Field Guide for the Identification of Damage on Woody Sentinel Plants (Eds A
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Pembrokeshire Fungus Recorder Issue 2/2019
Pembrokeshire Fungus Recorder Issue 2/2019 Published biannually by the Pembrokeshire Fungus Recording Network www.pembsfungi.org.uk Contents 1. Contents & Editorial 2. Fungus records 4. Events - Training day - Joint events 6. Pembrokeshire Nature Partnership 6. Illustrating waxcaps 7. Entoloma vezzenaense - new to Britain Editorial With the season well underway, time for a mid-term report. Rainfall (mm) Rainfall figures (courtesy of Orielton Field Study Centre) show that after a fairly average April-July rainfall, August and September were wetter than average: something that may explain a reasonably promising start to the waxcap-grassland season. This year has been a busy one for events - and in this issue we report on our training day in May which covered rusts and DNA-barcoding and two autumn field recording events which were run in conjunction with other groups. Our next issue will include reports on our UK Fungus Day event hosted at Orielton Field Centre together with other recent recording/traing events in which we have been involved. As we develop our expertise in DNA-barcoding techiques we are happy to consider in-house projects where we use barcoding to support the identification of cryptic species from particular fungus assemblages. Currently we are looking at chanterelles, at the suggestion of Adam Pollard-Powell, and will report on this, and our work on sand dune morels, in the next issue. David Harries October 2019 Records Fungal galls on plants June produced some interesting fungal plant pathogens with the County's second record for camellia galls (Exobasidium camelliae) (pictured right) reported by Robin Taylor from his garden in Hayscastle. -
Noble Hardwoods Network
EUROPEAN FOREST GENETIC RESOURCES PROGRAMME (EUFORGEN) Noble Hardwoods Network Report of the second meeting 22-25 March 1997 Lourizan, Spain J. Turok, E. Collin, B. Demesure, G. Eriksson, J. Kleinschmit, M. Rusanen and R. Stephan, compilers ii NOBLE HARDWOODS NETWORK: SECOND MEETING The International Plant Genetic Resources Institute (IPGRl) is an autonomous international scientific organization, supported by the Consultative Group on International Agricultural Research (CGIAR). IPGRl's mandate is to advance the conservation and use of plant genetic resources for the benefit of present and future generations. IPGRl's headquarters is based in Rome, Italy, with offices in another 14 countries worldwide. It operates through three programmes: (1) the Plant Genetic Resources Programme, (2) the CGIAR Genetic Resources Support Programme, and (3) the International Network for the Improvement of Banana and Plantain (INIBAP). The international status of IPGRl is conferred under an Establishment Agreement which, by January 1998, had been signed and ratified by the Governments of Algeria, Australia, Belgium, Benin, Bolivia, Brazil, Burkina Faso, Cameroon, Chile, China, Congo, Costa Rica, Cote d'Ivoire, Cyprus, Czech Republic, Denmark, Ecuador, Egypt, Greece, Guinea, Hungary, India, Indonesia, Iran, Israel, Italy, Jordan, Kenya, Malaysia, Mauritania, Morocco, Pakistan, Panama, Peru, Poland, Portugal, Romania, Russia, Senegal, Slovak Republic, Sudan, Switzerland, Syria, Tunisia, Turkey, Uganda and Ukraine. Financial support for the Research Agenda of -
The Phylogeny of Plant and Animal Pathogens in the Ascomycota
Physiological and Molecular Plant Pathology (2001) 59, 165±187 doi:10.1006/pmpp.2001.0355, available online at http://www.idealibrary.com on MINI-REVIEW The phylogeny of plant and animal pathogens in the Ascomycota MARY L. BERBEE* Department of Botany, University of British Columbia, 6270 University Blvd, Vancouver, BC V6T 1Z4, Canada (Accepted for publication August 2001) What makes a fungus pathogenic? In this review, phylogenetic inference is used to speculate on the evolution of plant and animal pathogens in the fungal Phylum Ascomycota. A phylogeny is presented using 297 18S ribosomal DNA sequences from GenBank and it is shown that most known plant pathogens