Extended and Continuous Decline in Effective Population Size Results in Low Genomic Diversity in the World’s Rarest Hyena Species, the Brown Hyena Michael V. Westbury,*,1,2 Stefanie Hartmann,2 Axel Barlow,2 Ingrid Wiesel,3,4 Viyanna Leo,5 Rebecca 6,7 6 8 9 10 2 Welch, Daniel M. Parker, Florian Sicks, Arne Ludwig, Love Dalen, and Michael Hofreiter Downloaded from https://academic.oup.com/mbe/article-abstract/35/5/1225/4924857 by Swedish Museum of Natural History user on 14 December 2018 1Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark 2Evolutionary Adaptive Genomics, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany 3Brown Hyena Research Project Trust Fund, Lu¨deritz, Namibia 4Mammal Research Institute, University of Pretoria, Pretoria, South Africa 5Center of Ecosystem Science, University of New South Wales, NSW, Australia 6Wildlife and Reserve Management Research Group, Department of Zoology and Entomology, Rhodes University, Grahamstown, South Africa 7Department of Zoology and Entomology, University of the Free State, Phuthaditjhaba, South Africa 8Tierpark Berlin, Berlin, Germany 9Department of Evolutionary Genetics, Leibniz-Institute for Zoo and Wildlife Research, Berlin, Germany 10Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden *Corresponding author: E-mail:
[email protected]. Associate editor: Beth Shapiro Brown hyena raw sequencing reads can be found under the accession codes SAMN07431150–SAMN07431164. The striped hyena assembly can be found at PEQU00000000 and the raw reads can be found at SAMN07212965. The brown hyena mitochondrial genomes can be found at MF593938–MF593952. Abstract Hyenas (family Hyaenidae), as the sister group to cats (family Felidae), represent a deeply diverging branch within the cat-like carnivores (Feliformia).