Alterations in Cultured Fibroblasts of Sibs with an Infantile Form of a Free (Unbound) Sialic Acid Storage Disorder

Total Page:16

File Type:pdf, Size:1020Kb

Alterations in Cultured Fibroblasts of Sibs with an Infantile Form of a Free (Unbound) Sialic Acid Storage Disorder Pediatr. Res. 17: 307-312 (1983) Alterations in Cultured Fibroblasts of Sibs with an Infantile Form of a Free (Unbound) Sialic Acid Storage Disorder GEORGE H. THO MAS,'^^' JANE SCOCCA, JACQUES LIBERT, ESTER VAMOS, CAROL S. MILLER, AND LINDA W. REYNOLDS The John F. Kennedy Institute, Baltimore, Maryland [G.H.T., J.S., C.S.M., L. W.R.]; Department of Pediatrics and Medicine, The Johns Hopkins University, School of Medicine, Baltimore, Maryland [G.H. T.]; Department of Ophthalmology, Hospital Saint Pierre, UniversitP Libre de Bruxelles, Brussels, Belgium [J.L.]; and Department of Pediatrics, Hospital Saint-Pierre, Universitd Libre de Bruxelles, Brussels, Belgium [E. V.] Summary storage of "bound" sialic acid but, rather, from an increased accumulation and excretion of free sialic acid. In contrast to the Cultured fibroblasts from two sibs with generalized hypertonia, sialidosis patients, these individuals have normal to above normal hepatosplenomegaly, and psychomotor retardation within the first levels of sialidase. The clinical and/or biochemical findings in year of life were found to have unusual morphologic features. these patients clearly indicate that they suffer from a disorder When examined by phase microscopy, the unstained and unfixed distinct from either Salla disease (3, 17) or sialuria (15), both of cells contained a large number of vacuolated structures whose which are also characterized by an increased accumulation and/ gross appearance resembled that of a honeycomb in the cell or excretion of unbound sialic acid. These sibs, however, do cytoplasm. Electron microscopy studies, following fixation, showed appear to have certain features in common with patients recently the "honeycombing" to be the result of numerous, closely packed, described by Hancock et al. (5) and by Stevenson et al. (18). cytoplasmic, membrane-bound vacuoles. In some of these struc- tures the remains of fibrillogranular material could be detected. MATERIALS AND METHODS Biochemical analysis of crude snnicates of these cells revealed increased levels (4-7 x N) of an acid soluble component that Cultured fibroblasts were established from skin biopsies of the reacted with thiobarbituric acid. Analysis of trimethylsilyl deriva- patients and controls as previously described (13, 19). For bio- tives of this material by gas liquid chromatography and mass chemical studies, cells from two confluent cultures (75 cm2 tissue spectrometry showed it to be indistinguishable from sialic acid (N- culture flasks) containing approximately 2 mg protein were har- acetylneuraminic acid). vested with trypsin 7 days after subculture, pooled and washed Quantitation of this material from the cells of one of the sibs three times in phosphate buffered saline with centrifugation after after isolation on a Dowex column yielded 39.8 nmoles of free each wash step. The washed cells were resuspended in 2.0 ml of (unbound) sialic acid per mg protein whereas normal fibroblasts deionized water and ruptured by ultrasonication (three 10-sec had 1-2 nmoles per mg. Bound sialic acid levels were at the upper treatments with intervals for cooling in ice water). Free sialic acid limits of normal (24.8 versus 11-23 nmoles per mg protein). The levels in 0.1-ml samples of the sonicates were measured by the concentration of cytidine monophosphate-sialic acid was normal. thiobarbituric acid method as described by Aminoff (2) and After incubation of the patient's fibroblasts with [3H]-~-acetyl- modified by Uchida et al. (24). CMP-sialic acid was measured maunosamine for 72 h, there was a 7-fold increase (compared to after