are concentrated in four classes in the Ascomycota. Animal pathogens are also concentrated, but in two ascomycete classes that contain few, if any, plant pathogens. Rather than appearing as a constant character of a class, the ability to cause disease in plants and animals was gained and lost repeatedly. The genes that code for some traits involved in pathogenicity or virulence have been cloned and characterized, and so the evolutionary relationships of a few of the genes for enzymes and toxins known to play roles in diseases were explored. In general, these genes are too narrowly distributed and too recent in origin to explain the broad patterns of origin of pathogens. Co-evolution could potentially be part of an explanation for phylogenetic patterns of pathogenesis. Robust phylogenies not only of the fungi, but also of host plants and animals are becoming available, allowing for critical analysis of the nature of co-evolutionary warfare. Host animals, particularly human hosts have had little obvious eect on fungal evolution and most cases of fungal disease in humans appear to represent an evolutionary dead end for the fungus. -
Downloaded from by IP: 199.133.24.106 On: Mon, 18 Sep 2017 10:43:32 Spatafora Et Al
UC Riverside UC Riverside Previously Published Works Title The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Permalink https://escholarship.org/uc/item/4485m01m Journal Microbiology spectrum, 5(5) ISSN 2165-0497 Authors Spatafora, Joseph W Aime, M Catherine Grigoriev, Igor V et al. Publication Date 2017-09-01 DOI 10.1128/microbiolspec.funk-0053-2016 License https://creativecommons.org/licenses/by-nc-nd/4.0/ 4.0 Peer reviewed eScholarship.org Powered by the California Digital Library University of California The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies JOSEPH W. SPATAFORA,1 M. CATHERINE AIME,2 IGOR V. GRIGORIEV,3 FRANCIS MARTIN,4 JASON E. STAJICH,5 and MEREDITH BLACKWELL6 1Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331; 2Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907; 3U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598; 4Institut National de la Recherche Agronomique, Unité Mixte de Recherche 1136 Interactions Arbres/Microorganismes, Laboratoire d’Excellence Recherches Avancés sur la Biologie de l’Arbre et les Ecosystèmes Forestiers (ARBRE), Centre INRA-Lorraine, 54280 Champenoux, France; 5Department of Plant Pathology and Microbiology and Institute for Integrative Genome Biology, University of California–Riverside, Riverside, CA 92521; 6Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803 and Department of Biological Sciences, University of South Carolina, Columbia, SC 29208 ABSTRACT The kingdom Fungi is one of the more diverse INTRODUCTION clades of eukaryotes in terrestrial ecosystems, where they In 1996 the genome of Saccharomyces cerevisiae was provide numerous ecological services ranging from published and marked the beginning of a new era in decomposition of organic matter and nutrient cycling to beneficial and antagonistic associations with plants and fungal biology (1). -
Species of Taphrina on Alnus in Slovakia
C zech m y co l. 47 (3), 1994 Species of Taphrina on Alnus in Slovakia Kamila Bacigálová Institute of Botany, Slovak Academy of Sciences, Dúbravská cesta 14, 842 23 Bratislava, Slovak Republic Bacigálová K. (1994): Species of Taphrina on Alnus in Slovakia. - Czech Mycol. 47: 223-236 New data are presented on the occurrence of Taphrina Fr. [T. alni (Berk, et Br.) Gjaerum, Tepiphylla (Sadeb.) Sacc., T. tosquinetii (Westend.) Magn. and T. sadebeckii Johans.) on Alnus Mill. (A. incana (L.) Moench, A. glutinosa (L.) Gaertn.], till now unknown in Slovakia. Brief characteristics as to biology, ecology and distribution of the mentioned fungi as well as their host plants are given together with the ecological characteristics of the new localities. Key words: Taphrina Fr., Alnus Mill., Slovakia, biology, ecology, distribution Bacigálová K. (1994): Druhy rodu Taphrina na hostitelských rastlinách rodu Alnus na Slovensku. - Czech Mycol. 47: 223-236 Sú opísané v rastlinných spoločenstvách na Slovensku doteraz všeobecne málo známe druhy fytopatogénnych húb rodu Taphrina Fr.: Taphrina alni (Berk, et Br.) Gjaerum - grmaník šištičiek jelše, Taphrina epiphylla (Sadeb.) Sacc. - grmaník vetvičiek jelše šedej, Taphrina tosquinetii (Westend.) Magn. - grmaník listov jelše lepkavej, Taphrina sadebeckii Johans. — grmaník listov jelše na druhoch rodu Alnus Mill.: Alnus glutinosa (L.) Gaertn., Alnus incana (L.) Moench). Autorka opisuje symptomy ochorenia na hostitelských rastlinách, anatomicko- morfologické charakteristiky húb, lokality ich výskytu a ich ekologické -
