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Icvg 2009 Part I Pp 1-131.Pdf
16th Meeting of the International Council for the Study of Virus and Virus-like Diseases of the Grapevine (ICVG XVI) 31 August - 4 September 2009 Dijon, France Extended Abstracts Le Progrès Agricole et Viticole - ISSN 0369-8173 Modifications in the layout of abstracts received from authors have been made to fit with the publication format of Le Progrès Agricole et Viticole. We apologize for errors that could have arisen during the editing process despite our careful vigilance. Acknowledgements Cover page : Olivier Jacquet Photos : Gérard Simonin Jean Le Maguet ICVG Steering Committee ICVG XVI Organising committee Giovanni, P. MARTELLI, chairman (I) Elisabeth BOUDON-PADIEU (INRA) Paul GUGERLI, secretary (CH) Silvio GIANINAZZI (INRA - CNRS) Giuseppe BELLI (I) Jocelyne PÉRARD (Chaire UNESCO Culture et Johan T. BURGER (RSA) Traditions du Vin, Univ Bourgogne) Marc FUCHS (F – USA) Olivier JACQUET (Chaire UNESCO Culture et Deborah A. GOLINO (USA) Traditions du Vin, Univ Bourgogne) Raymond JOHNSON (CA) Pascale SEDDAS (INRA) Michael MAIXNER (D) Sandrine ROUSSEAUX (Institut Jules Guyot, Univ Gustavo NOLASCO (P) Bourgogne) Denis CLAIR (INRA) Ali REZAIAN (USA) Dominique MILLOT (INRA) Iannis C. RUMBOS (G) Xavier DAIRE (INRA – CRECEP) Oscar A. De SEQUEIRA (P) Mary Jo FARMER (INRA) Edna TANNE (IL) Caroline CHATILLON (SEDIAG) Etienne HERRBACH (INRA Colmar) René BOVEY, Honorary secretary Jean Le MAGUET (INRA Colmar) Honorary committee members Session convenors A. CAUDWELL (F) D. GONSALVES (USA) Michael MAIXNER H.-H. KASSEMEYER (D) Olivier LEMAIRE G. KRIEL (RSA) Etienne HERRBACH D. STELLMACH, (D) Élisabeth BOUDON-PADIEU A. TELIZ, (Mex) Sandrine ROUSSEAUX A. VUITTENEZ (F) Pascale SEDDAS B. WALTER (F). Invited speakers to ICVG XVI Giovanni P. -
Grapevine Virus Diseases: Economic Impact and Current Advances in Viral Prospection and Management1
1/22 ISSN 0100-2945 http://dx.doi.org/10.1590/0100-29452017411 GRAPEVINE VIRUS DISEASES: ECONOMIC IMPACT AND CURRENT ADVANCES IN VIRAL PROSPECTION AND MANAGEMENT1 MARCOS FERNANDO BASSO2, THOR VINÍCIUS MArtins FAJARDO3, PASQUALE SALDARELLI4 ABSTRACT-Grapevine (Vitis spp.) is a major vegetative propagated fruit crop with high socioeconomic importance worldwide. It is susceptible to several graft-transmitted agents that cause several diseases and substantial crop losses, reducing fruit quality and plant vigor, and shorten the longevity of vines. The vegetative propagation and frequent exchanges of propagative material among countries contribute to spread these pathogens, favoring the emergence of complex diseases. Its perennial life cycle further accelerates the mixing and introduction of several viral agents into a single plant. Currently, approximately 65 viruses belonging to different families have been reported infecting grapevines, but not all cause economically relevant diseases. The grapevine leafroll, rugose wood complex, leaf degeneration and fleck diseases are the four main disorders having worldwide economic importance. In addition, new viral species and strains have been identified and associated with economically important constraints to grape production. In Brazilian vineyards, eighteen viruses, three viroids and two virus-like diseases had already their occurrence reported and were molecularly characterized. Here, we review the current knowledge of these viruses, report advances in their diagnosis and prospection of new species, and give indications about the management of the associated grapevine diseases. Index terms: Vegetative propagation, plant viruses, crop losses, berry quality, next-generation sequencing. VIROSES EM VIDEIRAS: IMPACTO ECONÔMICO E RECENTES AVANÇOS NA PROSPECÇÃO DE VÍRUS E MANEJO DAS DOENÇAS DE ORIGEM VIRAL RESUMO-A videira (Vitis spp.) é propagada vegetativamente e considerada uma das principais culturas frutíferas por sua importância socioeconômica mundial. -
