Studies on the Inter-Tidal Rocky Shore Crabs (Decapoda: Crustacea: Brachyura) from Goa, West Coast of India
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Studies on the inter-tidal rocky shore crabs (Decapoda: Crustacea: Brachyura) from Goa, West coast of India Thesis submitted to Goa University for the degree of Doctor of Philosophy in Marine Sciences by J. Vijaylaxmi School of Earth, Ocean and Atmospheric Sciences Goa University, Goa - 403 206, India December, 2020 II Shri Ganesh II Dedicated to My Family for their love and endless support Statement As required by the University ordinance 0.19.8 (vi), I state that the present thesis entitled “Studies on the inter-tidal rocky shore crabs (Decapoda: Crustacea: Brachyura) from Goa, West coast of India” is my original contribution and the same has not been submitted on any previous occasion. To the best of my knowledge the present study is the first comprehensive work of its kind from the area mentioned. The literature related to the problem investigated has been cited. Due acknowledgments have been made wherever facilities and suggestions have been availed of. J. Vijaylaxmi Certificate This is to certify that the thesis entitled “Studies on the inter-tidal rocky shore crabs (Decapoda: Crustacea: Brachyura) from Goa, West coast of India”, submitted by Miss. J. Vijaylaxmi for the award of Doctor of Philosophy in School of Earth, Ocean and Atmospheric Sciences is based on her original studies carried out by her under my supervision. The thesis or any part thereof has not been previously submitted for any degree or diploma in any Universities or Institutions. Professor C. U. Rivonker Research Guide School of Earth, Ocean and Atmospheric Sciences Goa University Taleigao Plateau, 403 206, Goa ACKNOWLEDGEMENTS I wish to sincerely thank all those intimately involved in materializing this thesis. First and foremost, I would like to express a deep sense of gratitude to my mentor, Professor C. U. Rivonker, School of Earth, Ocean and Atmospheric Sciences, Goa University for giving me an opportunity to work under his able guidance. I wish to convey my special thanks to Dr. Vinay Padate, Dr. Mahabaleshwar Hegde and Dr. Dinesh Velip, for teaching me taxonomy and the intricacies of data handling, processing and presentation and also for the fruitful suggestions given at various stages of my Ph. D. programme. I would whole heartedly thank Dr. S.S. Sawant, Retd Scientist, NIO and Dr. Aftab A. Can for inspiration and teaching me Statistical analysis and making me acquainted with software, data handling and processing respectively. I also wish to thank Dr. Anup Mandal, RGCA, Tamil Nadu, for extending help in connection with the DNA sequencing of crab samples. I am highly indebted to Dr. Dattesh. V. Desai, Principal Scientist at CSIR-National Institute of Oceanography, Goa, and Prof. M. K. Janarthanam, Prof. H. B. Menon, Prof. V. M. Matta, members of FRC for their timely suggestions that enable to improve the quality of the thesis. I am also grateful to the Directorate General of Shipping, Government of India for funding my tenure as Research Assistant. UGC - Rajiv Gandhi National Fellowship (RGNF), funded by Ministry of Social justice and empowerment, New Delhi, for providing me fellowship for my entire Ph. D. programme. I also appreciate the constructive criticism of the anonymous reviewers that enabled enhancing the quality of the published papers. I would also like to thank all the supporting staff of the Department of Marine Sciences for their help in laboratory and administrative works. Finally, I take this opportunity to thank my close friends from Goa University and NIO who were always supportive of my endeavor. J. Vijaylaxmi CONTENTS Page List of Tables i - ii List of Figures iii - v Chapter 1. General Introduction 1-5 1.1. Background information 5-15 1.2. Literature review 15-16 1.3. Objectives Chapter 2. Materials and Methods 17-24 2.1. Study area 17-18 2.2. Sample collection and preservation 18-23 2.3. Statistical analysis 23-24 Chapter 3. Taxonomy and diversity of rocky shore crabs 25-56 3.1. Introduction 25-26 3.2. Methodology 26-28 3.3. Results 28-54 3.4. Discussion 55-56 Chapter 4. Spatial and temporal variations of few selected 57-74 species of rock crabs 4.1. Introduction 57-58 4.2. Methodology 58-59 4.3. Results 59-71 4.4. Discussion 71-74 Chapter 5. Reproductive biology of few selected species 75-87 of rock crabs 5.1. Introduction 75-76 5.2. Methodology 76-77 5.3. Results 77-85 5.4. Discussion 85-87 Chapter 6. Phylogenetic relationships among few selected 88-103 species of rock crabs 6.1. Introduction 88-89 6.2. Methodology 89-94 6.3. Results 94-101 6.4. Discussion 102-103 Chapter 7. Summary 104-105 References 106-152 List of Tables Table 2.1. Details of sampling surveys carried out in the study area Table 3.1. List