A Host Beetle Pheromone Regulates Development and Behavior in The
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Assessment of Pathogenic Bacteria Transfer from Pristionchus
Assessment of Pathogenic Bacteria Transfer From Pristionchus Entomophagus (Nematoda: Diplogasteridae) to the Invasive Ant Myrmica Rubra and Its Potential Role in Colony Mortality in Coastal Maine Suzanne Lynn Ishaq ( [email protected] ) School of Food and Agriculture, University of Maine, Orono, ME 04469 https://orcid.org/0000-0002- 2615-8055 Alice Hotopp University of Maine Samantha Silverbrand University of Maine Jonathan E. Dumont Husson University Amy Michaud University of California Davis Jean MacRae University of Maine S. Patricia Stock University of Arizona Eleanor Groden University of Maine Research Article Keywords: bacterial community, biological control, microbial transfer, nematodes, Illumina, Galleria mellonella larvae Posted Date: November 5th, 2020 DOI: https://doi.org/10.21203/rs.3.rs-101817/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/38 Abstract Background: Necromenic nematode Pristionchus entomophagus has been frequently found in nests of the invasive European ant Myrmica rubra in coastal Maine, United States. The nematodes may contribute to ant mortality and collapse of colonies by transferring environmental bacteria. M. rubra ants naturally hosting nematodes were collected from collapsed wild nests in Maine and used for bacteria identication. Virulence assays were carried out to validate acquisition and vectoring of environmental bacteria to the ants. Results: Multiple bacteria species, including Paenibacillus spp., were found in the nematodes’ digestive tract. Serratia marcescens, Serratia nematodiphila, and Pseudomonas uorescens were collected from the hemolymph of nematode-infected Galleria mellonella larvae. Variability was observed in insect virulence in relation to the site origin of the nematodes. In vitro assays conrmed uptake of RFP-labeled Pseudomonas aeruginosa strain PA14 by nematodes. -
Repertoire and Evolution of Mirna Genes in Four Divergent Nematode Species
Downloaded from genome.cshlp.org on September 25, 2021 - Published by Cold Spring Harbor Laboratory Press Resource Repertoire and evolution of miRNA genes in four divergent nematode species Elzo de Wit,1,3 Sam E.V. Linsen,1,3 Edwin Cuppen,1,2,4 and Eugene Berezikov1,2,4 1Hubrecht Institute-KNAW and University Medical Center Utrecht, Cancer Genomics Center, Utrecht 3584 CT, The Netherlands; 2InteRNA Genomics B.V., Bilthoven 3723 MB, The Netherlands miRNAs are ;22-nt RNA molecules that play important roles in post-transcriptional regulation. We have performed small RNA sequencing in the nematodes Caenorhabditis elegans, C. briggsae, C. remanei, and Pristionchus pacificus, which have diverged up to 400 million years ago, to establish the repertoire and evolutionary dynamics of miRNAs in these species. In addition to previously known miRNA genes from C. elegans and C. briggsae we demonstrate expression of many of their homologs in C. remanei and P. pacificus, and identified in total more than 100 novel expressed miRNA genes, the majority of which belong to P. pacificus. Interestingly, more than half of all identified miRNA genes are conserved at the seed level in all four nematode species, whereas only a few miRNAs appear to be species specific. In our compendium of miRNAs we observed evidence for known mechanisms of miRNA evolution including antisense transcription and arm switching, as well as miRNA family expansion through gene duplication. In addition, we identified a novel mode of miRNA evolution, termed ‘‘hairpin shifting,’’ in which an alternative hairpin is formed with up- or downstream sequences, leading to shifting of the hairpin and creation of novel miRNA* species. -
Parallel Adaptation to Higher Temperatures in Divergent Clades of the Nematode 2" Pristionchus Pacificus