MOLECULAR BIOLOGY and EPIDEMIOLOGY of GRAPEVINE LEAFROLL- ASSOCIATED VIRUSES by BHANU PRIYA DONDA a Dissertation Submitted in Pa
MOLECULAR BIOLOGY AND EPIDEMIOLOGY OF GRAPEVINE LEAFROLL- ASSOCIATED VIRUSES By BHANU PRIYA DONDA A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSPHY WASHINGTON STATE UNIVERSITY Department of Plant Pathology MAY 2016 © Copyright by BHANU PRIYA DONDA, 2016 All Rights Reserved THANKS Bioengineering MAY 2014 © Copyright by BHANU PRIYA DONDA, 2016 All Rights Reserved To the Faculty of Washington State University: The members of the Committee appointed to examine the dissertation of BHANU PRIYA DONDA find it satisfactory and recommend that it be accepted. Naidu A. Rayapati, Ph.D., Chair Dennis A. Johnson, Ph.D. Duroy A. Navarre, Ph.D. George J. Vandemark, Ph.D. Siddarame Gowda, Ph.D. ii ACKNOWLEDGEMENT I would like to express my respect and deepest gratitude towards my advisor and mentor, Dr. Naidu Rayapati. I am truly appreciative of the opportunity to pursue my doctoral degree under his guidance at Washington State University (WSU), a challenging and rewarding experience that I will value the rest of my life. I am thankful to my doctoral committee members: Dr. Dennis Johnson, Dr. George Vandemark, Dr. Roy Navarre and Dr. Siddarame Gowda for helpful advice, encouragement and guidance. I would like to thank Dr. Sandya R Kesoju (USDA-IAREC, Prosser, WA) and Dr. Neil Mc Roberts (University of California, Davis) for their statistical expertise, suggestions and collaborative research on the epidemiology of grapevine leafroll disease. To Dr. Gopinath Kodetham (University of Hyderabad, Hyderabad, India), thank you for believing in me and encouraging me to go the extra mile. I thank Dr. Sridhar Jarugula (Ohio State University Agricultural Research and Development Center, Wooster, University of Ohio, Ohio, USA), Dr. -
EPPO Reporting Service
ORGANISATION EUROPEENNE ET MEDITERRANEENNE POUR LA PROTECTION DES PLANTES EUROPEAN AND MEDITERRANEAN PLANT PROTECTION ORGANIZATION EPPO Reporting Service NO. 6 PARIS, 2020-06 General 2020/112 New data on quarantine pests and pests of the EPPO Alert List 2020/113 New and revised dynamic EPPO datasheets are available in the EPPO Global Database 2020/114 EPPO report on notifications of non-compliance Pests 2020/115 Anoplophora glabripennis found in South Carolina (US) 2020/116 Update on the situation of Popillia japonica in Italy 2020/117 Update of the situation of Tecia solanivora in Spain 2020/118 Dryocosmus kuriphilus found again in the Czech Republic 2020/119 Eradication of Paysandisia archon from Switzerland 2020/120 Eradication of Comstockaspis perniciosa from Poland 2020/121 First report of Globodera rostochiensis in Uganda Diseases 2020/122 First report of tomato brown rugose fruit virus in Poland 2020/123 Update of the situation of tomato brown rugose fruit virus in the United Kingdom 2020/124 Update of the situation of tomato brown rugose fruit virus in the USA 2020/125 Tomato brown rugose fruit virus does not occur in Egypt 2020/126 Eradication of tomato chlorosis virus from the United Kingdom 2020/127 Tomato spotted wilt virus found in Romania 2020/128 First report of High Plains wheat mosaic virus in Ukraine 2020/129 Update on the situation of Pantoea stewartii subsp. stewartii in Slovenia 2020/130 Update on the situation of Pantoea stewartii subsp. stewartii in Italy 2020/131 First report of Peronospora aquilegiicola, the downy mildew of columbines in Germany Invasive plants 2020/132 Lycium ferocissimum in the EPPO region: addition to the EPPO Alert List 2020/133 First report of Amaranthus tuberculatus in Croatia 2020/134 First report of Microstegium vimineum in Canada 2020/135 Disposal methods for invasive alien plants 2020/136 EPPO Alert List species prioritised 21 Bld Richard Lenoir Tel: 33 1 45 20 77 94 Web: www.eppo.int 75011 Paris E-mail: [email protected] GD: gd.eppo.int EPPO Reporting Service 2020 no. -
