N.) Abstract: Crimean-Congo hemorrhagic fever virus (CCHFV) is a widespread, tick-borne pathogen that causes Crimean-Congo hemorrhagic fever (CCHF) with high morbidity and mortality. CCHFV is transmitted to humans through tick bites or direct contact with patients or infected animals with viremia. Currently, climate change and globalization have increased the transmission risk of this biosafety level (BSL)-4 virus. The treatment options of CCHFV infection remain limited and there is no FDA-approved vaccine or specific antivirals, which urges the identification of potential therapeutic targets and the design of CCHF therapies with greater effort. In this article, we discuss the current progress and some future directions in the development of antiviral strategies against CCHFV. Keywords: Crimean-Congo hemorrhagic fever virus; bunyavirus; tick-borne virus; antiviral strategies Citation: Dai, S.; Deng, F.; Wang, H.; Ning, Y. Crimean-Congo 1. Introduction Hemorrhagic Fever Virus: Current Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne virus causing Advances and Future Prospects of Crimean-Congo hemorrhagic fever (CCHF), a severe hemorrhagic fever in humans, with a Antiviral Strategies.
    [Show full text]
  • (CCHFV): Surveillance Studies Among D
    University of Veterinary Medicine Hannover Crimean-Congo hemorrhagic fever orthonairovirus (CCHFV): Surveillance studies among different livestock in sub-Saharan Africa and the molecular characterization of Hyalomma ticks serving as main reservoir and vector Inaugural-Dissertation to obtain the academic degree Doctor medicinae veterinariae (Dr. med. vet.) submitted by Ansgar Schulz Wismar Hannover 2020 Academic supervision: Prof. Dr. Martin H. Groschup Friedrich-Loeffler-Institut Federal Research Institute for Animal Health Institute of Novel and Emerging Infectious Diseases Greifswald-Insel Riems 1. Referee: Prof. Dr. Martin H. Groschup Friedrich-Loeffler-Institut Federal Research Institute for Animal Health Institute of Novel and Emerging Infectious Diseases Greifswald - Insel Riems 2. Referee: Prof. Dr. Christina Strube Institute of Parasitology University of Veterinary Medicine Hannover Hannover Day of the oral examination: 16th June 2020 - Sponsorship: This work was supported by the German Federal Foreign Office in the framework of the German Partnership Program for Excellence in Biological and Health Security. TABLE OF CONTENTS 1 INTRODUCTION ...........................................................................01 2 LITERATURE REVIEW ................................................................04 2.1 History and naming of CCHFV ..........................................................................04 2.2 Classification ......................................................................................................04
    [Show full text]
  • Complete Sections As Applicable
    This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc (to be completed by ICTV Code assigned: 2016.026a,bM officers) Short title: Create five (5) new species in the genus Nairovirus (proposed family Nairoviridae, proposed order Bunyavirales), rename the genus Orthonairovirus, and rename all existing species (e.g. 6 new species in the genus Zetavirus) Modules attached 2 3 4 5 (modules 1 and 11 are required) 6 7 8 9 10 Author(s): Jens H. Kuhn, [email protected] Sergey V. Alkhovskii, [email protected] Yīmíng Bào, [email protected] Gustavo Palacios, [email protected] Robert B. Tesh, [email protected] Nikolaos Vasilakis, [email protected] Peter J. Walker, [email protected] Corresponding author with e-mail address: Jens H. Kuhn, [email protected] List the ICTV study group(s) that have seen this proposal: A list of study groups and contacts is provided at http://www.ictvonline.org/subcommittees.asp . If in doubt, contact the appropriate subcommittee ICTV Bunyaviridae Study Group chair (fungal, invertebrate, plant, prokaryote or vertebrate viruses) ICTV Study Group comments (if any) and response of the proposer: The ICTV Bunyaviridae Study Group has seen and discussed this proposal, and agreed to its submission to the ICTV Executive Committee based on votes of support by individual Study Group members or the absence of dissenting votes.
