Distinct Effects of Host and Neighbour Tree Identity on Arbuscular and Ectomycorrhizal Fungi Along a Tree Diversity Gradient
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Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Notes on Ascomycetes 11: Discomycetes
ACTA BOT. ISL. 10: 31-36, 1990. Notes on Ascomycetes 11: Discomycetes Helgi Hallgrfmsson and Henrik F. G~tzsche Lagarasi 2, 700 Egilsstaoir, Iceland and Institut for Sporeplanter, 0ster-Farirnagsgade 2D, 1353 Copenhagen K, Denmark ABSTRACT: Sixteen species of, Helotiales and Pezizales (Discomy cetes) are recorded, whereof 9 species are new to the Icelandic flora: Lachnellula suecica. Ciboria polygoni, Peziza cf. cerea, Peziza fimeti. Peziza granulosa. Geopora sp.. Melastiza eha teri, Otide8 cf. alutacea and T8rzetta spurcata. HELOTIALES Helotiaceae ASCOCORYNE SARCOIDES (Jacq.) Groves & Wils. The species was reported by ROSTRUP (1903, p.313) under the name Coryne sarcoides (Jacq.) Tul., from Halssk6gur in N-Ice land, based on a specimen collected by 6lafur Daviosson. It has been found many times in the Public Park in Akureyri (AMNH 199, 9958), growing on stumps of different trees, mainly Betula and Sorbus spp., also in Arnarh6ll near Akureyri, in a garden. In SW-Iceland it has been found by Eirikur Jensson in Fossvogur 1988, and in Vifilsstaoahlio near Hafnarfjorour 1978. In the East it has been collected in the forests of Egilsstaoir and Hallormsstaour in 1987-1988 (AMNH 11642, 11856). The growing season is from late August to October. Since the species is rarely found in the ascus-state, it can not be ascertained whether A. cylichnum might also be present in the material or not. Hyaloscyphaceae HYMENOSCYPHUS cf. CALYCULUS (Sow.) Phill. The species was reported by ROSTRUP (1903, p. 315) as Phialea virgultorum (Vahl.) Sacc., from Halssk6gur and Horgar- 32 ACTA BOTANICA ISLANDICA NO. 10 dalur, N. -Iceland, collected by 6lafur Daviosson on branches of Betula pubescens and Salix lanata. -
Complete References List
Aanen, D. K. & T. W. Kuyper (1999). Intercompatibility tests in the Hebeloma crustuliniforme complex in northwestern Europe. Mycologia 91: 783-795. Aanen, D. K., T. W. Kuyper, T. Boekhout & R. F. Hoekstra (2000). Phylogenetic relationships in the genus Hebeloma based on ITS1 and 2 sequences, with special emphasis on the Hebeloma crustuliniforme complex. Mycologia 92: 269-281. Aanen, D. K. & T. W. Kuyper (2004). A comparison of the application of a biological and phenetic species concept in the Hebeloma crustuliniforme complex within a phylogenetic framework. Persoonia 18: 285-316. Abbott, S. O. & Currah, R. S. (1997). The Helvellaceae: Systematic revision and occurrence in northern and northwestern North America. Mycotaxon 62: 1-125. Abesha, E., G. Caetano-Anollés & K. Høiland (2003). Population genetics and spatial structure of the fairy ring fungus Marasmius oreades in a Norwegian sand dune ecosystem. Mycologia 95: 1021-1031. Abraham, S. P. & A. R. Loeblich III (1995). Gymnopilus palmicola a lignicolous Basidiomycete, growing on the adventitious roots of the palm sabal palmetto in Texas. Principes 39: 84-88. Abrar, S., S. Swapna & M. Krishnappa (2012). Development and morphology of Lysurus cruciatus--an addition to the Indian mycobiota. Mycotaxon 122: 217-282. Accioly, T., R. H. S. F. Cruz, N. M. Assis, N. K. Ishikawa, K. Hosaka, M. P. Martín & I. G. Baseia (2018). Amazonian bird's nest fungi (Basidiomycota): Current knowledge and novelties on Cyathus species. Mycoscience 59: 331-342. Acharya, K., P. Pradhan, N. Chakraborty, A. K. Dutta, S. Saha, S. Sarkar & S. Giri (2010). Two species of Lysurus Fr.: addition to the macrofungi of West Bengal. -
Supporting References for Nelson & Ellis