bioRxiv preprint doi: https://doi.org/10.1101/096727; this version posted December 29, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1" Parallel adaptation to higher temperatures in divergent clades of the nematode 2" Pristionchus pacificus 3" 4" 5" Mark Leaver1, Merve Kayhan1,2, Angela McGaughran3,4, Christian Rodelsperger3, 6" Anthony A. Hyman1*, Ralf J. Sommer3* 7" 8" 9" 1 Max Planck Institute of Molecular Cell Biology and Genetics, Pfotenhauerstrasse 10" 108, 01307, Dresden, Germany. 11" 2 Bilkent University, Department of Molecular Biology and Genetics, SB 12" Building, 06800 Ankara, Turkey. 13" 3 Max Planck Institute for Developmental Biology, Department of Evolutionary 14" Biology, Spemannstraße 37, 72076, Tübingen, Germany. 15" 4 Australian National University, Research School of Biology, Division of Evolution, 16" Ecology and Genetics, Canberra, ACT, 2601, Australia. 17" * Corresponding authors 18" Key words: Parallelism, reversion, adaptation, natural selection, temperature, 19" Pristionchus pacificus 1 bioRxiv preprint doi: https://doi.org/10.1101/096727; this version posted December 29, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 20" Abstract 21" Studying the effect of temperature on fertility is particularly important in the light of 22" ongoing climate change. We need to know if organisms can adapt to higher 23" temperatures and, if so, what are the evolutionary mechanisms behind such 24" adaptation. Such studies have been hampered by the lack different populations of 25" sufficient sizes with which to relate the phenotype of temperature tolerance to the 26" underlying genotypes. -
Popillia Japonica: Procedures for Official Control
Bulletin OEPP/EPPO Bulletin (2016) 46 (3), 543–555 ISSN 0250-8052. DOI: 10.1111/epp.12345 European and Mediterranean Plant Protection Organization Organisation Europe´enne et Me´diterrane´enne pour la Protection des Plantes PM 9/21(1) National regulatory control systems Systemes de lutte nationaux reglementaires PM 9/21(1) Popillia japonica: procedures for official control Scope Approval and amendment This Standard describes procedures for official control with First approved in 2016-09 the aim of detecting, containing and eradicating Popillia japonica. NPPOs may draw on this guidance when develop- ing national contingency plans for outbreaks of Popillia japonica. Earlier records are likely to be misidentifications and are 1. Introduction most probably Popillia quadriguttata (F.) (EPPO, 2000). Popillia japonica Newman (EPPO Code: POPIJA) (Coleop- Records of the species in China are regarded as invalid or tera: Rutelidae), commonly known as the Japanese beetle, unreliable records. is a highly polyphagous beetle and an EPPO A2 pest (Pot- Within the EPPO region, P. japonica was first identi- ter & Held, 2002; EPPO, 2006). Popillia japonica is listed fied from the island of Terceira in the Azores (PT) in the in Annex IAII of the Directive 2000/29/EC, so any detec- early 1970s, and has since been recorded from the islands tion on consignments entering European Union (EU) Mem- of Faial, Flores, Pico, S~ao Jorge, Corvo and on the west- ber States would be subject to statutory action. Native to ern part of S~ao Miguel (Simoes~ & Martins, 1985; Martins Japan and the far eastern Russian island of Kuril, & Simoes,~ 1986; Vieira, 2008). -
Modeling the Ballistic-To-Diffusive Transition in Nematode Motility
Modeling the ballistic-to-diffusive transition in nematode motility reveals variation in exploratory behavior across species Stephen J. Helms∗1, W. Mathijs Rozemuller∗1, Antonio Carlos Costa∗2, Leon Avery3, Greg J. Stephens2,4, and Thomas S. Shimizu y1 1AMOLF Institute, Amsterdam, The Netherlands 2Dept. of Physics & Astronomy, Vrije Universiteit, Amsterdam, The Netherlands 3Dept. of Physiology and Biophysics, Virginia Commonwealth Univ., Richmond, VA, USA 4Okinawa Institute of Science and Technology, Onna-son, Okinawa, Japan Abstract A quantitative understanding of organism-level behavior requires pre- dictive models that can capture the richness of behavioral phenotypes, yet are simple enough to connect with underlying mechanistic processes. Here we investigate the motile behavior of nematodes at the level of their trans- lational motion on surfaces driven by undulatory propulsion. We broadly sample the nematode behavioral repertoire by measuring motile trajecto- ries of the canonical lab strain C. elegans N2 as well as wild strains and distant species. We focus on trajectory dynamics over timescales span- ning the transition from ballistic (straight) to diffusive (random) move- ment and find that salient features of the motility statistics are captured by a random walk model with independent dynamics in the speed, bear- arXiv:1501.00481v3 [q-bio.NC] 24 Mar 2019 ing and reversal events. We show that the model parameters vary among species in a correlated, low-dimensional manner suggestive of a common mode of behavioral control and a trade-off between exploration and ex- ploitation. The distribution of phenotypes along this primary mode of variation reveals that not only the mean but also the variance varies con- siderably across strains, suggesting that these nematode lineages employ contrasting \bet-hedging" strategies for foraging. -