Changes to Virus Taxonomy 2004
Arch Virol (2005) 150: 189–198 DOI 10.1007/s00705-004-0429-1 Changes to virus taxonomy 2004 M. A. Mayo (ICTV Secretary) Scottish Crop Research Institute, Invergowrie, Dundee, U.K. Received July 30, 2004; accepted September 25, 2004 Published online November 10, 2004 c Springer-Verlag 2004 This note presents a compilation of recent changes to virus taxonomy decided by voting by the ICTV membership following recommendations from the ICTV Executive Committee. The changes are presented in the Table as decisions promoted by the Subcommittees of the EC and are grouped according to the major hosts of the viruses involved. These new taxa will be presented in more detail in the 8th ICTV Report scheduled to be published near the end of 2004 (Fauquet et al., 2004). Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., and Ball, L.A. (eds) (2004). Virus Taxonomy, VIIIth Report of the ICTV. Elsevier/Academic Press, London, pp. 1258. Recent changes to virus taxonomy Viruses of vertebrates Family Arenaviridae • Designate Cupixi virus as a species in the genus Arenavirus • Designate Bear Canyon virus as a species in the genus Arenavirus • Designate Allpahuayo virus as a species in the genus Arenavirus Family Birnaviridae • Assign Blotched snakehead virus as an unassigned species in family Birnaviridae Family Circoviridae • Create a new genus (Anellovirus) with Torque teno virus as type species Family Coronaviridae • Recognize a new species Severe acute respiratory syndrome coronavirus in the genus Coro- navirus, family Coronaviridae, order Nidovirales -
Beet Necrotic Yellow Vein Virus (Benyvirus)
EuropeanBlackwell Publishing Ltd and Mediterranean Plant Protection Organization PM 7/30 (2) Organisation Européenne et Méditerranéenne pour la Protection des Plantes Diagnostics1 Diagnostic Beet necrotic yellow vein virus (benyvirus) Specific scope Specific approval and amendment This standard describes a diagnostic protocol for Beet necrotic This Standard was developed under the EU DIAGPRO Project yellow vein virus (benyvirus). (SMT 4-CT98-2252) through a partnership of contractor laboratories and intercomparison laboratories in European countries. Approved as an EPPO Standard in 2003-09. Revision approved in 2006-09. Introduction Identity Rhizomania disease of sugar beet was first reported in Italy Name: Beet necrotic yellow vein virus (Canova, 1959) and has since been reported in more than Acronym: BNYVV 25 countries. The disease causes economic loss to sugar beet Taxonomic position: Viruses, Benyvirus (Beta vulgaris var. saccharifera) by reducing yield. Rhizomania EPPO computer code: BNYVV0 is caused by Beet necrotic yellow vein virus (BNYVV), which Phytosanitary categorization: EPPO A2 list no. 160; EU is transmitted by the soil protozoan, Polymyxa betae (family Annex designation I/B. Plasmodiophoraceae). The virus can survive in P. betae cystosori for more than 15 years. The symptoms of rhizomania, Detection also known as ‘root madness’, include root bearding, stunting, chlorosis of leaves, yellow veining and necrosis of leaf veins. The disease affects all subspecies of Beta vulgaris, including The virus is spread by movement of soil, primarily on machinery, sugar beet (Beta vulgaris subsp. maritime), fodder beet (Beta sugar beet roots, stecklings, other root crops, such as potato, vulgaris subsp. vulgaris), red beet (Beta vulgaris subsp. cicla), and in composts and soil. -