of morphological parameters and abbreviations used in the present study Table 3.2. List of Brachyuran crab taxa observed during the study period Table 3.3. Morphological measurements for Dotilla myctiroides (N=49) Table 3.4. Morphometric ratios for Dotilla myctiroides (N = 49) Table 4.1. Contribution of species in Group 1 and Group 2 Table 4.2. Abundance of rocky shore Brachyuran crabs at five sampling stations Table 4.3. Seasonal and spatial difference in crab population using two - way ANOVA Table.4.4. Length range of male, female and ovigerous female crab species used in the present study. Table 5.1. Abundance of male, female, ovigerous females, percentage of ovigerous females and sex ratio of four crab species Table 5.2. CW of male and female of four crab species Table 5.3. Chi-square test on sex ratio of Leptodius exaratus and Epixanthus frontalis Table 5.4. Chi-square test on sex ratio of Metapograpsus frontalis and Heteropanope glabra Table 5.5. Abundance of ovigerous females, egg range, average number of eggs and mean fecundity of four crab species Table 5.6. Fecundity index of four crab species Table 5.7. Results of one-way analysis of variance (ANOVA) between CW and fecundity of Leptodius exaratus. Table 5.8. Results of one-way analysis of variance (ANOVA) between CW and fecundity of Epixanthus frontalis Table 5.9. Results of one-way analysis of variance (ANOVA) between CW and fecundity of Metopograpsus frontalis i Table 5.10. Results of one-way analysis of variance (ANOVA) between CW and fecundity of Heteropanope glabra Table 6.1. Protocol for sequencing Table 6.2. The PCR cycling conditions Table 6.3. List of Forward and Reverse Universal primers of 16S rRNA and COI Table 6.4. Detail of 16S rRNA amplification and sequencing Table 6.5. Detail of COI amplification and sequencing Table 6.6. Brachyuran crab species used for phylogenetic analysis of COI and 16s rRNA Table 6.7. List of reference sequences used for the construction of COI tree Table 6.8. List of reference sequences used for the construction of 16S rRNA tree ii List of Figures Figure 2.1. Map of the study area indicating the sampling sites Figure 3.1. Carupella banlaensis. Line diagrams of (A) the dorsal surface of the carapace; (B) the ventral surface of the orbit and antennulary fossa; (C) the ventral surface of the third maxilliped; (D) the ventral surface of the sternum; (E) the outer surface of the dactylus and the propodus of the right cheliped; (F) the ventral surface of the merus of the left cheliped; (G) the outer surface of the dactylus and the propodus of the left cheliped; (H) the ventral surface of the abdomen (female) Figure 3.2. Carupella banlaensis. Colour photographs of (A) the dorsal surface of the carapace and (B) the ventral surface of the carapace Figure 3.3. Colour photographs (live specimens) of the carapace and the appendages of (A) Carupella banlaensis and (B) Scylla juvenile Figure 3.4. Line diagrams of dorsal surface of carapace of (A) Carupella banlaensis and (B) Scylla juvenile indicating the rostral length (RL) and the carapace length (CL) Figure 3.5. Line diagrams of the antenna (including the basal antennal segment) of (A) Carupella banlaensis and (B) immature Scylla female Figure 3.6. Line diagrams of the dorsal surface of the carapace of (A) Carupella banlaensis (present specimen), (B) Carupella banlaensis (type specimen – China; Tien 1969), (C) Carupella epibranchialis (type specimen – East China Sea; Zarenkov 1970) and (D) Carupella natalensis (Madagascar; Crosnier 1962) Figure 3.7. Dotilla myctiroides (Line diagrams): (A) Frontal margin of carapace; (B) Orbit; (C) Third maxilliped; (D) Major cheliped – dactylus and propodus; (E) Pereiopod (F) Male sternum; (G) Male abdomen Figure 3.8. (A) Photograph of entire second maxilliped Dotilla myctiroides, (B) SEM photograph of section of second maxilliped showing numerous setae, (C) SEM photograph of distal portion of spoon-tipped setae Figure 3.9. SEM photographs of (A) entire G1 (B) distal half of G1 of Dotilla myctiroides iii Figure 3.10. Coloured photograph of (A) dorsal view, (B) ventral view of fresh specimen of Dotilla myctiroides Figure 4.1. Cluster dendrogram of five sampling stations using Bray – Curtis similarity coefficient Figure 4.2. Cluster dendrogram of Species using Bray – Curtis similarity coefficient Figure 4.3. (A) Seasonal and (B) Spatial variations of rarely occurring crab species Figure 4.4. (A) Seasonal and (B) Spatial variations of frequently and commonly occurring crab species Figure 4.5. (A) Seasonal and (B) Spatial variation of less abundance crab species Figure 4.6. Spatial and temporal variations at five stations in (A) Shannon-Wiener diversity, (B) Margalef’s species richness and (C) Pielou’s species evenness measures Figure 4.7. Overall seasonal abundance of five sampling stations Figure 4.8.