MMA MASTERLIST - Sorted by Taxonomy
MMA MASTERLIST - Sorted by Taxonomy Sunday, December 10, 2017 Page 1 of 86 Amoebozoa Mycetomycota Protosteliomycetes Protosteliales Ceratiomyxaceae Ceratiomyxa fruticulosa Ceratiomyxa fruticulosa var. fruticulosa Ceratiomyxa fruticulosa var. poroides Ceratiomyxa sp. Mycetozoa Myxogastrea Incertae Sedis in Myxogastrea Liceaceae Licea minima Stemonitidaceae Brefeldia maxima Comatricha pulchella Comatricha sp. Comatricha typhoides Stemonitis axifera Stemonitis fusca Stemonitis sp. Stemonitis splendens Chromista Oomycota Incertae Sedis in Oomycota Peronosporales Peronosporaceae Plasmopara viticola Pythiaceae Pythium deBaryanum Oomycetes Saprolegniales Saprolegniaceae Saprolegnia sp. Peronosporea Albuginales Albuginaceae Albugo candida Fungus Ascomycota Ascomycetes Boliniales Boliniaceae Camarops petersii Capnodiales Capnodiaceae Scorias spongiosa Diaporthales Gnomoniaceae Cryptodiaporthe corni Sydowiellaceae Stegophora ulmea Valsaceae Cryphonectria parasitica Valsella nigroannulata Elaphomycetales Elaphomycetaceae Elaphomyces granulatus Elaphomyces sp. Erysiphales Erysiphaceae Erysiphe aggregata Erysiphe cichoracearum Erysiphe polygoni Microsphaera extensa Phyllactinia guttata Podosphaera clandestina Uncinula adunca Uncinula necator Hysteriales Hysteriaceae Glonium stellatum Leotiales Bulgariaceae Crinula caliciiformis Crinula sp. Mycocaliciales Mycocaliciaceae Phaeocalicium polyporaeum Peltigerales Collemataceae Leptogium cyanescens Lobariaceae Sticta fimbriata Nephromataceae Nephroma helveticum Peltigeraceae Peltigera evansiana Peltigera -
A Higher-Level Phylogenetic Classification of the Fungi
mycological research 111 (2007) 509–547 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres A higher-level phylogenetic classification of the Fungi David S. HIBBETTa,*, Manfred BINDERa, Joseph F. BISCHOFFb, Meredith BLACKWELLc, Paul F. CANNONd, Ove E. ERIKSSONe, Sabine HUHNDORFf, Timothy JAMESg, Paul M. KIRKd, Robert LU¨ CKINGf, H. THORSTEN LUMBSCHf, Franc¸ois LUTZONIg, P. Brandon MATHENYa, David J. MCLAUGHLINh, Martha J. POWELLi, Scott REDHEAD j, Conrad L. SCHOCHk, Joseph W. SPATAFORAk, Joost A. STALPERSl, Rytas VILGALYSg, M. Catherine AIMEm, Andre´ APTROOTn, Robert BAUERo, Dominik BEGEROWp, Gerald L. BENNYq, Lisa A. CASTLEBURYm, Pedro W. CROUSl, Yu-Cheng DAIr, Walter GAMSl, David M. GEISERs, Gareth W. GRIFFITHt,Ce´cile GUEIDANg, David L. HAWKSWORTHu, Geir HESTMARKv, Kentaro HOSAKAw, Richard A. HUMBERx, Kevin D. HYDEy, Joseph E. IRONSIDEt, Urmas KO˜ LJALGz, Cletus P. KURTZMANaa, Karl-Henrik LARSSONab, Robert LICHTWARDTac, Joyce LONGCOREad, Jolanta MIA˛ DLIKOWSKAg, Andrew MILLERae, Jean-Marc MONCALVOaf, Sharon MOZLEY-STANDRIDGEag, Franz OBERWINKLERo, Erast PARMASTOah, Vale´rie REEBg, Jack D. ROGERSai, Claude ROUXaj, Leif RYVARDENak, Jose´ Paulo SAMPAIOal, Arthur SCHU¨ ßLERam, Junta SUGIYAMAan, R. Greg THORNao, Leif TIBELLap, Wendy A. UNTEREINERaq, Christopher WALKERar, Zheng WANGa, Alex WEIRas, Michael WEISSo, Merlin M. WHITEat, Katarina WINKAe, Yi-Jian YAOau, Ning ZHANGav aBiology Department, Clark University, Worcester, MA 01610, USA bNational Library of Medicine, National Center for Biotechnology Information, -
Collecting and Recording Fungi
