Convergent Evolution
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Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B
Transformations of Lamarckism Vienna Series in Theoretical Biology Gerd B. M ü ller, G ü nter P. Wagner, and Werner Callebaut, editors The Evolution of Cognition , edited by Cecilia Heyes and Ludwig Huber, 2000 Origination of Organismal Form: Beyond the Gene in Development and Evolutionary Biology , edited by Gerd B. M ü ller and Stuart A. Newman, 2003 Environment, Development, and Evolution: Toward a Synthesis , edited by Brian K. Hall, Roy D. Pearson, and Gerd B. M ü ller, 2004 Evolution of Communication Systems: A Comparative Approach , edited by D. Kimbrough Oller and Ulrike Griebel, 2004 Modularity: Understanding the Development and Evolution of Natural Complex Systems , edited by Werner Callebaut and Diego Rasskin-Gutman, 2005 Compositional Evolution: The Impact of Sex, Symbiosis, and Modularity on the Gradualist Framework of Evolution , by Richard A. Watson, 2006 Biological Emergences: Evolution by Natural Experiment , by Robert G. B. Reid, 2007 Modeling Biology: Structure, Behaviors, Evolution , edited by Manfred D. Laubichler and Gerd B. M ü ller, 2007 Evolution of Communicative Flexibility: Complexity, Creativity, and Adaptability in Human and Animal Communication , edited by Kimbrough D. Oller and Ulrike Griebel, 2008 Functions in Biological and Artifi cial Worlds: Comparative Philosophical Perspectives , edited by Ulrich Krohs and Peter Kroes, 2009 Cognitive Biology: Evolutionary and Developmental Perspectives on Mind, Brain, and Behavior , edited by Luca Tommasi, Mary A. Peterson, and Lynn Nadel, 2009 Innovation in Cultural Systems: Contributions from Evolutionary Anthropology , edited by Michael J. O ’ Brien and Stephen J. Shennan, 2010 The Major Transitions in Evolution Revisited , edited by Brett Calcott and Kim Sterelny, 2011 Transformations of Lamarckism: From Subtle Fluids to Molecular Biology , edited by Snait B. -
Alfred Russel Wallace and the Darwinian Species Concept
Gayana 73(2): Suplemento, 2009 ISSN 0717-652X ALFRED RUSSEL WALLACE AND THE Darwinian SPECIES CONCEPT: HIS paper ON THE swallowtail BUTTERFLIES (PAPILIONIDAE) OF 1865 ALFRED RUSSEL WALLACE Y EL concepto darwiniano DE ESPECIE: SU TRABAJO DE 1865 SOBRE MARIPOSAS papilio (PAPILIONIDAE) Jam ES MA LLET 1 Galton Laboratory, Department of Biology, University College London, 4 Stephenson Way, London UK, NW1 2HE E-mail: [email protected] Abstract Soon after his return from the Malay Archipelago, Alfred Russel Wallace published one of his most significant papers. The paper used butterflies of the family Papilionidae as a model system for testing evolutionary hypotheses, and included a revision of the Papilionidae of the region, as well as the description of some 20 new species. Wallace argued that the Papilionidae were the most advanced butterflies, against some of his colleagues such as Bates and Trimen who had claimed that the Nymphalidae were more advanced because of their possession of vestigial forelegs. In a very important section, Wallace laid out what is perhaps the clearest Darwinist definition of the differences between species, geographic subspecies, and local ‘varieties.’ He also discussed the relationship of these taxonomic categories to what is now termed ‘reproductive isolation.’ While accepting reproductive isolation as a cause of species, he rejected it as a definition. Instead, species were recognized as forms that overlap spatially and lack intermediates. However, this morphological distinctness argument breaks down for discrete polymorphisms, and Wallace clearly emphasised the conspecificity of non-mimetic males and female Batesian mimetic morphs in Papilio polytes, and also in P. -
Evolution by Natural Selection, Formulated Independently by Charles Darwin and Alfred Russel Wallace
UNIT 4 EVOLUTIONARY PATT EVOLUTIONARY E RNS AND PROC E SS E Evolution by Natural S 22 Selection Natural selection In this chapter you will learn that explains how Evolution is one of the most populations become important ideas in modern biology well suited to their environments over time. The shape and by reviewing by asking by applying coloration of leafy sea The rise of What is the evidence for evolution? Evolution in action: dragons (a fish closely evolutionary thought two case studies related to seahorses) 22.1 22.4 are heritable traits that with regard to help them to hide from predators. The pattern of evolution: The process of species have changed evolution by natural and are related 22.2 selection 22.3 keeping in mind Common myths about natural selection and adaptation 22.5 his chapter is about one of the great ideas in science: the theory of evolution by natural selection, formulated independently by Charles Darwin and Alfred Russel Wallace. The theory explains how T populations—individuals of the same species that live in the same area at the same time—have come to be adapted to environments ranging from arctic tundra to tropical wet forest. It revealed one of the five key attributes of life: Populations of organisms evolve. In other words, the heritable characteris- This chapter is part of the tics of populations change over time (Chapter 1). Big Picture. See how on Evolution by natural selection is one of the best supported and most important theories in the history pages 516–517. of scientific research. -