Diseases of Sugar Beet
Molecular Characterization of Beet Necrotic Yellow Vein Virus in Greece and Transgenic Approaches towards Enhancing Rhizomania Disease Resistance Ourania I. Pavli Thesis committee Thesis supervisor Prof.dr. J.M. Vlak Personal Chair at the Laboratory of Virology Wageningen University Prof.dr. G.N. Skaracis Head of Plant Breeding and Biometry Department of Crop Science Agricultural University of Athens, Greece Thesis co-supervisors Dr.ir. M. Prins Program Scientist KeyGene, Wageningen Prof.dr. N.J. Panopoulos Professor of Biotechnology and Applied Biology Department of Biology University of Crete, Greece Other members Prof.dr. R.G.F. Visser, Wageningen University Prof.dr.ir. L.C. van Loon, Utrecht University Dr.ir. R.A.A. van der Vlugt, Plant Research International, Wageningen Prof.dr. M. Varrelmann, Göttingen University, Germany This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. 2 Molecular Characterization of Beet Necrotic Yellow Vein Virus in Greece and Transgenic Approaches towards Enhancing Rhizomania Disease Resistance Ourania I. Pavli Thesis submitted in partial fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof.dr. M.J. Kropff in the presence of the Thesis Committee appointed by the Doctorate Board to be defended in public on Monday 11 January 2010 at 1.30 PM in the Aula 3 Pavli, O.I. Molecular characterization of beet necrotic yellow vein virus in Greece and transgenic approaches towards enhancing rhizomania -
Origin, Adaptation and Evolutionary Pathways of Fungal Viruses
Virus Genes 16:1, 119±131, 1998 # 1998 Kluwer Academic Publishers, Boston. Manufactured in The Netherlands. Origin, Adaptation and Evolutionary Pathways of Fungal Viruses SAID A. GHABRIAL Department of Plant Pathology, University of Kentucky, Lexington, KY, USA Abstract. Fungal viruses or mycoviruses are widespread in fungi and are believed to be of ancient origin. They have evolved in concert with their hosts and are usually associated with symptomless infections. Mycoviruses are transmitted intracellularly during cell division, sporogenesis and cell fusion, and they lack an extracellular phase to their life cycles. Their natural host ranges are limited to individuals within the same or closely related vegetative compatibility groups. Typically, fungal viruses are isometric particles 25±50 nm in diameter, and possess dsRNA genomes. The best characterized of these belong to the family Totiviridae whose members have simple undivided dsRNA genomes comprised of a coat protein (CP) gene and an RNA dependent RNA polymerase (RDRP) gene. A recently characterized totivirus infecting a ®lamentous fungus was found to be more closely related to protozoan totiviruses than to yeast totiviruses suggesting these viruses existed prior to the divergence of fungi and protozoa. Although the dsRNA viruses at large are polyphyletic, based on RDRP sequence comparisons, the totiviruses are monophyletic. The theory of a cellular self-replicating mRNA as the origin of totiviruses is attractive because of their apparent ancient origin, the close relationships among their RDRPs, genome simplicity and the ability to use host proteins ef®ciently. Mycoviruses with bipartite genomes ( partitiviruses), like the totiviruses, have simple genomes, but the CP and RDRP genes are on separate dsRNA segments. -