Supplemental Data for Nelson & Ellis (2018) The citations below were used to create Figures 1 & 2 in Nelson, G., & Ellis, S. (2018). The History and Impact of Digitization and Digital Data Mobilization on Biodiversity Research. Publication title by year, author (at least one ADBC funded author or not), and data portal used. This list includes papers that cite the ADBC program, iDigBio, TCNs/PENs, or any of the data portals that received ADBC funds at some point. Publications were coded as "referencing" ADBC if the authors did not use portal data or resources; it includes publications where data was deposited or archived in the portal as well as those that mention ADBC initiatives. Scroll to the bottom of the document for a key regarding authors (e.g., TCNs) and portals. Citation Year Author Portal used Portal or ADBC Program was referenced, but data from the portal not used Acevedo-Charry, O. A., & Coral-Jaramillo, B. (2017). Annotations on the 2017 Other Vertnet; distribution of Doliornis remseni (Cotingidae ) and Buthraupis macaulaylibrary wetmorei (Thraupidae ). Colombian Ornithology, 16, eNB04-1 http://asociacioncolombianadeornitologia.org/wp- content/uploads/2017/11/1412.pdf [Accessed 4 Apr. 2018] Adams, A. J., Pessier, A. P., & Briggs, C. J. (2017). Rapid extirpation of a 2017 Other VertNet North American frog coincides with an increase in fungal pathogen prevalence: Historical analysis and implications for reintroduction. Ecology and Evolution, 7, (23), 10216-10232. Adams, R. P. (2017). Multiple evidences of past evolution are hidden in 2017 Other SEINet nrDNA of Juniperus arizonica and J. coahuilensis populations in the trans-Pecos, Texas region. -
Two New Genus Records for Turkish Mycota
MYCOTAXON Volume 111, pp. 477–480 January–March 2010 Two new genus records for Turkish mycota Yusuf Uzun1, Kenan Demirel1, Abdullah Kaya2* & Fahrettin Gücin3 *[email protected] 1Yüzüncü Yıl University, Science & Arts Faculty TR 65080, Van Turkey 2Adıyaman University, Education Faculty TR 02040, Adıyaman Turkey 3Fatih University Science & Arts Faculty TR 34500, Istanbul Turkey Abstract — The genera Geopyxis (Pyronemataceae) and Asterophora (Lyophyllaceae) are recorded from Turkey for the first time, based on collections of Geopyxis carbonaria and Asterophora lycoperdoides. Short descriptions and photographs of the taxa are provided. Key words —Ascomycota, Basidiomycota, biodiversity, macrofungi Introduction Geopyxis carbonaria (Pyronemataceae) is an abundant post-fire discomycete in coniferous forests. This fleshy mushroom has a complex life cycle and is mycorrhizal on deep roots of members of the Pinaceae, and fruits only when the trees die (Vrålstad et al. 1998). Since it often fruits prolifically after wildfires, it has also been considered to be a possible indicator of imminent morel fruiting (Obst & Brown 2000). Asterophora lycoperdoides (Lyophyllaceae) is a relatively rare basidiomycete that parasitizes other mushrooms in the family Russulaceae, especially Russula nigricans and Russula densifolia. It usually fruits after the host has blackened and begun to decay (Kuo 2006). The fungus generally reproduces asexually by brown powdery chlamydospores formed on the cap surface; its gills, which are often absent or deformed, produce sexual basidiospores only infrequently (Roody 2003). According to checklists (Sesli & Denchev 2009) and recently published data (Solak et al. 2009, Kaya 2009), neither of the above taxa have previously been recorded from Turkey. The study aims to contribute to the macromycota of Turkey. -
A Monograph of Otidea (Pyronemataceae, Pezizomycetes)