destruction of free sialic acid with sodium borohydride normal fibroblasts) in the amount of radioactivity in free sialic acid according to the method of Kean and Roseman (10). present in the acid soluble fraction. The amount of labeled, bound Where indicated, the free sialic acid was separated from crude sialic acid in the acid-insoluble pool, however, was the same in cell sonicates before quantitation and/or preparation of deriva- both patient and control fibroblasts. tives for gas liquid chromatography-mass Geckometry. For these studies the crude sonicates were treated with ~erchloricacid (final concentration of 3.5%), allowed to stand 10 min, centrifuged (7700 Abbreviations x g for 10 min) and the supernatants removed and saved for CMP, cytidine monophosphate analysis. Precipitates were washed twice with 0.2 ml of HzO and NANA, N-acetyl-neuraminic acid the washes were added to the supernatants. Supernatants were PBS, phosphate buffered saline neutralized with KOH, centrifuged to remove potassium perchlo- TCA, trichloracetic acid rate, and applied to 0.5 x 5 cm columns of Dowex 1 x 8 acetate UDP, uridine diphosphate (100-200 mesh). Two 0.5-ml water washes of the sample tube were added to the column. The columns were then eluted with 10% acetic acid (1 1). The first 5 ml of the column effluent was Over the past few years several clinical forms of sialidosis have discarded; the next 12.5 ml was collected, evaporated to dryness been described (14). Common to each of these related disorders under reduced pressure on a rotary evaporator and dissolved in has been an increased accumulation and/or excretion of sialic 1.0 ml of water for quantitation with thiobarbituric acid and/or acid (N-acetylneuraminic acid) covalently linked to a variety of preparation of derivatives. Methylesters were prepared using oligosaccharides and/or glycoproteins. Additionally, it has been methanol and Dowex 50 x 8 H+ (12). Trimethylsilylation of the demonstrated that these alterations are associated with, and pre- methyl esters of the sialic acid in the isolated samples was per- sumptively the result of, a deficiency of a lysosomal sialidase formed as described by Kamerling et al. (9). The derivatives were (neuraminidase) (4, 20, 22). analyzed by gas chromatography using a Packard Model 421 We now describe the morphologic and biochemical features of Becker gas chromatograph with a flame ionization detector, hav- fibroblasts cultured from two infants (sibs) who suffer not from a ing a 6 ft x 4 mm internal diameter column packed with 3% SE 30 308 THOMAS ET AL. at a nitrogen carrier flow rate of 40 ml per min. The temperature NaHC03 (KC Biological Inc., Lenexa, KS) supplemented with was programmed to rise from 180" to 250°C at 5OC per min. Gas heat inactivated, dialyzed fetal calf serum (13%), glutamine (1.7 chromatography-mass spectrometry analyses were performed on pmoie per ml), glucose (86 pg per ml) and 22.8 mCi per mmole a Dupont DP -102 gas chromatography unit using a 5 ft x 2 mm [3~]~-acetyl-~-mannosamine(50 pCi per ml). The cells were internal diameter column packed with 3% OV-101 at a nitrogen maintained at 37°C in a humidified atmosphere of 5% C02-95% carrier flow rate of 22 ml per min with the temperature pro- air. grammed to increase from 180°C to 280°C in 15 min (9). After incubation, the media was removed, the cells were washed To examine the synthesis of sialic acid from [3H]~-acetylman- 6 times with 1 ml quantities of PBS and harvested with trypsin nosamine, skin fibroblasts were plated in 60 mm tissue culture (13, 19). The trypsinized cells were washed 3 times with 2 ml dishes and incubated as previously described (13, 19). When quantities of PBS, suspended in 0.5 ml water and sonicated for confluent (usually 4 days), the media was removed, the cells three 10-sec periods. To 0.4 ml cell sonicates, UDP-N-acetylglu- washed with 2 ml of sterile