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fmicb-11-621179 December 26, 2020 Time: 15:34 # 1 ORIGINAL RESEARCH published: 08 January 2021 doi: 10.3389/fmicb.2020.621179 Next-Generation Sequencing Reveals a Novel Emaravirus in Diseased Maple Trees From a German Urban Forest Artemis Rumbou1*, Thierry Candresse2, Susanne von Bargen1 and Carmen Büttner1 1 Faculty of Life Sciences, Albrecht Daniel Thaer-Institute of Agricultural and Horticultural Sciences, Humboldt-Universität zu Berlin, Berlin, Germany, 2 UMR 1332 Biologie du Fruit et Pathologie, INRAE, University of Bordeaux, UMR BFP, Villenave-d’Ornon, France While the focus of plant virology has been mainly on horticultural and field crops as well as fruit trees, little information is available on viruses that infect forest trees. Utilization of next-generation sequencing (NGS) methodologies has revealed a significant number of viruses in forest trees and urban parks. In the present study, the full-length genome of a novel Emaravirus has been identified and characterized from sycamore maple Edited by: (Acer pseudoplatanus) – a tree species of significant importance in urban and forest Ahmed Hadidi, areas – showing leaf mottle symptoms. RNA-Seq was performed on the Illumina Agricultural Research Service, HiSeq2500 system using RNA preparations from a symptomatic and a symptomless United States Department of Agriculture, United States maple tree. The sequence assembly and analysis revealed the presence of six genomic Reviewed by: RNA segments in the symptomatic sample (RNA1: 7,074 nt-long encoding the viral Beatriz Navarro, replicase; RNA2: 2,289 nt-long encoding the glycoprotein precursor; RNA3: 1,525 nt- Istituto per la Protezione Sostenibile delle Piante, Italy long encoding the nucleocapsid protein; RNA4: 1,533 nt-long encoding the putative Satyanarayana Tatineni, movement protein; RNA5: 1,825 nt-long encoding a hypothetical protein P5; RNA6: Agricultural Research Service, 1,179 nt-long encoding a hypothetical protein P6). -
Symptom Recovery in Tomato Ringspot Virus Infected Nicotiana
SYMPTOM RECOVERY IN TOMATO RINGSPOT VIRUS INFECTED NICOTIANA BENTHAMIANA PLANTS: INVESTIGATION INTO THE ROLE OF PLANT RNA SILENCING MECHANISMS by BASUDEV GHOSHAL B.Sc., Surendranath College, University of Calcutta, Kolkata, India, 2003 M. Sc., University of Calcutta, Kolkata, India, 2005 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE AND POSTDOCTORAL STUDIES (Botany) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) August 2014 © Basudev Ghoshal, 2014 Abstract Symptom recovery in virus-infected plants is characterized by the emergence of asymptomatic leaves after a systemic symptomatic phase of infection and has been linked with the clearance of the viral RNA due to the induction of RNA silencing. However, the recovery of Tomato ringspot virus (ToRSV)-infected Nicotiana benthamiana plants is not associated with viral RNA clearance in spite of active RNA silencing triggered against viral sequences. ToRSV isolate Rasp1-infected plants recover from infection at 27°C but not at 21°C, indicating a temperature-dependent recovery. In contrast, plants infected with ToRSV isolate GYV recover from infection at both temperatures. In this thesis, I studied the molecular mechanisms leading to symptom recovery in ToRSV-infected plants. I provide evidence that recovery of Rasp1-infected N. benthamiana plants at 27°C is associated with a reduction of the steady-state levels of RNA2-encoded coat protein (CP) but not of RNA2. In vivo labelling experiments revealed efficient synthesis of CP early in infection, but reduced RNA2 translation later in infection. Silencing of Argonaute1-like (NbAgo1) genes prevented both symptom recovery and RNA2 translation repression at 27°C. -
The Viruses of Wild Pigeon Droppings