Many but Not All Lineage-Specific Genes Can Be Explained by Homology Detection Failure
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.27.968420; this version posted April 14, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Many but not all lineage-specific genes can be explained by homology detection failure Caroline M. Weisman1, Andrew W. Murray1, Sean R. Eddy1,2,3 1 Department of Molecular & Cellular Biology, 2 Howard Hughes Medical Institute, 3 John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge MA, USA Abstract Genes for which homologs can be detected only in a limited group of evolutionarily related species, called “lineage-specific genes,” are pervasive: essentially every lineage has them, and they often comprise a sizable fraction of the group’s total genes. Lineage-specific genes are often interpreted as “novel” genes, representing genetic novelty born anew within that lineage. Here, we develop a simple method to test an alternative null hypothesis: that lineage-specific genes do have homologs outside of the lineage that, even while evolving at a constant rate in a novelty-free manner, have merely become undetectable by search algorithms used to infer homology. We show that this null hypothesis is sufficient to explain the lack of detected homologs of a large number of lineage-specific genes in fungi and insects. However, we also find that a minority of lineage-specific genes in both clades are not well-explained by this novelty- free model. -
Evolution Activity, Grade 11
Evolution Activity, Grade 11 Evolution Activities for Grade 11 Students at the Toronto Zoo 1 Evolution Activity, Grade 11 Table of Contents Pre-Zoo Activity 3-8 • Think, Pair, Share – Animals in Society and Role of Zoos 3-5 o Description 3 o Materials 3 o Four Corners Activity 6 o Background Information 7-8 Zoo Activity 9-19 • Teacher’s Notes 9-13 o General Information, Curriculum expectations, 9-10 materials, procedure o Evaluation Rubrics 11-12 o Glossary 13 • Student Assignment 14-19 o Part 1 – Mission Preparation at the Zoo 15-16 (Observation Sheets) o Part 2 – Scientific Notes 17 o Part 3 – Documentation: The Story 18 o Appendix – Animal signs 19 Evaluation 20 2 Evolution Activity, Grade 11 Suggested Pre-zoo activity Time needed : 35 minutes (or more) Type of activity : pair-share, small-group (approximately 2-3 students) Objective : encourage students to think about and evaluate the roles of animals in our society and the purposes of zoos along with their own attitudes or stands toward zoos Materials needed : a set of 8-16 statements and a mode of ranking (either above the line-below the line or diamond style ranking system) Special note : In order to manage time, teacher can chose to use any number of the statements as long as the 4 core statements listed bellow are included. Task : students work together to rank the statements about the treatment of animals. They should work together and try to negotiate a consensus, but if this is impossible they can either leave out the particular statement or write down a few lines in their notes as to why they would place them in a different category. -
Countershading in Zebrafish Results from an Asip1 Controlled
www.nature.com/scientificreports OPEN Countershading in zebrafsh results from an Asip1 controlled dorsoventral gradient of pigment Received: 1 October 2018 Accepted: 12 February 2019 cell diferentiation Published: xx xx xxxx Laura Cal1, Paula Suarez-Bregua1, Pilar Comesaña1, Jennifer Owen2, Ingo Braasch3, Robert Kelsh 2, José Miguel Cerdá-Reverter4 & Josep Rotllant1 Dorso-ventral (DV) countershading is a highly-conserved pigmentary adaptation in vertebrates. In mammals, spatially regulated expression of agouti-signaling protein (ASIP) generates the diference in shading by driving a switch between the production of chemically-distinct melanins in melanocytes in dorsal and ventral regions. In contrast, fsh countershading seemed to result from a patterned DV distribution of diferently-coloured cell-types (chromatophores). Despite the cellular diferences in the basis for counter-shading, previous observations suggested that Agouti signaling likely played a role in this patterning process in fsh. To test the hypotheses that Agouti regulated counter-shading in fsh, and that this depended upon spatial regulation of the numbers of each chromatophore type, we engineered asip1 homozygous knockout mutant zebrafsh. We show that loss-of-function asip1 mutants lose DV countershading, and that this results from changed numbers of multiple pigment cell-types in the skin and on scales. Our fndings identify asip1 as key in the establishment of DV countershading in fsh, but show that the cellular mechanism for translating a conserved signaling gradient into a conserved pigmentary phenotype has been radically altered in the course of evolution. Most vertebrates exhibit a dorso-ventral pigment pattern characterized by a light ventrum and darkly colored dorsal regions. Tis countershading confers UV protection against solar radiation, but also is proposed to pro- vide anti-predator cryptic pigmentation. -