Persoonia 35, 2015: 166–229 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X688000 A monograph of Otidea (Pyronemataceae, Pezizomycetes) I. Olariaga1, N. Van Vooren2, M. Carbone3, K. Hansen1 Key words Abstract The easily recognised genus Otidea is subjected to numerous problems in species identification. A number of old names have undergone various interpretations, materials from different continents have not been compared and Flavoscypha misidentifications occur commonly. In this context, Otidea is monographed, based on our multiple gene phylogenies ITS assessing species boundaries and comparative morphological characters (see Hansen & Olariaga 2015). All names ITS1 minisatellites combined in or synonymised with Otidea are dealt with. Thirty-three species are treated, with full descriptions and LSU colour illustrations provided for 25 of these. Five new species are described, viz. O. borealis, O. brunneo parva, O. ore- Otideopsis gonensis, O. pseudoleporina and O. subformicarum. Otidea cantharella var. minor and O. onotica var. brevispora resinous exudates are elevated to species rank. Otideopsis kaushalii is combined in the genus Otidea. A key to the species of Otidea is given. An LSU dataset containing 167 sequences (with 44 newly generated in this study) is analysed to place collections and determine whether the named Otidea sequences in GenBank were identified correctly. Fourty-nine new ITS sequences were generated in this study. The ITS region is too variable to align across Otidea, but had low intraspecific variation and it aided in species identifications. Thirty type collections were studied, and ITS and LSU sequences are provided for 12 of these. A neotype is designated for O. -
Truffle Trouble: What Happened to the Tuberales?
mycological research 111 (2007) 1075–1099 journal homepage: www.elsevier.com/locate/mycres Truffle trouble: what happened to the Tuberales? Thomas LÆSSØEa,*, Karen HANSENb,y aDepartment of Biology, Copenhagen University, DK-1353 Copenhagen K, Denmark bHarvard University Herbaria – Farlow Herbarium of Cryptogamic Botany, Cambridge, MA 02138, USA article info abstract Article history: An overview of truffles (now considered to belong in the Pezizales, but formerly treated in Received 10 February 2006 the Tuberales) is presented, including a discussion on morphological and biological traits Received in revised form characterizing this form group. Accepted genera are listed and discussed according to a sys- 27 April 2007 tem based on molecular results combined with morphological characters. Phylogenetic Accepted 9 August 2007 analyses of LSU rDNA sequences from 55 hypogeous and 139 epigeous taxa of Pezizales Published online 25 August 2007 were performed to examine their relationships. Parsimony, ML, and Bayesian analyses of Corresponding Editor: Scott LaGreca these sequences indicate that the truffles studied represent at least 15 independent line- ages within the Pezizales. Sequences from hypogeous representatives referred to the fol- Keywords: lowing families and genera were analysed: Discinaceae–Morchellaceae (Fischerula, Hydnotrya, Ascomycota Leucangium), Helvellaceae (Balsamia and Barssia), Pezizaceae (Amylascus, Cazia, Eremiomyces, Helvellaceae Hydnotryopsis, Kaliharituber, Mattirolomyces, Pachyphloeus, Peziza, Ruhlandiella, Stephensia, Hypogeous Terfezia, and Tirmania), Pyronemataceae (Genea, Geopora, Paurocotylis, and Stephensia) and Pezizaceae Tuberaceae (Choiromyces, Dingleya, Labyrinthomyces, Reddellomyces, and Tuber). The different Pezizales types of hypogeous ascomata were found within most major evolutionary lines often nest- Pyronemataceae ing close to apothecial species. Although the Pezizaceae traditionally have been defined mainly on the presence of amyloid reactions of the ascus wall several truffles appear to have lost this character. -
New Records of Cup-Fungi from Iceland with Comments on Some Previously Reported Species