    [Show full text]
  • 2021 Taxonomic Update of Phylum Negarnaviricota (Riboviria: Orthornavirae), Including the Large Orders Bunyavirales and Mononegavirales
    Archives of Virology https://doi.org/10.1007/s00705-021-05143-6 VIROLOGY DIVISION NEWS 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales Jens H. Kuhn1 · Scott Adkins2 · Bernard R. Agwanda211,212 · Rim Al Kubrusli3 · Sergey V. Alkhovsky (Aльxoвcкий Cepгeй Bлaдимиpoвич)4 · Gaya K. Amarasinghe5 · Tatjana Avšič‑Županc6 · María A. Ayllón7,197 · Justin Bahl8 · Anne Balkema‑Buschmann9 · Matthew J. Ballinger10 · Christopher F. Basler11 · Sina Bavari12 · Martin Beer13 · Nicolas Bejerman14 · Andrew J. Bennett15 · Dennis A. Bente16 · Éric Bergeron17 · Brian H. Bird18 · Carol D. Blair19 · Kim R. Blasdell20 · Dag‑Ragnar Blystad21 · Jamie Bojko22,198 · Wayne B. Borth23 · Steven Bradfute24 · Rachel Breyta25,199 · Thomas Briese26 · Paul A. Brown27 · Judith K. Brown28 · Ursula J. Buchholz29 · Michael J. Buchmeier30 · Alexander Bukreyev31 · Felicity Burt32 · Carmen Büttner3 · Charles H. Calisher33 · Mengji Cao (曹孟籍)34 · Inmaculada Casas35 · Kartik Chandran36 · Rémi N. Charrel37 · Qi Cheng38 · Yuya Chiaki (千秋祐也)39 · Marco Chiapello40 · Il‑Ryong Choi41 · Marina Ciufo40 · J. Christopher S. Clegg42 · Ian Crozier43 · Elena Dal Bó44 · Juan Carlos de la Torre45 · Xavier de Lamballerie37 · Rik L. de Swart46 · Humberto Debat47,200 · Nolwenn M. Dheilly48 · Emiliano Di Cicco49 · Nicholas Di Paola50 · Francesco Di Serio51 · Ralf G. Dietzgen52 · Michele Digiaro53 · Olga Dolnik54 · Michael A. Drebot55 · J. Felix Drexler56 · William G. Dundon57 · W. Paul Duprex58 · Ralf Dürrwald59 · John M. Dye50 · Andrew J. Easton60 · Hideki Ebihara (海老原秀喜)61 · Toufc Elbeaino62 · Koray Ergünay63 · Hugh W. Ferguson213 · Anthony R. Fooks64 · Marco Forgia65 · Pierre B. H. Formenty66 · Jana Fránová67 · Juliana Freitas‑Astúa68 · Jingjing Fu (付晶晶)69 · Stephanie Fürl70 · Selma Gago‑Zachert71 · George Fú Gāo (高福)214 · María Laura García72 · Adolfo García‑Sastre73 · Aura R.
    [Show full text]
  • Nairobi Sheep Disease Virus (NSDV) in Africa
    Nairobi Importance Nairobi sheep disease is a one of the most pathogenic diseases of small Sheep Disease ruminants. In susceptible animals, this tick-borne viral infection results in a hemorrhagic gastroenteritis with very high morbidity and mortality rates. Until recently, the causative viruses were only known to exist in parts of Africa and on the Indian subcontinent. However, viral RNA was recently identified in ticks in China. Last Updated: June 2016 There is no effective treatment, and eradication is generally not feasible once the virus has become established in ticks. Minor Edits: June 2020 Etiology Nairobi sheep disease is caused by Nairobi sheep disease virus (NSDV) in Africa or a variant called Ganjam virus in Asia. Despite the two names, NSDV and Ganjam virus are now considered to be the same virus, which belongs to the genus Orthonairovirus in the family Nairoviridae and order Bunyavirales. Currently, its officially accepted species name is Nairobi sheep disease orthonairovirus. Some sources classify nairoviruses by serology. In this classification, NSDV/ Ganjam virus belongs to the Nairobi sheep disease virus serogroup, together with Dugbe virus and Kupe virus, which have been isolated from livestock ticks but are not known to cause any illness in animals. Species Affected Among domesticated and laboratory animals, only sheep and goats can be infected readily by NSDV/ Ganjam virus, and only these species appear to be important as reservoir hosts. A few fatal cases of Nairobi sheep disease have been reported among blue duikers (Cephalophus monticola) in zoos or in the wild. However, African wildlife are not thought to be important in maintaining this virus.