British Mycological Society Recording Network Guidance Notes COLLECTING AND RECORDING FUNGI A revision of the Guide to Recording Fungi previously issued (1994) in the BMS Guides for the Amateur Mycologist series. Edited by Richard Iliffe June 2004 (updated August 2006) © British Mycological Society 2006 Table of contents Foreword 2 Introduction 3 Recording 4 Collecting fungi 4 Access to foray sites and the country code 5 Spore prints 6 Field books 7 Index cards 7 Computers 8 Foray Record Sheets 9 Literature for the identification of fungi 9 Help with identification 9 Drying specimens for a herbarium 10 Taxonomy and nomenclature 12 Recent changes in plant taxonomy 12 Recent changes in fungal taxonomy 13 Orders of fungi 14 Nomenclature 15 Synonymy 16 Morph 16 The spore stages of rust fungi 17 A brief history of fungus recording 19 The BMS Fungal Records Database (BMSFRD) 20 Field definitions 20 Entering records in BMSFRD format 22 Locality 22 Associated organism, substrate and ecosystem 22 Ecosystem descriptors 23 Recommended terms for the substrate field 23 Fungi on dung 24 Examples of database field entries 24 Doubtful identifications 25 MycoRec 25 Recording using other programs 25 Manuscript or typescript records 26 Sending records electronically 26 Saving and back-up 27 Viruses 28 Making data available - Intellectual property rights 28 APPENDICES 1 Other relevant publications 30 2 BMS foray record sheet 31 3 NCC ecosystem codes 32 4 Table of orders of fungi 34 5 Herbaria in UK and Europe 35 6 Help with identification 36 7 Useful contacts 39 8 List of Fungus Recording Groups 40 9 BMS Keys – list of contents 42 10 The BMS website 43 11 Copyright licence form 45 12 Guidelines for field mycologists: the practical interpretation of Section 21 of the Drugs Act 2005 46 1 Foreword In June 2000 the British Mycological Society Recording Network (BMSRN), as it is now known, held its Annual Group Leaders’ Meeting at Littledean, Gloucestershire. -
SYSTEMATICS of DIVISION ASCOMYCOTA 1 Group
References: Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008. Dictionary of the Fungi (10th ed.). Wallingford, UK: CABI. Webster, J., & Weber, R. (2007). Introduction to fungi. Cambridge, UK: Cambridge University Press. Url1.: https://en.wikipedia.org/wiki/Ascomycota SYSTEMATICS OF DIVISION ASCOMYCOTA 1 Group: Plectomycetes Plectomycetes is an artificial group of Ascomycota and it originally contained all Ascomycete fungi which produce their asci within a cleistothecium. Plectomycetes can be defined by the following set of characters; Cleistothecium or gymnothecium is usually present, ascogenous hyphae are usually not conspicuous, asci are scattered throughout the cleistothecium, asci are mostly globose and thin-walled, and the ascospores are released passively after disintegration of the ascus wall, not by active discharge, ascospores are small, unicellular and usually spherical or ovoid, conidia are commonly produced from phialides or as arthroconidia. Class: Eurotiomycetes Most members of the class produce an enclosed structure cleistothecium within which they produce their spores. It contains 10 order, 27 families 280 genus and about 3400 species. Order: Onygenales Onygenales members are able to digest keratin and because of this have become dominant organisms in environments where keratin is available. The most members have colorless cleistothecia and ascospores. The spherical to egg-shaped asci are always uniformly packed in the centrum and may be dispersed among hyphal elements. The ascospores are always single-celled (example: Chrysosporium, Microsporum and Trichophyton). Order: Eurotiales Most members of the order have phialidic asexual stages belonging to the genera Aspergillus and Penicillium or, less commonly, to Paecilomyces or even simpler types. Rarely there is no anamorph at all. -
Functions, Transmission and Emission of the Canopy Microbiota Tania Fort
Functions, transmission and emission of the canopy microbiota Tania Fort To cite this version: Tania Fort. Functions, transmission and emission of the canopy microbiota. Vegetal Biology. Univer- sité de Bordeaux, 2019. English. NNT : 2019BORD0338. tel-02869590 HAL Id: tel-02869590 https://tel.archives-ouvertes.fr/tel-02869590 Submitted on 16 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THÈSE PRESENTÉE POUR OBTENIR LE GRADE DE DOCTEUR DE L’UNIVERSITE DE BORDEAUX ECOLE DOCTORALE SCIENCES ET ENVIRONNEMENTS ECOLOGIE ÉVOLUTIVE, FONCTIONNELLE, ET DES COMMUNAUTÉS Par Tania Fort Fonctions, transmission et émission du microbiote de la canopée Sous la direction de Corinne