Fisher Vs. the Worms: Extraordinary Sex Ratios in Nematodes and the Mechanisms That Produce Them
cells Review Fisher vs. the Worms: Extraordinary Sex Ratios in Nematodes and the Mechanisms that Produce Them Justin Van Goor 1,* , Diane C. Shakes 2 and Eric S. Haag 1 1 Department of Biology, University of Maryland, College Park, MD 20742, USA; [email protected] 2 Department of Biology, William and Mary, Williamsburg, VA 23187, USA; [email protected] * Correspondence: [email protected] Abstract: Parker, Baker, and Smith provided the first robust theory explaining why anisogamy evolves in parallel in multicellular organisms. Anisogamy sets the stage for the emergence of separate sexes, and for another phenomenon with which Parker is associated: sperm competition. In outcrossing taxa with separate sexes, Fisher proposed that the sex ratio will tend towards unity in large, randomly mating populations due to a fitness advantage that accrues in individuals of the rarer sex. This creates a vast excess of sperm over that required to fertilize all available eggs, and intense competition as a result. However, small, inbred populations can experience selection for skewed sex ratios. This is widely appreciated in haplodiploid organisms, in which females can control the sex ratio behaviorally. In this review, we discuss recent research in nematodes that has characterized the mechanisms underlying highly skewed sex ratios in fully diploid systems. These include self-fertile hermaphroditism and the adaptive elimination of sperm competition factors, facultative parthenogenesis, non-Mendelian meiotic oddities involving the sex chromosomes, and Citation: Van Goor, J.; Shakes, D.C.; Haag, E.S. Fisher vs. the Worms: environmental sex determination. By connecting sex ratio evolution and sperm biology in surprising Extraordinary Sex Ratios in ways, these phenomena link two “seminal” contributions of G. -
Pristionchus Pacificus* §
Pristionchus pacificus* § Ralf J. Sommer , Max-Planck Institut für Entwicklungsbiologie, Abteilung Evolutionsbiologie, D-72076 Tübingen, Germany Table of Contents 1. Biology ..................................................................................................................................1 2. Developmental biology ............................................................................................................. 3 3. Phylogeny ..............................................................................................................................3 4. Ecology .................................................................................................................................3 5. Genetics .................................................................................................................................4 5.1. Formal genetics and sex determination .............................................................................. 4 5.2. Nomenclature ............................................................................................................... 5 6. Genomics ...............................................................................................................................5 6.1. Macrosynteny: chromosome homology and genome size ...................................................... 5 6.2. Microsynteny ............................................................................................................... 6 6.3. Trans-splicing .............................................................................................................. -
Grubs / Scarab Beetles Know Thy Enemy: White Grubs / Scarab Beetles • Scarab Beetles (Scarabaeidae) Are Part of the Coleoptera Order (General Beetles)
