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Reptile-Like Physiology in Early Jurassic Stem-Mammals
bioRxiv preprint doi: https://doi.org/10.1101/785360; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Title: Reptile-like physiology in Early Jurassic stem-mammals Authors: Elis Newham1*, Pamela G. Gill2,3*, Philippa Brewer3, Michael J. Benton2, Vincent Fernandez4,5, Neil J. Gostling6, David Haberthür7, Jukka Jernvall8, Tuomas Kankanpää9, Aki 5 Kallonen10, Charles Navarro2, Alexandra Pacureanu5, Berit Zeller-Plumhoff11, Kelly Richards12, Kate Robson-Brown13, Philipp Schneider14, Heikki Suhonen10, Paul Tafforeau5, Katherine Williams14, & Ian J. Corfe8*. Affiliations: 10 1School of Physiology, Pharmacology & Neuroscience, University of Bristol, Bristol, UK. 2School of Earth Sciences, University of Bristol, Bristol, UK. 3Earth Science Department, The Natural History Museum, London, UK. 4Core Research Laboratories, The Natural History Museum, London, UK. 5European Synchrotron Radiation Facility, Grenoble, France. 15 6School of Biological Sciences, University of Southampton, Southampton, UK. 7Institute of Anatomy, University of Bern, Bern, Switzerland. 8Institute of Biotechnology, University of Helsinki, Helsinki, Finland. 9Department of Agricultural Sciences, University of Helsinki, Helsinki, Finland. 10Department of Physics, University of Helsinki, Helsinki, Finland. 20 11Helmholtz-Zentrum Geesthacht, Zentrum für Material-und Küstenforschung GmbH Germany. 12Oxford University Museum of Natural History, Oxford, OX1 3PW, UK. 1 bioRxiv preprint doi: https://doi.org/10.1101/785360; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 13Department of Anthropology and Archaeology, University of Bristol, Bristol, UK. 14Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, UK. -
Size Relationship of the Tympanic Bullae and Pinnae in Bandicoots and Bilbies (Marsupialia: Peramelemorphia)
Size Relationship of the Tympanic Bullae and Pinnae in Bandicoots and Bilbies (Marsupialia: Peramelemorphia) by Melissa Taylor BSc This thesis is presented for the degree of Bachelor of Science Honours, School of Veterinary and Life Sciences, of Murdoch University Perth, Western Australia, 2019 Author’s Declaration I declare that this thesis is my own account of my research and contains as its main content work which has not previously been submitted for a degree at any tertiary education institution. Melissa Taylor iii Abstract Hearing is an important factor allowing species to obtain information about their environment. Variation in tympanic bullae and external pinnae morphology has been linked with hearing sensitivity and sound localisation in different mammals. Bandicoots and bilbies (Order Peramelemorphia) typically occupy omnivorous niches across a range of habitats from open, arid deserts to dense, tropical forests in Australia and New Guinea. The morphology of tympanic bullae and pinnae varies between peramelemorphian taxa. Little is known about the relationship between these structures, or the extent to which they vary with respect to aspects of ecology, environment or behaviour. This thesis investigated the relationship between tympanic bulla and pinna size in 29 species of bandicoot and bilby. Measurements were taken from museum specimens to investigate this relationship using direct measuring methods and linear dimensions. It was hypothesised that an inverse relationship between bullae and pinnae may exist and that species residing in arid regions would have more extreme differences. Environmental variables were examined to determine the level of influence they had on bullae and pinnae. This study found that there was a phylogenetic correlation between the structures and that they were significantly influenced by temperature (max/average) and precipitation (average). -
Husbandry Guidelines for Common Ringtail Possums, Pseudocheirus Peregrinus Mammalia: Pseudocheiridae