Convergent Evolution of Seasonal Camouflage in Response to Reduced Snow Cover Across the Snowshoe Hare Range
ORIGINAL ARTICLE doi:10.1111/evo.13976 Convergent evolution of seasonal camouflage in response to reduced snow cover across the snowshoe hare range Matthew R. Jones,1,2 L. Scott Mills,3,4 Jeffrey D. Jensen,5 and Jeffrey M. Good1,3,6 1Division of Biological Sciences, University of Montana, Missoula, Montana 59812 2E-mail: [email protected] 3Wildlife Biology Program, University of Montana, Missoula, Montana 59812 4Office of Research and Creative Scholarship, University of Montana, Missoula, Montana 59812 5School of Life Sciences, Arizona State University, Tempe, Arizona 85281 6E-mail: [email protected] Received January 22, 2020 Accepted April 2, 2020 Determining how different populations adapt to similar environments is fundamental to understanding the limits of adaptation under changing environments. Snowshoe hares (Lepus americanus) typically molt into white winter coats to remain camouflaged against snow. In some warmer climates, hares have evolved brown winter camouflage—an adaptation that may spread in re- sponse to climate change. We used extensive range-wide genomic data to (1) resolve broad patterns of population structure and gene flow and (2) investigate the factors shaping the origins and distribution of winter-brown camouflage variation. Incoastal Pacific Northwest (PNW) populations, winter-brown camouflage is known to be determined by a recessive haplotype atthe Agouti pigmentation gene. Our phylogeographic analyses revealed deep structure and limited gene flow between PNW and more north- ern Boreal populations, where winter-brown camouflage is rare along the range edge. Genome sequencing of a winter-brown snowshoe hare from Alaska shows that it lacks the winter-brown PNW haplotype, reflecting a history of convergent phenotypic evolution. -
The Molecular Basis of Phenotypic Convergence
ES45CH10-Rosenblum ARI 15 October 2014 11:31 The Molecular Basis of Phenotypic Convergence Erica Bree Rosenblum,1 Christine E. Parent,1,2 and Erin E. Brandt1 1Department of Environmental Science, Policy, and Management, University of California, Berkeley, California 94720; email: [email protected], [email protected] 2Department of Biological Sciences, University of Idaho, Moscow, Idaho 83844; email: [email protected] Annu. Rev. Ecol. Evol. Syst. 2014. 45:203–26 Keywords First published online as a Review in Advance on convergent evolution, parallelism, genetics, nonmodel species September 29, 2014 The Annual Review of Ecology, Evolution, and Abstract Systematics is online at ecolsys.annualreviews.org Understanding what aspects of evolution are predictable, and repeatable, is a This article’s doi: central goal of biology. Studying phenotypic convergence (the independent 10.1146/annurev-ecolsys-120213-091851 evolution of similar traits in different organisms) provides an opportunity to Copyright c 2014 by Annual Reviews. address evolutionary predictability at different hierarchical levels. Here we All rights reserved focus on recent advances in understanding the molecular basis of conver- Annu. Rev. Ecol. Evol. Syst. 2014.45:203-226. Downloaded from www.annualreviews.org Access provided by University of California - Berkeley on 01/30/15. For personal use only. gence. Understanding when, and why, similar molecular solutions are used repeatedly provides insight into the constraints that shape biological diver- sity. We first distinguish between convergence as a phenotypic pattern and parallelism as a shared molecular basis for convergence. We then address the overarching question: What factors influence when parallel molecular mechanisms will underlie phenotypic convergence? We present four core determinants of convergence (natural selection, phylogenetic history, pop- ulation demography, and genetic constraints) and explore specific factors that influence the probability of molecular parallelism. -
(Non)Parallel Evolution 3 4 Daniel I. Bolnick1,2*, Rowan Barrett3, Krista