PBS and then incubated with 2 ml of cosamine (200 nmoles), sialic acid (3 15 nmoles) and N-acetylman- glucose-free MEM/Earle7s Base buffered with 25 mM Hepes and nosamine (464 nmoles) were added, bringing the volume to 0.6 ml. Cold 25% TCA (0.4 ml) was added. After standing for 15 min on ice, the sample was centrifuged in the cold at 1084 x g for 10 Table 1. Lysosomal enzyme activities in sonicates of cultured min, and the supernatant was removed and saved. The precipitate fibroblasts of affected sibs and controls' was washed with 1 ml of cold 10% TCA and the wash combined Normal Normal with the original TCA supernatant. The TCA insoluble precipitate Enzyme Sib I Sib 2 mean + 2 S.D. range was stored at -60°C for later studies whereas the combined TCA soluble fraction was extracted with ether, neutralized with am- f PNP N-acetyl-/3-glucos- 10,785 10,823 4383 1392 3071-5742 monium hydroxide, and stored as above. arninidase'" The neutralized, soluble fractions were applied to ion-exchange PNP a-fucosidase 130 72 35 +22 18-65 columns (0.5 x 4 cm) of Dowex 1 x 8 (200-400 mesh) in the PNP P-galactosidase 810 1040 581 +I86 419-760 formate form prepared according to the method of Hurlbert et al. PNP a-mannosidase 229 469 101 +70 65-221 (8). Columns were washed overnight with deionized water before PNP P-rnannosidase 275 565 188 +I38 102-238 sample application. Radioactive metabolites were eluted and col- Aspartylglucosamini- 248 277 57 +42 27-131 lected in 0.5-ml fractions at a rate of approximately 0.5 ml per dase min according to a modification of the method of Akamatsu et al. 4Mu-N-acetyl-/3-glucos- (I) as follows: 7.5 ml of sample + water; 7.5 ml of 0.01 M formic arninidase2 acid; 7.5 ml of 1 M formic acid; 7.5 ml of 4.0 M formic acid and Total 7424 8428 3121 +I462 1966-4086 7.5 ml of 4 M formic acid/0.4 M ammonium formate. Fifty pliters %A 51 31 54 +I0 49-65 from each fraction was added to Liquiscint (National Diagnostics, ' Values expressed as nmoles of substrate cleaved per rng protein per h.
Recommended publications
  • 1. Nucleotides A. Pentose Sugars – 5-Carbon Sugar 1) Deoxyribose – in DNA 2) Ribose – in RNA B. Phosphate Group C. Nitroge
    1. Nucleotides a. Pentose sugars – 5-Carbon sugar 1) Deoxyribose – in DNA 2) Ribose – in RNA b. Phosphate group c. Nitrogenous bases 1) Purines a) Adenine b) Guanine 2) Pyrimidines a) Cytosine b) Thymine 2. Types of Nucleic Acids a. DNA 1) Locations 2) Functions b. RNA 1) Locations 2) Functions E. High Energy Biomolecules 1. Adenosine triphosphate a. Uses 1) Active transport 2) Movement 3) Biosynthesis reactions b. Regeneration 1) ADP + Pi + Energy → ATP 4. Classes of proteins a. Structural – ex. Collagen, keratin b. Transport – Hemoglobin, many β-globulins c. Contractile – Actin and Myosin of muscle tissue d. Regulatory - Hormones e. Immunologic - Antibodies f. Clotting – Thrombin and Fibrin g. Osmotic - Albumin h. Catalytic – Enzymes 1) Characteristics of enzymes • Proteins (most); ribonucleoproteins (few/ribozymes) • Act as organic catalysts • Lower the activation energy of reactions • Not changed by the reaction • Bind to their substrates o Lock-and-key model of enzyme activity o Induced-fit model • Highly specific • Named by adding -ase to substrate name; e.g., maltose/maltase • May require cofactors which may be: o Nonprotein metal ions such as copper, manganese, potassium, sodium o Small organic molecules known as coenzymes. The B vitamins like thiamine (B1) riboflavin (B2) and nicotinamide are precursors of coenzymes. • May require activation; e.g., pepsinogen pepsin in stomach chief cells 4. Factors Affecting Enzyme Action • pH o pepsin (stomach) @ pH = 2; trypsin (small int.) @ pH = 8 • Temperature o Denatured by high temp’s. • Enzyme inhibitors o Competitive inhibitors o Noncompetitive inhibitors • Effect of substrate concentration and reversible reactions and the Law of Mass D.