The Viruses of Wild Pigeon Droppings Tung Gia Phan1,2, Nguyen Phung Vo1,3,A´ kos Boros4,Pe´ter Pankovics4,Ga´bor Reuter4, Olive T. W. Li6, Chunling Wang5, Xutao Deng1, Leo L. M. Poon6, Eric Delwart1,2* 1 Blood Systems Research Institute, San Francisco, California, United States of America, 2 Department of Laboratory Medicine, University of California San Francisco, San Francisco, California, United States of America, 3 Pharmacology Department, School of Pharmacy, Ho Chi Minh City University of Medicine and Pharmacy, Ho Chi Minh, Vietnam, 4 Regional Laboratory of Virology, National Reference Laboratory of Gastroenteric Viruses, A´ NTSZ Regional Institute of State Public Health Service, Pe´cs, Hungary, 5 Stanford Genome Technology Center, Stanford, California, United States of America, 6 Centre of Influenza Research and School of Public Health, University of Hong Kong, Hong Kong SAR Abstract Birds are frequent sources of emerging human infectious diseases. Viral particles were enriched from the feces of 51 wild urban pigeons (Columba livia) from Hong Kong and Hungary, their nucleic acids randomly amplified and then sequenced. We identified sequences from known and novel species from the viral families Circoviridae, Parvoviridae, Picornaviridae, Reoviridae, Adenovirus, Astroviridae, and Caliciviridae (listed in decreasing number of reads), as well as plant and insect viruses likely originating from consumed food. The near full genome of a new species of a proposed parvovirus genus provisionally called Aviparvovirus contained an unusually long middle ORF showing weak similarity to an ORF of unknown function from a fowl adenovirus. Picornaviruses found in both Asia and Europe that are distantly related to the turkey megrivirus and contained a highly divergent 2A1 region were named mesiviruses. -
The Cucumber Leaf Spot Virus P25 Auxiliary Replicase Protein Binds and Modifies the Endoplasmic Reticulum Via N-Terminal Transmembrane Domains
Virology 468-470 (2014) 36–46 Contents lists available at ScienceDirect Virology journal homepage: www.elsevier.com/locate/yviro The Cucumber leaf spot virus p25 auxiliary replicase protein binds and modifies the endoplasmic reticulum via N-terminal transmembrane domains Kankana Ghoshal a, Jane Theilmann b, Ron Reade b, Helene Sanfacon b,D’Ann Rochon a,b,n a University of British Columbia, Faculty of Land and Food Systems, Vancouver, British Columbia, Canada V6T 1Z4 b Agriculture and Agri-Food Canada Pacific Agri-Food Research Centre, 4200 Hwy 97, Summerland, British Columbia, Canada V0H 1Z0 article info abstract Article history: Cucumber leaf spot virus (CLSV) is a member of the Aureusvirus genus, family Tombusviridae. The auxiliary Received 10 June 2014 replicase of Tombusvirids has been found to localize to endoplasmic reticulum (ER), peroxisomes or Returned to author for revisions mitochondria; however, localization of the auxiliary replicase of aureusviruses has not been determined. 28 June 2014 We have found that the auxiliary replicase of CLSV (p25) fused to GFP colocalizes with ER and that three Accepted 13 July 2014 predicted transmembrane domains (TMDs) at the N-terminus of p25 are sufficient for targeting, Available online 16 August 2014 although the second and third TMDs play the most prominent roles. Confocal analysis of CLSV infected Keywords: 16C plants shows that the ER becomes modified including the formation of punctae at connections Aureusvirus between ER tubules and in association with the nucleus. Ultrastructural analysis shows that the Auxiliary replicase cytoplasm contains numerous vesicles which are also found between the perinuclear ER and nuclear Endoplasmic reticulum membrane.