Nordic Journal of Botany 25: 104Á112, 2007 doi: 10.1111/j.2007.0107-055X.00094.x, # The Authors. Journal compilation # Nordic Journal of Botany 2007 Subject Editor: Torbjo¨rn Tyler. Accepted 10 September 2007 New records of cup-fungi from Iceland with comments on some previously reported species Donald H. Pfister and Guðrı´ður Gyða Eyjo´lfsdo´ttir D. H. Pfister ([email protected]), Harvard Univ. Herbaria, 22 Divinity Avenue, Cambridge, MA 02138, USA. Á Guðrı´ður Gyða Eyjo´lfsdo´ttir, Icelandic Inst. of Nat. History, Akureyri Div., Borgir at Norðurslo´ð, PO Box 180, ISÁ602, Akureyri, Iceland. Twelve species of cup-fungi in the orders Pezizales and Helotiales are reported for the first time from Iceland and comments are made on eight species previously reported. Distributions and habitats are noted. Newly reported records of species occurrences are as follows: Ascocoryne cylichnium, Gloeotinia granigena, Melastiza flavorubens, Octospora melina, O. leucoloma, Ombrophila violacea, Peziza apiculata sensu lato, P. phyllogena, P. succosa, Pseudombrophila theioleuca, Ramsbottomia macracantha and Tarzetta cupularis. Recent work allows the re-identification of Peziza granulosa as P. fimeti. The microfungi of Iceland has been most recently use patterns are documented. Studies of the diversity and summarized by Hallgrı´msson and Eyjo´lfsdo´ttir (2004). distribution of fungi in Iceland are thus delimited by The present authors collaborated in undertaking field and perhaps fewer variables than in areas of higher plant herbarium studies in 2004 focusing particularly on the diversity. cup-fungi in the orders Pezizales and Helotiales. This The interaction of these fungi with vascular plants study has resulted in several new records of these fungi for is of particular interest in light of investigations on Iceland and it helps to stabilize some of the names in the mycorrhizal associations formed by members of the current use. -
High Diversity and Widespread Occurrence of Mitotic Spore Mats in Ectomycorrhizal Pezizales
Molecular Ecology (2013) 22, 1717–1732 doi: 10.1111/mec.12135 High diversity and widespread occurrence of mitotic spore mats in ectomycorrhizal Pezizales R. A. HEALY,* M. E. SMITH,† G. M. BONITO,‡ D. H. PFISTER,§ Z. -W. GE,†¶ G. G. GUEVARA,** G. WILLIAMS,‡ K. STAFFORD,‡ L. KUMAR,* T. LEE,* C. HOBART,†† J. TRAPPE,‡‡ R. VILGALYS‡ and D. J. MCLAUGHLIN* *Department of Plant Biology, University of Minnesota, St. Paul, MN 55108, USA, †Department of Plant Pathology, University of Florida, Gainesville, FL 32611-0680, USA, ‡Department of Biology, Duke University, Durham, NC 27708, USA, §Farlow Herbarium of Cryptogamic Botany, Harvard University, Cambridge, MA 02143, USA, ¶Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650204, China, **Instituto Tecnologico de Cd. Victoria, Tamaulipas 87010, Mexico, ††University of Sheffield, Sheffield, UK, ‡‡Department of Forest Ecosystems and Society, Oregon State University, Corvalis 97331-2106, OR, USA Abstract Fungal mitospores may function as dispersal units and/ or spermatia and thus play a role in distribution and/or mating of species that produce them. Mitospore production in ectomycorrhizal (EcM) Pezizales is rarely reported, but here we document mitospore production by a high diversity of EcM Pezizales on three continents, in both hemi- spheres. We sequenced the internal transcribed spacer (ITS) and partial large subunit (LSU) nuclear rDNA from 292 spore mats (visible mitospore clumps) collected in Argentina, Chile, China, Mexico and the USA between 2009 and 2012. We collated spore mat ITS sequences with 105 fruit body and 47 EcM root sequences to generate operational taxonomic units (OTUs). Phylogenetic inferences were made through anal- yses of both molecular data sets. -
Tarzetta Catinus