    [Show full text]
  • Multi-Enzymatic Cascades in the Synthesis of Modified Nucleosides
    biomolecules Article Multi-Enzymatic Cascades in the Synthesis of Modified Nucleosides: Comparison of the Thermophilic and Mesophilic Pathways Ilja V. Fateev , Maria A. Kostromina, Yuliya A. Abramchik, Barbara Z. Eletskaya , Olga O. Mikheeva, Dmitry D. Lukoshin, Evgeniy A. Zayats , Maria Ya. Berzina, Elena V. Dorofeeva, Alexander S. Paramonov , Alexey L. Kayushin, Irina D. Konstantinova * and Roman S. Esipov Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997 GSP, B-437 Moscow, Russia; [email protected] (I.V.F.); [email protected] (M.A.K.); [email protected] (Y.A.A.); [email protected] (B.Z.E.); [email protected] (O.O.M.); [email protected] (D.D.L.); [email protected] (E.A.Z.); [email protected] (M.Y.B.); [email protected] (E.V.D.); [email protected] (A.S.P.); [email protected] (A.L.K.); [email protected] (R.S.E.) * Correspondence: [email protected]; Tel.: +7-905-791-1719 ! Abstract: A comparative study of the possibilities of using ribokinase phosphopentomutase ! nucleoside phosphorylase cascades in the synthesis of modified nucleosides was carried out. Citation: Fateev, I.V.; Kostromina, Recombinant phosphopentomutase from Thermus thermophilus HB27 was obtained for the first time: M.A.; Abramchik, Y.A.; Eletskaya, a strain producing a soluble form of the enzyme was created, and a method for its isolation and B.Z.; Mikheeva, O.O.; Lukoshin, D.D.; chromatographic purification was developed. It was shown that cascade syntheses of modified nu- Zayats, E.A.; Berzina, M.Y..; cleosides can be carried out both by the mesophilic and thermophilic routes from D-pentoses: ribose, Dorofeeva, E.V.; Paramonov, A.S.; 2-deoxyribose, arabinose, xylose, and 2-deoxy-2-fluoroarabinose.
    [Show full text]
  • DNA Stands for Deoxyribose Nucleic Acid
    DNA and Protein Synthesis DNA • DNA stands for deoxyribose nucleic acid. • This chemical substance is found in the nucleus of all cells in all living organisms • DNA controls all the chemical changes which take place in cells • The kind of cell which is formed, (muscle, blood, nerve etc) is controlled by DNA Ribose is a sugar, like glucose, but with only five carbon atoms in its molecule. Deoxyribose is almost the same but lacks one oxygen atom. The nitrogen bases are: o ADENINE (A) o THYMINE (T) o CYTOSINE (C) o GUANINE (G) Nucleotides • A molecule of DNA is formed by millions of nucleotides joined together in a long chain. • DNA is a very large molecule made up of a long chain of sub-units. • The sub-units are called nucleotides. • Each nucleotide is made up of a sugar called deoxyribose, a phosphate group -PO4 and an organic (Nitrogen) base: A, T, C, G BASE PAIRING RULE amount of C= amount of G AND amount of A= amount of T • Adenine always pairs with thymine, and guanine always pairs with cytosine. DNA STRUCTURE • The nucleotide bases will point to the inside of the DNA molecule while the outside (backbone) of the DNA molecule will be made of the sugar and phosphate molecules. • When complete the DNA molecule forms a double helix (two spiral sides wrapped together). • The paired strands are coiled into a spiral called A DOUBLE HELIX. Genes • Each chromosome contains hundreds of genes. • Most of your characteristics: hair color, height, how things taste to a person, are determined by the kinds of proteins cells make (gene).