32325/01 Casey Poolman E0190918 Husbandry guidelines for Common Ringtail Possums, Pseudocheirus peregrinus Mammalia: Pseudocheiridae Ault Ringtail Possum Image: Casey Poolman Author: Casey Poolman Date of preparation: 7/11/2017 Open Colleges, Course name and number: ACM30310 Certificate III in Captive Animals Trainer: Chris Hosking Husbandry guidelines for Pseudocheirus peregrinus 1 32325/01 Casey Poolman E0190918 Author contact details [email protected] Disclaimer Please note that these husbandry guidelines are student material, created as part of student assessment for Open Colleges ACM30310 Certificate III in Captive Animals. While care has been taken by students to compile accurate and complete material at the time of creation, all information contained should be interpreted with care. No responsibility is assumed for any loss or damage resulting from using these guidelines. Husbandry guidelines are evolving documents that need to be updated regularly as more information becomes available and industry knowledge about animal welfare and care is extended. Husbandry guidelines for Pseudocheirus peregrinus 2 32325/01 Casey Poolman E0190918 Workplace Health and Safety risks warning Ringtail Possums are not an aggressive possum and will mostly try to freeze or hide when handled, however they can and do bite, which can be deep and penetrating. When handling possums always be careful not to get bitten, do not put your hands around its mouth. You should always use two hands and be firm but gentle. Adult Ringtail Possums should be gripped by the back of the neck and around the shoulders with one hand and around the base of the tail with the other. This should allow you to control the animal without hurting it and reduces the risk of you being bitten or scratched. -
Museum Occurrence Data Predict Genetic Diversity in a Species-Rich Clade of Australian Lizards Supplementary Online Material
Museum occurrence data predict genetic diversity in a species-rich clade of Australian lizards Supplementary Online Material Sonal Singhal, Huateng Huang, Pascal O. Title, Stephen C. Donnellan, Iris Holmes, Daniel L. Rabosky March 9, 2017 Contents 1 Materials and Methods 2 1.1 Sampling . .2 1.2 Library Preparation and Sequencing . .2 1.3 Testing Methods for ddRAD data assembly . .2 1.4 Species Delimitation . .3 1.5 Measures of Genetic Diversity . .4 1.5.1 Generating Pseudo-reference Genomes . .4 1.5.2 Within-population p ......................................4 1.5.3 Species-wide p .........................................5 1.5.4 mtDNA p ............................................5 1.5.5 Calculating diversity . .5 1.6 Demographic Analyses . .5 1.6.1 Running ADMIXTURE . .5 1.6.2 Running ANGSD . .5 1.6.3 Running LAMARC . .6 1.7 Species Tree . .6 1.8 Collecting data on possible drivers of genetic diversity . .7 1.8.1 Proxies for census population size . .7 1.8.2 Environmental hetereogeneity . .9 1.8.3 Historical demography . .9 1.8.4 Possible confounders . .9 1.9 Model-Testing . 10 2 Figures and Tables 10 2.1 Tables . 10 2.2 Figures . 13 1 1 Materials and Methods 1.1 Sampling This study takes advantage of the numerous tissue samples accessioned in natural history museums across the United States and Australia. In this study, we sampled tissues from 8 museums: Australian Museum, Cornell University Museum of Vertebrates, Australian Biological Tissue Collection, Northern Territory Mu- seum, Queensland Museum, South Australian Museum, University of Michigan Museum of Zoology, and Western Australian Museum. Species boundaries in the genus Ctenotus have been subject to sufficient revi- sion (1), and, like many squamate species, many Ctenotus species contain multiple, cryptic species. -
Calaby References
Abbott, I.J. (1974). Natural history of Curtis Island, Bass Strait. 5. Birds, with some notes on mammal trapping. Papers and Proceedings of the Royal Society of Tasmania 107: 171–74. General; Rodents; Abbott, I. (1978). Seabird islands No. 56 Michaelmas Island, King George Sound, Western Australia. Corella 2: 26–27. (Records rabbit and Rattus fuscipes). General; Rodents; Lagomorphs; Abbott, I. (1981). Seabird Islands No. 106 Mondrain Island, Archipelago of the Recherche, Western Australia. Corella 5: 60–61. (Records bush-rat and rock-wallaby). General; Rodents; Abbott, I. and Watson, J.R. (1978). The soils, flora, vegetation and vertebrate fauna of Chatham Island, Western Australia. Journal of the Royal Society of Western Australia 60: 65–70. (Only mammal is Rattus fuscipes). General; Rodents; Adams, D.B. (1980). Motivational systems of agonistic behaviour in muroid rodents: a comparative review and neural model. Aggressive Behavior 6: 295–346. Rodents; Ahern, L.D., Brown, P.R., Robertson, P. and Seebeck, J.H. (1985). Application of a taxon priority system to some Victorian vertebrate fauna. Fisheries and Wildlife Service, Victoria, Arthur Rylah Institute of Environmental Research Technical Report No. 32: 1–48. General; Marsupials; Bats; Rodents; Whales; Land Carnivores; Aitken, P. (1968). Observations on Notomys fuscus (Wood Jones) (Muridae-Pseudomyinae) with notes on a new synonym. South Australian Naturalist 43: 37–45. Rodents; Aitken, P.F. (1969). The mammals of the Flinders Ranges. Pp. 255–356 in Corbett, D.W.P. (ed.) The natural history of the Flinders Ranges. Libraries Board of South Australia : Adelaide. (Gives descriptions and notes on the echidna, marsupials, murids, and bats recorded for the Flinders Ranges; also deals with the introduced mammals, including the dingo). -