A Novel, Effective Approach to Grub Control That is Safe for Pollinators, People, Animals and the Environment with EPA Exemptions in CT Joe Magazzi, MS President Outline WHAT? WHY? HOW? Know Thy Enemy: White Grubs / Scarab Beetles Know Thy Enemy: White Grubs / Scarab Beetles • Scarab Beetles (Scarabaeidae) are part of the Coleoptera order (General Beetles). • There are about 30,000 scarab species comprising about 10 percent of all known beetles. The term “white grub” is the immature or larval form of the scarab beetle. • Most consume live plants, fruits and vegetable and are considered agricultural pests with a large negative economic impact. In Connecticut, the most prevalent and damaging species are: Japanese beetles, European chafers, Asiatic garden beetles, Oriental beetles, Northern masked chafer Know Thy Enemy: White Grubs / Scarab Beetles Economic Impact • “White grubs are the most damaging group of turf grass insect pests in our region”…Connecticut IPM Annual Report from UCONN in 2013. • According to a USDA/APHIS report in 2000, about $156 million is spent in the US annually renovating or replacing damaged turf or ornamental plants. • That same report from 2000 estimated that $460 million is spent each year to control the grubs and adults. • Today, the economic impact is likely higher than it was 16 years ago. • These numbers are only for the Japanese beetle – total white grub & adult beetle damage is likely in the billions. Know Thy Enemy: Beetle Life Cycles From Cornell University Integrated Pest Management Program (www.nysipm.cornell.edu/publications/grubs/life.asp) beetleGONE! & grubGONE! (Bacillus thuringiensis) & The Cry Proteins: An Introduction & Mode of Action Against Grubs & Beetles “The Enemy of My Enemy is My Friend” Bacillus thuringiensis (Bt) • Bacteria first isolated in 1901 by Ishiwatari from diseased silkworms and again by Berliner from diseased flour moth larvae in 1911. -
"Structure, Function and Evolution of the Nematode Genome"
Structure, Function and Advanced article Evolution of The Article Contents . Introduction Nematode Genome . Main Text Online posting date: 15th February 2013 Christian Ro¨delsperger, Max Planck Institute for Developmental Biology, Tuebingen, Germany Adrian Streit, Max Planck Institute for Developmental Biology, Tuebingen, Germany Ralf J Sommer, Max Planck Institute for Developmental Biology, Tuebingen, Germany In the past few years, an increasing number of draft gen- numerous variations. In some instances, multiple alter- ome sequences of multiple free-living and parasitic native forms for particular developmental stages exist, nematodes have been published. Although nematode most notably dauer juveniles, an alternative third juvenile genomes vary in size within an order of magnitude, com- stage capable of surviving long periods of starvation and other adverse conditions. Some or all stages can be para- pared with mammalian genomes, they are all very small. sitic (Anderson, 2000; Community; Eckert et al., 2005; Nevertheless, nematodes possess only marginally fewer Riddle et al., 1997). The minimal generation times and the genes than mammals do. Nematode genomes are very life expectancies vary greatly among nematodes and range compact and therefore form a highly attractive system for from a few days to several years. comparative studies of genome structure and evolution. Among the nematodes, numerous parasites of plants and Strikingly, approximately one-third of the genes in every animals, including man are of great medical and economic sequenced nematode genome has no recognisable importance (Lee, 2002). From phylogenetic analyses, it can homologues outside their genus. One observes high rates be concluded that parasitic life styles evolved at least seven of gene losses and gains, among them numerous examples times independently within the nematodes (four times with of gene acquisition by horizontal gene transfer. -
Masked Chafer (Coleoptera: Scarabaeidae) Grubs in Turfgrass
Journal of Integrated Pest Management (2016) 7(1): 3; 1–11 doi: 10.1093/jipm/pmw002 Profile Biology, Ecology, and Management of Masked Chafer (Coleoptera: Scarabaeidae) Grubs in Turfgrass S. Gyawaly,1,2 A. M. Koppenho¨fer,3 S. Wu,3 and T. P. Kuhar1 1Virginia Tech, Department of Entomology, 216 Price Hall, Blacksburg, VA 24061-0319 ([email protected]; [email protected]), 2Corresponding author, e-mail: [email protected], and 3Rutgers University, Department of Entomology, Thompson Hall, 96 Lipman Drive, New Brunswick, NJ 08901-8525 ([email protected]; [email protected]) Received 22 October 2015; Accepted 11 January 2016 Abstract Downloaded from Masked chafers are scarab beetles in the genus Cyclocephala. Their larvae (white grubs) are below-ground pests of turfgrass, corn, and other agricultural crops. In some regions, such as the Midwestern United States, they are among the most important pest of turfgrass, building up in high densities and consuming roots below the soil/thatch interface. Five species are known to be important pests of turfgrass in North America, including northern masked chafer, Cyclocephala borealis Arrow; southern masked chafer, Cyclocephala lurida Bland [for- http://jipm.oxfordjournals.org/ merly Cyclocephala immaculata (Olivier)]; Cyclocephala pasadenae (Casey); Cyclocephala hirta LeConte; and Cyclocephala parallela Casey. Here we discuss their life history, ecology, and management. Key words: Turfgrass IPM, white grub, Cyclocephala, masked chafer Many species of scarabs are pests of turfgrass in the larval stage southern Ohio, and Maryland. The two species have overlapping (Table 1). Also known as white grubs, larvae of these species feed distributions throughout the Midwest, particularly in the central on grass roots and damage cultivated turfgrasses. -