    [Show full text]
  • (12) United States Patent (10) Patent No.: US 8,604,000 B2 De Kort Et Al
    USOO8604000B2 (12) United States Patent (10) Patent No.: US 8,604,000 B2 de Kort et al. (45) Date of Patent: Dec. 10, 2013 (54) PALATABLE NUTRITIONAL COMPOSITION 2011/0027391 A1 2/2011 De Kort et al. COMPRISING ANUCLEOTDE AND/ORA 2013, OO12469 A1 1/2013 De Kort et al. NUCLEOSDE AND A TASTE MASKING 2013, OO18012 A1 1/2013 Hageman et al. AGENT FOREIGN PATENT DOCUMENTS (75) Inventors: Esther Jacqueline de Kort, Wageningen EP O 175468 A2 3, 1986 (NL); Martine Groenendijk, EP 1216 041 B1 6, 2002 EP 1282 365 B1 2, 2003 Barendrecht (NL); Patrick Joseph EP 1656 839 A1 5, 2006 Gerardus Hendrikus Kamphuis, EP 1666 092 A2 6, 2006 Utrecht (NL) EP 18OO 675 A1 6, 2007 JP 64-080250 A 3, 1989 (73) Assignee: N.V. Nutricia, Zoetermeer (NL) JP 06-237734. A 8, 1994 JP 10-004918 A 1, 1998 JP 10-136937 A 5, 1998 (*) Notice: Subject to any disclaimer, the term of this JP 11-071274. A 3, 1999 patent is extended or adjusted under 35 WO WO-0038829 A1 T 2000 U.S.C. 154(b) by 213 days. WO WO-01 (32034 A1 5, 2001 WO WO-02/088159 A1 11, 2002 WO WO-02/096464 A1 12/2002 (21) Appl. No.: 12/809,431 WO WO-03 (013276 A1 2, 2003 WO WO-03/041701 A2 5, 2003 (22) PCT Filed: Dec. 22, 2008 WO WO-2005/039597 A2 5, 2005 WO WO-2006/031683 A2 3, 2006 (86). PCT No.: PCT/NL2O08/050843 WO WO-2006,118665 A2 11/2006 WO WO-2006, 127620 A2 11/2006 S371 (c)(1), WO WO-2007/001883 A2 1, 2007 (2), (4) Date: Dec.
    [Show full text]
  • Nucleosides & Nucleotides
    Nucleosides & Nucleotides Biochemistry Fundamentals > Genetic Information > Genetic Information NUCLEOSIDE AND NUCLEOTIDES SUMMARY NUCLEOSIDES  • Comprise a sugar and a base NUCLEOTIDES  • Phosphorylated nucleosides (at least one phosphorus group) • Link in chains to form polymers called nucleic acids (i.e. DNA and RNA) N-BETA-GLYCOSIDIC BOND  • Links nitrogenous base to sugar in nucleotides and nucleosides • Purines: C1 of sugar bonds with N9 of base • Pyrimidines: C1 of sugar bonds with N1 of base PHOSPHOESTER BOND • Links C3 or C5 hydroxyl group of sugar to phosphate NITROGENOUS BASES  • Adenine • Guanine • Cytosine • Thymine (DNA) 1 / 8 • Uracil (RNA) NUCLEOSIDES • =sugar + base • Adenosine • Guanosine • Cytidine • Thymidine • Uridine NUCLEOTIDE MONOPHOSPHATES – ADD SUFFIX 'SYLATE' • = nucleoside + 1 phosphate group • Adenylate • Guanylate • Cytidylate • Thymidylate • Uridylate Add prefix 'deoxy' when the ribose is a deoxyribose: lacks a hydroxyl group at C2. • Thymine only exists in DNA (deoxy prefix unnecessary for this reason) • Uracil only exists in RNA NUCLEIC ACIDS (DNA AND RNA)  • Phosphodiester bonds: a phosphate group attached to C5 of one sugar bonds with - OH group on C3 of next sugar • Nucleotide monomers of nucleic acids exist as triphosphates • Nucleotide polymers (i.e. nucleic acids) are monophosphates • 5' end is free phosphate group attached to C5 • 3' end is free -OH group attached to C3 2 / 8 FULL-LENGTH TEXT • Here we will learn about learn about nucleoside and nucleotide structure, and how they create the backbones of nucleic acids (DNA and RNA). • Start a table, so we can address key features of nucleosides and nucleotides. • Denote that nucleosides comprise a sugar and a base.