Translocations and Fauna Reconstruction Sites: Western Shield Review—February 2003
108 Conservation Science W. Aust. 5 (2) : 108–121P.R. Mawson (2004) Translocations and fauna reconstruction sites: Western Shield review—February 2003 PETER R. MAWSON1 1Senior Zoologist, Wildlife Branch , Department of Conservation and Land Management, Locked Bag 104 Bentley Delivery Centre WA 6983. [email protected] SUMMARY address this problem, but will result in slower progress towards future milestones for some species. The captive-breeding of western barred bandicoots Objectives has also been hampered by disease issues, but this problem is dealt with in more detail elsewhere in this edition (see The objectives of Western Shield with regard to fauna Morris et al. this issue). translocations were to re-introduce a range of native fauna There is a clear need to better define criteria that will species to a number of sites located primarily in the south- be used to determine the success or failure of translocation west of Western Australia. At some sites whole suites of programs, and for those same criteria to be included in fauna needed to be re-introduced, while at others only Recovery Plans and Interim Recovery Plans. one or a few species were targeted for re-introduction. A small number of the species that are currently the Integration of Western Shield activities with recovery subject of captive-breeding programs and or translocations actions and co-operative arrangements with community do not have Recovery Plans or Interim Recovery Plans, groups, wildlife carers, wildlife sanctuaries, Perth Zoo and contrary to CALM Policy Statement No. 50. In other educational outcomes were other key objectives. cases the priorities by which plans are written does not Achievements reflect the IUCN rank assigned those species by the Western Australian Threatened Species Scientific The fauna translocation objectives defined in the founding Committee. -
Threatened Species Mammals Property Planning Guide
LANDHOLDER SERIES - PROPERTY PLANNING GUIDE LANDHOLDER SERIES THREATENED SPECIES MAMMALS PROPERTY PLANNING GUIDE THREATENED SPECIES - MAMMALS There are 33 native terrestrial and 41 marine The main threats to mammals are via disease (e.g. Facial tumour disease mammals which are known to occur in in Tasmanian Devils, aquatic fungus Mucoramphiborum in Platypus or Tasmania, of these, 7 marine mammals and toxoplasmosis from cats), road kill and predation from foxes and cats. The clearance of native vegetation and inappropriate use of fire are also 3 terrestrial mammals are threatened under contributing to the decline in the range and/or populations of native state and federal law. mammals in Tasmania. EXAMPLES OF THREATENED MAMMALS OF TASMANIA EXAMPLES OF THREATENED MAMMALS OF TASMANIA State status Commonwealth status (TSPA listing) (EPBCA listing) Thylacinus cynocephalus Thylacine X EX Perameles gunnii gunnii Eastern-barred Bandicoot VU Dasyurus maculatus maculatus Spotted-tailed Quoll R VU Pseudomys novaehollandiae New Holland Mouse E VU Sarcophilus harrisii Tasmanian Devil E EN Vombatus ursinus ursinus Common Wombat VU TSPA: E=Endangered, V=Vulnerable. EPBCA: EN=Endangered, CR=Critically Endangered, VU=Vulnerable. See Threatened Species Management Fact sheet for further explanation. TASMANIAN DEVIL There is no doubt that persecution led to the extinction of the Thylacine in Tasmania and the process may have been accelerated by a distemper-type disease. The second largest marsupial carnivore the Tasmanian Devil, whilst also suffering some persecution, exacerbated by road-kill, is now also under dire threat from the facial tumour disease. This species is listed as endangered under both the Tasmanian Threatened Species Protection Act 1995 and Commonwealth Environment Protection and Biodiversity Conservation Act 1999. -
The Western Ringtail Possum (Pseudocheirus Occidentalis)