    [Show full text]
  • Genomic Characterisation of Vinegar Hill Virus, an Australian Nairovirus Isolated in 1983 from Argas Robertsi Ticks Collected from Cattle Egrets
    viruses Article Genomic Characterisation of Vinegar Hill Virus, An Australian Nairovirus Isolated in 1983 from Argas Robertsi Ticks Collected from Cattle Egrets Penelope J. Gauci 1,* ID , Jane McAllister 1, Ian R. Mitchell 1, Daisy Cybinski 2, Toby St George 2 and Aneta J. Gubala 1 1 Land Division, Defence Science & Technology Group, Fishermans Bend, Victoria 3207, Australia; [email protected] (J.M.); [email protected] (I.R.M.); [email protected] (A.J.G.) 2 Formerly: Long Pocket Laboratories, Commonwealth Scientific and Industrial Research Organisation, Indooroopilly, Queensland 4068, Australia; [email protected] (D.C.); [email protected] (T.S.G.) * Correspondence: [email protected]; Tel.: +61-3-9626-8379 Received: 8 November 2017; Accepted: 28 November 2017; Published: 5 December 2017 Abstract: This report describes the near complete genomic sequence and subsequent analysis of Vinegar Hill virus (VINHV; tentative member of the genus Orthonairovirus, family Nairoviridae, order Bunyavirales). VINHV is the second nairovirus reported to be isolated on mainland Australia and the first to be sequenced and analysed. Our genetic analysis shows that VINHV belongs to the Dera Ghazi Khan genogroup, a group of viruses previously isolated in other parts of the world including Asia, South Africa, and the USA. We discuss possible routes of entry for nairoviruses into Australia and the need to understand the virome of Australian ticks in the context of new and emerging disease. Keywords: Bunyavirales; Nairoviridae; Orthonairovirus; virus; ticks; genome; characterisation; Australia 1. Introduction The genus Orthonairovirus (family Nairoviridae, order Bunyavirales) comprises 12 species to which more than 60 predominantly tick-borne viruses have been assigned, including several associated with severe human and livestock disease such as Crimean-Congo haemorrhagic fever (CCHF) and Nairobi sheep disease (NSD) viruses, respectively [1–3].
    [Show full text]
  • Crimean – Congo Haemorrhagic Fever Virus – an Arbovirus of International Concern?
    World Health Organization Collaborating Centre for Virus Research & Reference (Arboviruses & VHFs) Porton Down 1978 Crimean – Congo Haemorrhagic fever virus – an arbovirus of international concern? Prof. Roger Hewson Virology & Pathogenesis Group Lead Head: WHO Collaborating Centre for Virus Reference and Research (Arboviruses & VHFs) Dangerous Infections: New Public Health England - Microbiology Services Solution – A Look into the Future Porton Down, Oct 2-3 2019 Salisbury, UK Summary o Background • Taxonomy • Bunyavirales / Nairovirus / Orthonairovirus • CCHF disease / Transmission / Outbreaks • Historical perspective o Laboratory containment o Virus biology / Evolutionary potential o Human activity (increased zoonotic events) o Diagnostics o Vaccines o Conclusions Order Bunyavirales • Single stranded –ve sense RNA • Lipid enveloped • Segmented genome [Small, (Medium) Large] • Arthropod borne (x Hanta x Arena) • Human disease (some) • 10 Families Arenaviridae (3), Cruliviridae (1), Fimoviridae (1) Hantaviridae (3) Mypoviridae (1) Nairoviridae (3) Peribunaviridae (4) Phasmaviridae (5) Phenuiviridae (12), Wupedeviridae (1) Genus Mammarenavirus Orthohantavirus Orthobunyavirus Orthonairovirus Phlebovirus Banyangvirus Species 34 35 49 14 9 1 Host / Res Rodents Rodents Rodents Rodent / rum / tick Ruminant Rum / tick Vector Rodents Rodents Mosquito Ticks Mosquito Ticks Disease e.g. Lassa / Junin HFRS / HPS Oropuche fever CCHF RVFV SFTS 3 Bunyavirales – medically (& veterinary, agriculturally) important order Family Nairovirus Genus Orthonairovirus
    [Show full text]