© Demetrio Merino Alcántara [email protected] Condiciones de uso Tarzetta catinus (Holmsk.) Korf & J.K. Rogers, Phytologia 21(4): 206 (1971) Pyronemataceae, Pezizales, Pezizomycetidae, Pezizomycetes, Pezizomycotina, Ascomycota, Fungi = Acetabula albida (Gillet) Sacc., Syll. fung. (Abellini) 8: 61 (1889) = Aleuria albida Gillet, Champignons de France, Discom.(2): 36 (1879) ≡ Aleuria catinus (Holmsk.) Gillet, Champignons de France, Discom.(2): 39 (1879) = Galactinia pustulata (Hedw.) Boud., Hist. Class. Discom. Eur. (Paris): 48 (1907) = Galactinia pustulata var. fuckelii (Sacc.) Boud., Hist. Class. Discom. Eur. (Paris): 48 (1907) = Galactinia pustulata (Hedw.) Boud., Hist. Class. Discom. Eur. (Paris): 48 (1907) var. pustulata = Galactinia pustulata var. rehmii (Sacc.) Boud., Hist. Class. Discom. Eur. (Paris): 48 (1907) = Geopyxis albida (Gillet) Massee, Naturalist: 187 (1901) ≡ Geopyxis catinus (Holmsk.) Sacc., Syll. fung. (Abellini) 8: 71 (1889) ≡ Geopyxis catinus (Holmsk.) Sacc., Syll. fung. (Abellini) 8: 71 (1889) var. catinus = Geopyxis catinus var. microspora Keissl., Beih. bot. Zbl., Abt. 2 38(3): 416 (1921) = Geopyxis ochracea (Boud.) Bánhegyi, Borbásia 3: 3 (1941) = Octospora pustulata Hedw., Descr. micr.-anal. musc. frond. 2: 19, tab. 6A, figs. 1-4 (1789) ≡ Peziza catinus Holmsk., Beata Ruris Otia FUNGIS DANICIS 2: 22 (1799) = Peziza ochracea Boud., in Cooke, Mycogr., Vol. 1. Discom. (London): fig. 377 (1875) = Peziza pustulata (Hedw.) Pers., Syn. meth. fung. (Göttingen) 2: 646 (1801) = Peziza pustulata var. fuckelii Sacc. = Peziza pustulata (Hedw.) Pers., Syn. meth. fung. (Göttingen) 2: 646 (1801) var. pustulata = Peziza pustulata var. rehmii Sacc., Syll. fung. (Abellini) 8: 85 (1889) ≡ Peziza sphacelata subsp. catinus (Holmsk.) Pers., Mycol. eur. (Erlanga) 1: 231 (1822) ≡ Pustularia catinus (Holmsk.) Fuckel, Jb. nassau. Ver. -
Pezizomycetes, Ascomycota) Clarifies Relationships and Evolution of Selected Life History Traits ⇑ Karen Hansen , Brian A
Molecular Phylogenetics and Evolution 67 (2013) 311–335 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A phylogeny of the highly diverse cup-fungus family Pyronemataceae (Pezizomycetes, Ascomycota) clarifies relationships and evolution of selected life history traits ⇑ Karen Hansen , Brian A. Perry 1, Andrew W. Dranginis, Donald H. Pfister Department of Organismic and Evolutionary Biology, Harvard University, 22 Divinity Ave., Cambridge, MA 02138, USA article info abstract Article history: Pyronemataceae is the largest and most heterogeneous family of Pezizomycetes. It is morphologically and Received 26 April 2012 ecologically highly diverse, comprising saprobic, ectomycorrhizal, bryosymbiotic and parasitic species, Revised 24 January 2013 occurring in a broad range of habitats (on soil, burnt ground, debris, wood, dung and inside living bryo- Accepted 29 January 2013 phytes, plants and lichens). To assess the monophyly of Pyronemataceae and provide a phylogenetic Available online 9 February 2013 hypothesis of the group, we compiled a four-gene dataset including one nuclear ribosomal and three pro- tein-coding genes for 132 distinct Pezizomycetes species (4437 nucleotides with all markers available for Keywords: 80% of the total 142 included taxa). This is the most comprehensive molecular phylogeny of Pyronemata- Ancestral state reconstruction ceae, and Pezizomycetes, to date. Three hundred ninety-four new sequences were generated during this Plotting SIMMAP results Introns project, with the following numbers for each gene: RPB1 (124), RPB2 (99), EF-1a (120) and LSU rDNA Carotenoids (51). The dataset includes 93 unique species from 40 genera of Pyronemataceae, and 34 species from 25 Ectomycorrhizae genera representing an additional 12 families of the class.