A major road and an artificial waterway are barriers to the rapidly declining western ringtail possum, Pseudocheirus occidentalis Kaori Yokochi BSc. (Hons.) This thesis is presented for the degree of Doctor of Philosophy of The University of Western Australia School of Animal Biology Faculty of Science October 2015 Abstract Roads are known to pose negative impacts on wildlife by causing direct mortality, habitat destruction and habitat fragmentation. Other kinds of artificial linear structures, such as railways, powerline corridors and artificial waterways, have the potential to cause similar negative impacts. However, their impacts have been rarely studied, especially on arboreal species even though these animals are thought to be highly vulnerable to the effects of habitat fragmentation due to their fidelity to canopies. In this thesis, I studied the effects of a major road and an artificial waterway on movements and genetics of an endangered arboreal species, the western ringtail possum (Pseudocheirus occidentalis). Despite their endangered status and recent dramatic decline, not a lot is known about this species mainly because of the difficulties in capturing them. Using a specially designed dart gun, I captured and radio tracked possums over three consecutive years to study their movement and survival along Caves Road and an artificial waterway near Busselton, Western Australia. I studied the home ranges, dispersal pattern, genetic diversity and survival, and performed population viability analyses on a population with one of the highest known densities of P. occidentalis. I also carried out simulations to investigate the consequences of removing the main causes of mortality in radio collared adults, fox predation and road mortality, in order to identify effective management options. -
Western Bristlebird
RECOVERY OUTLINE Western Bristlebird 1 Family Pardalotidae 2 Scientific name Dasyornis longirostris Gould, 1841 3 Common name Western Bristlebird 4 Conservation status Vulnerable: D2 5 Reasons for listing This species is found at few locations, so is Vulnerable (D2). There is also an argument for listing it as Endangered. The six sub-populations occur over an area of about 200 km2 (B1), and a single fire could cause a decrease in area of occupancy (B2b), quality of habitat (c), number of sub-populations (d) and number of mature individuals (e). Vulnerability to fire could also reduce the fragmented population of about 2,000 (C2a). However, the history of fires within this subspecies’ range over the last 30 years, and the effort being made to prevent fire and its spread, indicate that habitat from one fire will often recover before another large area is burnt, allowing recovery of the 9 Ecology population. Assuming they are of limited extent, fires The Western Bristlebird is terrestrial and sedentary, should only cause a temporary decline, and can be with a preference for dense low heaths. In Two considered part of the natural variation. Status after a People’s Bay Nature Reserve, it lives in dense closed fire, however, would need immediate reassessment. heath 1-1.5 m high. Near Waychinicup R. and in the Fitzgerald R. National Park, the main habitat is closed Estimate Reliability heath 0.5-1 m high, sometimes with scattered patches Extent of occurrence 600 km2 medium of mallee eucalypts, though more open heaths may be trend stable medium used if there are enough patches of dense shrubs in the Area of occupancy 20 km2 low area (McNee, 1986). -
Western Bristlebird)
Consultation Document on Listing Eligibility and Conservation Actions Dasyornis longirostris (western bristlebird) You are invited to provide your views and supporting reasons related to: 1) the eligibility of Dasyornis longirostris (western bristlebird) for inclusion on the EPBC Act threatened species list in the Endangered category; and 2) the necessary conservation actions for the above species. Evidence provided by experts, stakeholders and the general public are welcome. Responses can be provided by any interested person. Anyone may nominate a native species, ecological community or threatening process for listing under the Environment Protection and Biodiversity Conservation Act 1999 (EPBC Act) or for a transfer of an item already on the list to a new listing category. The Threatened Species Scientific Committee (the Committee) undertakes the assessment of species to determine eligibility for inclusion in the list of threatened species and