1 2 3 (Non)Parallel Evolution 4 5 Daniel I. Bolnick1,2*, Rowan Barrett3, Krista Oke3,4 , Diana J. Rennison5 , Yoel E. Stuart1 6 7 1 Department of Integrative Biology, University of Texas at Austin, Austin TX 78712, USA; 8 [email protected]; [email protected] 9 2 Department of Ecology and Evolution, University of Connecticut, Storrs CT 06268, USA (as of 10 07/2018) 11 3 Redpath Museum, McGill University, Montreal, Quebec, Canada; [email protected] 12 4 Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa 13 Cruz, CA, 95060, USA; [email protected] 14 5 Institute of Ecology and Evolution, University of Bern, 3012 Bern, Switzerland; 15 [email protected] 16 17 * Corresponding author: Email: [email protected] Telephone: +011 (512) 471-2824 18 19 20 Running title: “(Non)Parallel Evolution” 21 22 1 23 Abstract 24 Parallel evolution across replicate populations has provided evolutionary biologists with iconic 25 examples of adaptation. When multiple populations colonize seemingly similar habitats, they 26 may evolve similar genes, traits, or functions. Yet, replicated evolution in nature or in the lab 27 often yields inconsistent outcomes: some replicate populations evolve along highly similar 28 trajectories, whereas other replicate populations evolve to different extents or in atypical 29 directions. To understand these heterogeneous outcomes, biologists are increasingly treating 30 parallel evolution not as a binary phenomenon but rather as a quantitative continuum ranging 31 from nonparallel to parallel. By measuring replicate populations’ positions along this 32 “(non)parallel” continuum, we can test hypotheses about evolutionary and ecological factors that 33 influence the likelihood of repeatable evolution. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
The Genetic Causes of Convergent Evolution
Nature Reviews Genetics | AOP, published online 9 October 2013; doi:10.1038/nrg3483 REVIEWS The genetic causes of convergent evolution David L. Stern Abstract | The evolution of phenotypic similarities between species, known as convergence, illustrates that populations can respond predictably to ecological challenges. Convergence often results from similar genetic changes, which can emerge in two ways: the evolution of similar or identical mutations in independent lineages, which is termed parallel evolution; and the evolution in independent lineages of alleles that are shared among populations, which I call collateral genetic evolution. Evidence for parallel and collateral evolution has been found in many taxa, and an emerging hypothesis is that they result from the fact that mutations in some genetic targets minimize pleiotropic effects while simultaneously maximizing adaptation. If this proves correct, then the molecular changes underlying adaptation might be more predictable than has been appreciated previously. (FIG. 1) Fitness Different species often evolve similar solutions to envi introgression . It is worth distinguishing between The potential evolutionary ronmental challenges. Insects, birds and bats evo these scenarios because each provides evidence for a dif success of a genotype, defined lved wings, and octopi, vertebrates and spiders ferent evolutionary path3. The first case, the independent as the reproductive success or evolved focusing eyes. Phenotypic convergence provides origin and spread of mutations, has been called parallel the proportion of genes that an individual leaves in the gene compelling evidence that ecological circumstances can genetic evolution. I suggest that the evolution of alleles 1,2 pool of the next generation in a select for similar evolutionary solutions . -
SARS-Cov-2 Convergent Evolution As a Guide to Explore Adaptive Advantage
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.24.445534; this version posted May 25, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. SARS-CoV-2 convergent evolution as a guide to explore adaptive advantage Jiří Zahradník1, Jaroslav Nunvar2,3, and Gideon Schreiber1* 1 Department of Biomolecular Sciences, Weizmann Institute of Science, Rehovot 7610001, Israel 2 Department of Genetics and Microbiology, Faculty of Science, Charles University, Prague 12844, Czech Republic 3 BIOCEV - Biotechnology and Biomedicine Centre of the Academy of Sciences and Charles University, Vestec 25250, Czech Republic * Corresponding author email: [email protected] Author Contributions: Author contributions: J.Z. and G.S. conceived the project; J.Z., J.N. and G.S. performed experiments; J.Z., J.N. and G.S. wrote the manuscript. Competing Interest Statement: Authors declare no competing interests. Keywords: SARS-CoV-2, Convergent Evolution, Mutations bioRxiv preprint doi: https://doi.org/10.1101/2021.05.24.445534; this version posted May 25, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Much can be learned from 1.2 million sequences of SARS-CoV-2 generated during the last 15 months. Out of the overwhelming number of mutations sampled so far, only few rose to prominence in the viral population. Many of these emerged recently and independently in multiple lineages. Such a textbook example of convergent evolution at the molecular level is not only curiosity but a guide to uncover the basis for adaptive advantage behind these events.