    [Show full text]
  • Part 1 in Our Series of Carbohydrate Lectures. in This Section, You Will Learn About Monosaccharide Structure
    Welcome to Part 1 in our series of Carbohydrate lectures. In this section, you will learn about monosaccharide structure. The building blocks of larger carbohydrate polymers. 1 First, let’s review why learning about carbohydrates is important. Carbohydrates are used by biological systems as fuels and energy resources. Carbohydrates typically provide quick energy and are one of the primary energy storage forms in animals. Carbohydrates also provide the precursors to other major macromolecules within the body, including the deoxyribose and ribose required for nucleic acid biosynthesis. Carbohydrates can also provide structural support and cushioning/shock absorption, as well as cell‐cell communication, identification, and signaling. 2 Carbohydrates, as their name implies, are water hydrates of carbon, and they all have the same basic core formula (CH2O)n and are always found in the ratio of 1 carbon to 2 hydrogens to 1 oxygen (1:2:1) making them easy to identify from their molecular formula. 3 Carbohydrates can be divided into subcategories based on their complexity. The simplest carbohydrates are the monosaccharides which are the simple sugars required for the biosynthesis of all the other carbohydrate types. Disaccharides consist of two monosaccharides that have been joined together by a covalent bond called the glycosidic bond. Oligosaccharides are polymers that consist of a few monosaccharides covalently linked together, and Polysaccharides are large polymers that contain hundreds to thousands of monosaccharide units all joined together by glycosidic bonds. The remainder of this lecture will focus on monosaccharides 4 Monosaccharides all have alcohol functional groups associated with them. In addition they also have one additional functional group, either an aldehyde or a ketone.
    [Show full text]
  • 8| Nucleotides and Nucleic Acids
    8| Nucleotides and Nucleic Acids © 2013 W. H. Freeman and Company CHAPTER 8 Nucleotides and Nucleic Acids Key topics: – Biological function of nucleotides and nucleic acids – Structures of common nucleotides – Structure of double‐stranded DNA – Structures of ribonucleic acids – Denaturation and annealing of DNA – Chemistry of nucleic acids; mutagenesis Functions of Nucleotides and Nucleic Acids • Nucleotide Functions: – Energy for metabolism (ATP) – Enzyme cofactors (NAD+) –Signal transduction (cAMP) • Nucleic Acid Functions: – Storage of genetic info (DNA) – Transmission of genetic info (mRNA) –Processing of genetic information (ribozymes) –Protein synthesis (tRNA and rRNA) Nucleotides and Nucleosides • Nucleotide = – Nitrogeneous base –Pentose – Phosphate • Nucleoside = – Nitrogeneous base –Pentose • Nucleobase = – Nitrogeneous base Phosphate Group •Negatively charged at neutral pH • Typically attached to 5’ position – Nucleic acids are built using 5’‐triphosphates •ATP, GTP, TTP, CTP – Nucleic acids contain one phosphate moiety per nucleotide •May be attached to other positions Other Nucleotides: Monophosphate Group in Different Positions Pentose in Nucleotides • ‐D‐ribofuranose in RNA • ‐2’‐deoxy‐D‐ribofuranose in DNA •Different puckered conformations of the sugar ring are possible Nucleobases •Derivatives of pyrimidine or purine • Nitrogen‐containing heteroaromatic molecules •Planar or almost planar structures •Absorb UV light around 250–270 nm Pyrimidine Bases • Cytosine is found in both DNA and RNA •Thymineis found only in DNA
    [Show full text]
  • Nucleotides and Nucleic Acids
    CHAPTER 8 Nucleotides and Nucleic Acids Functions of Nucleotides and Nucleic Acids • Nucleotide Functions: – Energy for metabolism (ATP) – Enzyme cofactors (NAD+) – Signal transduction (cAMP) • Nucleic Acid Functions: – Storage of genetic info (DNA) – Transmission of genetic info (mRNA) – Processing of genetic information (ribozymes) – Protein synthesis (tRNA and rRNA) Nucleotides and Nucleosides • Nucleotide = – Nitrogeneous base – Pentose – Phosphate • Nucleoside = – Nitrogeneous base – Pentose • Nucleobase = – Nitrogeneous base Phosphate Group • Negatively charged at neutral pH • Typically attached to 5’ position – Nucleic acids are built using 5’- triphosphates • ATP, GTP, TTP, CTP – Nucleic acids contain one phosphate moiety per nucleotide • May be attached to other positions Other Nucleotides: Monophosphate