provides its recommendation to the Australian Government Minister for the Environment and Energy. Responses are to be provided in writing either by email to: [email protected] or by mail to: The Director Marine and Freshwater Species Conservation Section Wildlife, Heritage and Marine Division Department of the Environment and Energy PO Box 787 Canberra ACT 2601 Responses are required to be submitted by 19 May 2017. Contents of this information package Page General background information about listing threatened species 2 Information about this consultation process 2 Draft information about the common name and its eligibility for listing 3 Conservation actions for the species 8 Collective list of questions – your views 10 References cited 11 Dasyornis longirostris (western bristlebird) consultation document Page 1 of 11 General background information about listing threatened species The Australian Government helps protect species at risk of extinction by listing them as threatened under Part 13 of the EPBC Act. -
Ba3444 MAMMAL BOOKLET FINAL.Indd
Intot Obliv i The disappearing native mammals of northern Australia Compiled by James Fitzsimons Sarah Legge Barry Traill John Woinarski Into Oblivion? The disappearing native mammals of northern Australia 1 SUMMARY Since European settlement, the deepest loss of Australian biodiversity has been the spate of extinctions of endemic mammals. Historically, these losses occurred mostly in inland and in temperate parts of the country, and largely between 1890 and 1950. A new wave of extinctions is now threatening Australian mammals, this time in northern Australia. Many mammal species are in sharp decline across the north, even in extensive natural areas managed primarily for conservation. The main evidence of this decline comes consistently from two contrasting sources: robust scientifi c monitoring programs and more broad-scale Indigenous knowledge. The main drivers of the mammal decline in northern Australia include inappropriate fi re regimes (too much fi re) and predation by feral cats. Cane Toads are also implicated, particularly to the recent catastrophic decline of the Northern Quoll. Furthermore, some impacts are due to vegetation changes associated with the pastoral industry. Disease could also be a factor, but to date there is little evidence for or against it. Based on current trends, many native mammals will become extinct in northern Australia in the next 10-20 years, and even the largest and most iconic national parks in northern Australia will lose native mammal species. This problem needs to be solved. The fi rst step towards a solution is to recognise the problem, and this publication seeks to alert the Australian community and decision makers to this urgent issue. -
Woylie Or Brush-Tailed Bettong
Woylie Bettongia penicillata ogilbyi Conservation Status: Critically Endangered Identification The brush-tailed bettong Bettongia penicillata is a small kangaroo-like marsupial that was once found throughout much of mainland Australia. The subspecies Bettongia penicillata penicillata, endemic to south-eastern Australia, is considered extinct. Bettongia penicillata ogilbyi, commonly known as the woylie, is the only surviving subspecies and is found in the south- west of Western Australia. Photos: M. Bundock (left); R. McLean (right) Woylies have yellowish grey to reddish brown fur with a pale belly and a long, prehensile tail with a black brush at the end. They have strongly clawed forefeet, used for digging for food and nest making. They move about using all four legs and sometimes also their tail when foraging, but when flushed, they will bound extremely fast on their back legs with the head held low, back arched and tail almost straight. Head and body length: 280-365mm Tail length: 250-360mm Weight: 745-1850g Taxonomy Family: Potoroidae Genus: Bettongia Species: penicillata Subspecies: ogilbyi Other common names: brush-tailed bettong, brush-tailed rat-kangaroo Distribution and Habitat Brush-tailed bettongs were found across most of southern and central Australia prior to European settlement and the introduction of feral cats and foxes. The woylie is endemic to the south-west of WA but they are now only known from two areas: Upper Warren and Dryandra Woodlands. There are also translocated populations at Batalling, and inside fenced areas in Mt Gibson, Karakamia and Whiteman Park and also in New South Wales and South Australia, and on islands in SA.