Species-Specific Recognition of Beetle Cues by the Nematode Pristionchus Maupasi
EVOLUTION & DEVELOPMENT 10:3, 273–279 (2008) Species-specific recognition of beetle cues by the nematode Pristionchus maupasi RayL.Hong,a Alesˇ Svatosˇ,b Matthias Herrmann,a and Ralf J. Sommera,Ã aDepartment for Evolutionary Biology, Max-Planck Institute for Developmental Biology, Tuebingen, Germany bMax-Planck Institute for Chemical Ecology, Mass Spectrometry Research Group, Jena, Germany ÃAuthor for correspondence (email: [email protected]) SUMMARY The environment has a strong effect on studies originally established in Caenorhabditis elegans.We development as is best seen in the various examples of observed that P. maupasi is exclusively attracted to phenol, phenotypic plasticity. Besides abiotic factors, the interactions one of the sex attractants of Melolontha beetles, and that between organisms are part of the adaptive forces shaping the attraction was also observed when washes of adult beetles evolution of species. To study how ecology influences were used instead of pure compounds. Furthermore, development, model organisms have to be investigated in P. maupasi chemoattraction to phenol synergizes with plant their environmental context. We have recently shown that the volatiles such as the green leaf alcohol and linalool, nematode Pristionchus pacificus and its relatives are closely demonstrating that nematodes can integrate distinct associated with scarab beetles with a high degree of species chemical senses from multiple trophic levels. In contrast, specificity. For example, P. pacificus is associated with the another cockchafer-associated nematode, Diplogasteriodes oriental beetle Exomala orientalis in Japan and the magnus, was not strongly attracted to phenol. We conclude northeastern United States, whereas Pristionchus maupasi that interception of the insect communication system might be is primarily isolated from cockchafers of the genus Melolontha a recurring strategy of Pristionchus nematodes but that in Europe. -
An Introduction to the UCSC Genome Browser* Raymond Lee§ Division of Biology, California Institute of Technology, Pasadena CA 91125, USA
An introduction to the UCSC Genome Browser* Raymond Lee§ Division of Biology, California Institute of Technology, Pasadena CA 91125, USA The Genome Browser at the University of California Santa Cruz provides a uniform graphical interface to sequences, features, and annotations of genomes across a wide spectrum of organisms, from yeast to humans. In particular, it covers seven nematode genomes: Caenorhabditis elegans, C. sp. 11, C. brenneri, C. briggsae, C. remanei, C. japonica, and Pristionchus pacificus and thus is particularly useful for multiple-genome comparative analysis. One can use the provided tools and visual aides to facilitate sequence feature detection and examination. This article provides a brief introduction for using the Genome Browser from the perspective of a C. elegans researcher. Interested users should read the official user guide and explore the site more deeply as there are many more features not mentioned here. To begin, one should choose the nematode clade, then the organism C. elegans, a version of genome sequence assembly (e.g., WS220), and a region of the genome (Figure 1). Browser behavior is context sensitive, depending on the choices made in order from left to right. There are three basic ways to specify a region to browse: by a range of chromosomal numerical positions, by a gene name and by an accession number. More flexibly, instead of exact positions, one can also search for a descriptive term (such as “kinase inhibitor”) that is present in gene records. Some restrictions are worth noting. Chromosome positions must start with “chr”. Gene names recognized by the browser are limited to those in RefSeq and Ensembl entries.