Group in Different Positions Pentose in Nucleotides • -D-ribofuranose in RNA • -2’-deoxy-D-ribofuranose in DNA • Different puckered conformations of the sugar ring are possible Purine Bases • Adenine and guanine are found in both RNA and DNA • Also good H-bond donors and acceptors • Adenine pKa at N1 is 3.8 • Guanine pKa at N7 is 2.4 • Neutral molecules at pH 7 • Derivatives of pyrimidine or purine • Nitrogen-containing heteroaromatic molecules • Planar or almost planar structures • Absorb UV light around 250–270 nm Pyrimidine Bases • Cytosine is found in both DNA and RNA • Thymine is found only in DNA • Uracil is found only in RNA • All are good H-bond donors and acceptors • Cytosine pKa at N3 is 4.5 • Thymine pKa at N3 is 9.5
    [Show full text]
  • Deoxyribose and Deoxysugar Derivatives from Photoprocessed Astrophysical Ice Analogues and Comparison to Meteorites
    ARTICLE https://doi.org/10.1038/s41467-018-07693-x OPEN Deoxyribose and deoxysugar derivatives from photoprocessed astrophysical ice analogues and comparison to meteorites Michel Nuevo 1,2, George Cooper3 & Scott A. Sandford 1 Sugars and their derivatives are essential to all terrestrial life. Their presence in meteorites, together with amino acids, nucleobases, amphiphiles, and other compounds of biological 1234567890():,; importance, may have contributed to the inventory of organics that played a role in the emergence of life on Earth. Sugars, including ribose (the sugar of RNA), and other sugar derivatives have been identified in laboratory experiments simulating photoprocessing of ices under astrophysical conditions. In this work, we report the detection of 2-deoxyribose (the sugar of DNA) and several deoxysugar derivatives in residues produced from the ultraviolet irradiation of ice mixtures consisting of H2O and CH3OH. The detection of deoxysugar derivatives adds to the inventory of compounds of biological interest that can form under astrophysical conditions and puts constraints on their abiotic formation pathway. Finally, we report that some of the deoxysugar derivatives found in our residues are also newly identified in carbonaceous meteorites. 1 NASA Ames Research Center, MS 245-6, Moffett Field, CA 94035, USA. 2 BAER Institute, NASA Research Park, MS 18-4, Moffett Field, CA 94035, USA. 3 NASA Ames Research Center, MS 239-4, Moffett Field, CA 94035, USA. Correspondence and requests for materials should be addressed to M.N. (email: [email protected]) NATURE COMMUNICATIONS | (2018) 9:5276 | https://doi.org/10.1038/s41467-018-07693-x | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | https://doi.org/10.1038/s41467-018-07693-x ugars (monosaccharides) and their derivatives are ubiqui- contamination.
    [Show full text]
  • Studies on the Prebiotic Origin of 2-Deoxy-D-Ribose
    Studies on the Prebiotic Origin of 2-Deoxy-D-ribose Andrew Mark Steer Doctor of Philosophy University of York Chemistry August 2017 Abstract DNA is an important biological structure necessary for cell proliferation. The origins of cell- like structures and the building blocks of DNA are therefore also of great concern. As of yet the prebiotic origin of 2-deoxy-D-ribose, the sugar of DNA, has no satisfactory explanation. This research attempts to provide a possible explanation to the chemical origin of 2-deoxy- D-ribose via an aldol reaction between acetaldehyde 1 and D-glyceraldehyde D-2 (Error! Reference source not found.). The sugar mixture is trapped with N,N-diphenylhydrazine 3 for ease of purification and characterisation. The reaction is promoted by amino acids, amino esters and amino nitriles consistently giving selectivities in favour of 2-deoxy-D- ribose. This is the first example of an amino nitrile promoted reaction. Potential prebiotic synthesis of 2-deoxy-D-ribose and subsequent trapping with N,N-diphenyl hydrazine 3. The research is developed further by exploring the formation of 2-deoxy-D-ribose in a “protocell” environment – a primitive cell. Here we suggest that primitive cells may have been simple hydrogel systems. A discussion of the characterisation and catalytic ability of small peptide-based supramolecular structures is included. ii Contents Abstract ............................................................................................................................ ii Contents .........................................................................................................................