Vacher Soutenue le 10 décembre 2019 Membres du jury : Mme. Anne-Marie DELORT Directrice de recherche Institut de Chimie de Clermont-Ferrand Rapporteuse M. Stéphane Uroz Directeur de recherche INRA Nancy Rapporteur Mme. Patricia Luis Maître de conférence Université de Lyon 1 Rapporteuse Mme. Annabel Porté Directrice de recherche INRA Bordeaux Présidente Mme. Corinne Vacher Directrice de recherche INRA Bordeaux Directrice Fonctions, transmission et émission du microbiote de la canopée. Les arbres interagissent avec des communautés microbiennes diversifiées qui influencent leur fitness et le fonctionnement des écosystèmes terrestres. -
Tarset and Greystead Biological Records
Tarset and Greystead Biological Records published by the Tarset Archive Group 2015 Foreword Tarset Archive Group is delighted to be able to present this consolidation of biological records held, for easy reference by anyone interested in our part of Northumberland. It is a parallel publication to the Archaeological and Historical Sites Atlas we first published in 2006, and the more recent Gazeteer which both augments the Atlas and catalogues each site in greater detail. Both sets of data are also being mapped onto GIS. We would like to thank everyone who has helped with and supported this project - in particular Neville Geddes, Planning and Environment manager, North England Forestry Commission, for his invaluable advice and generous guidance with the GIS mapping, as well as for giving us information about the archaeological sites in the forested areas for our Atlas revisions; Northumberland National Park and Tarset 2050 CIC for their all-important funding support, and of course Bill Burlton, who after years of sharing his expertise on our wildflower and tree projects and validating our work, agreed to take this commission and pull everything together, obtaining the use of ERIC’s data from which to select the records relevant to Tarset and Greystead. Even as we write we are aware that new records are being collected and sites confirmed, and that it is in the nature of these publications that they are out of date by the time you read them. But there is also value in taking snapshots of what is known at a particular point in time, without which we have no way of measuring change or recognising the hugely rich biodiversity of where we are fortunate enough to live. -
Plant Diseases Affecting Forest Trees in Northeastern Minnesota's Regional Copper-Nickel Study Area
This document is made available electronically by the Minnesota Legislative Reference Library as part of an ongoing digital archiving project. http://www.leg.state.mn.us/lrl/lrl.asp REGIONAL COPPER-NICKEL STUDY \PLANT DISEASES AFFECTING FOREST TREES IN NORTHEASTERN MINNESOTA'S REGIONAL COPPER-NICKEL STUDY AREA Minnesota Environmental Quality Boarq Authors: Richard J. Zeyen Associate P~ofessor James V. Groth Assistant Professor Department of Plant Pathology University of Minnesota June 15, 1978 PRELIMINARY DRAFT REPORT, SUBJECT TO REVIEW Page 1 INTRODUCTION This report is based upon lists of major vegetation community types, compiled for a preliminary study of the Regional Copper-Nickel Study Area. Only dominant plant species, as determined by releve techniques, have been included in the discussion of diseases. The intent of this'report is to present a brief survey of the major diseases caused primarily by biotic agents. The information was ob tained from general references and from personal observations of the diseases of the area over the past 11 years. The report is divided into two parts: (1) a comprehensive table of diseases recorded in the area and their causal agents (Table 1), and (2) brief descriptions of 25 diseases of exceptional economic or aesthetic importance. In some cases, particularly for less well documented aesthetically important (conspicuous) but not economically important diseases, no description is included. No attempt was made to deal with the extreme complexity of disease organism interactions and ecology or to update fungal nomen clature and taxonomy. ' The approach was to use concepts and nomenclature employed in most of the standard reference sources.