    [Show full text]
  • Deoxyribose-5-Phosphate Aldolase As a Synthetic Catalyst'
    J. Am. Chem. SOC.1990, 112, 2013-2014 2013 chemical shift for the iminosilaacyl carbon at 6 299.07.3a3b Ad- Deoxyribose-5-phosphateAldolase as a Synthetic dition of 1 equiv of CN(XyI) to a benzene solution of 4, or reaction Catalyst' of 1 with 2 equiv of CN(Xyl), results in formation of a blue complex 5. The combustion analysis of isolated 5 is consistent Carlos F. Barbas, 111, Yi-Fong Wang, and Chi-Huey Wong* with a 1:2 adduct of 1 with isocyanide, Cp,Sc(CN(Xyl)),Si- (SiMe3)3. However, 'H NMR data for 5 indicate a complex Department of Chemistry structure and the presence of three inequivalent SiMe3 groups in The Research Institute of Scripps Clinic a 1 :1: 1 ratioss Formation of X-ray-quality, blue crystals from La Jolla, California 92037 diethvl ether allowed comdete characterization of this comwund. Received November 29, 1989 Tie crystal structure7'(Figure 1) shows that 5 is the pioduct of an isocyanide-coupling reaction that results in further rear- Enzyme-catalyzed stereocontrolled aldol condensations are rangements. The structure drawn in Scheme I reflects the ob- valuable in organic synthesis, particularly in the synthesis of served structural parameters. The chelate ring of 5 is derived from carbohydrates and related s~bstances?~~We report here an initial the two isoc anide groups and contains a Sc( 1)-N( 1) single bond study on the synthetic utility of a bacterial 2-deoxyribose-5- (2.133 (7) i),a longer (dative) Sc(l)-N(2) bond (2.324 (8) A), phosphate aldolase (DERA, EC 4.1.2.4) overexpressed in Es- and a C=C double bond (C(l)-C(2) = 1.375 (12) A).
    [Show full text]
  • Carbohydrates Hydrates of Carbon: General Formula Cn(H2O)N Plants
    Chapter 25: Carbohydrates hydrates of carbon: general formula Cn(H2O)n Plants: photosynthesis hν 6 CO2 + H2O C6H12O6 + 6 O2 Polymers: large molecules made up of repeating smaller units (monomer) Biopolymers: Monomer units: carbohydrates (chapter 25) monosaccharides peptides and proteins (chapter 26) amino acids nucleic acids (chapter 28) nucleotides 315 25.1 Classification of Carbohydrates: I. Number of carbohydrate units monosaccharides: one carbohydrate unit (simple carbohydrates) disaccharides: two carbohydrate units (complex carbohydrates) trisaccharides: three carbohydrate units polysaccharides: many carbohydrate units CHO H OH HO HO HO H HO HO O HO O glucose H OH HO HO OH HO H OH OH CH2OH HO HO HO O HO O HO HO O HO HO O HO HO HO O O O O O HO HO O HO HO HO O O HO HO HO galactose OH + glucose O glucose = lactose polymer = amylose or cellulose 316 160 II. Position of carbonyl group at C1, carbonyl is an aldehyde: aldose at any other carbon, carbonyl is a ketone: ketose III. Number of carbons three carbons: triose six carbons: hexose four carbons: tetrose seven carbons: heptose five carbons: pentose etc. IV. Cyclic form (chapter 25.5) CHO CHO CHO CHO CH2OH H OH HO H H OH H OH O CH2OH H OH H OH HO H HO H CH2OH H OH H OH H OH CH2OH H OH H OH CH OH 2 CH2OH glyceraldehyde threose ribose glucose fructose (triose) (tetrose) (pentose) (hexose) (hexose) 317 (aldohexose) (ketohexose) 25.2: Depicting carbohydrates stereochemistry: Fischer Projections: representation of a three-dimensional molecule as a flat structure.
    [Show full text]