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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
State of New York City's Plants 2018
STATE OF NEW YORK CITY’S PLANTS 2018 Daniel Atha & Brian Boom © 2018 The New York Botanical Garden All rights reserved ISBN 978-0-89327-955-4 Center for Conservation Strategy The New York Botanical Garden 2900 Southern Boulevard Bronx, NY 10458 All photos NYBG staff Citation: Atha, D. and B. Boom. 2018. State of New York City’s Plants 2018. Center for Conservation Strategy. The New York Botanical Garden, Bronx, NY. 132 pp. STATE OF NEW YORK CITY’S PLANTS 2018 4 EXECUTIVE SUMMARY 6 INTRODUCTION 10 DOCUMENTING THE CITY’S PLANTS 10 The Flora of New York City 11 Rare Species 14 Focus on Specific Area 16 Botanical Spectacle: Summer Snow 18 CITIZEN SCIENCE 20 THREATS TO THE CITY’S PLANTS 24 NEW YORK STATE PROHIBITED AND REGULATED INVASIVE SPECIES FOUND IN NEW YORK CITY 26 LOOKING AHEAD 27 CONTRIBUTORS AND ACKNOWLEGMENTS 30 LITERATURE CITED 31 APPENDIX Checklist of the Spontaneous Vascular Plants of New York City 32 Ferns and Fern Allies 35 Gymnosperms 36 Nymphaeales and Magnoliids 37 Monocots 67 Dicots 3 EXECUTIVE SUMMARY This report, State of New York City’s Plants 2018, is the first rankings of rare, threatened, endangered, and extinct species of what is envisioned by the Center for Conservation Strategy known from New York City, and based on this compilation of The New York Botanical Garden as annual updates thirteen percent of the City’s flora is imperiled or extinct in New summarizing the status of the spontaneous plant species of the York City. five boroughs of New York City. This year’s report deals with the City’s vascular plants (ferns and fern allies, gymnosperms, We have begun the process of assessing conservation status and flowering plants), but in the future it is planned to phase in at the local level for all species. -
Introduction to Common Native & Invasive Freshwater Plants in Alaska
Introduction to Common Native & Potential Invasive Freshwater Plants in Alaska Cover photographs by (top to bottom, left to right): Tara Chestnut/Hannah E. Anderson, Jamie Fenneman, Vanessa Morgan, Dana Visalli, Jamie Fenneman, Lynda K. Moore and Denny Lassuy. Introduction to Common Native & Potential Invasive Freshwater Plants in Alaska This document is based on An Aquatic Plant Identification Manual for Washington’s Freshwater Plants, which was modified with permission from the Washington State Department of Ecology, by the Center for Lakes and Reservoirs at Portland State University for Alaska Department of Fish and Game US Fish & Wildlife Service - Coastal Program US Fish & Wildlife Service - Aquatic Invasive Species Program December 2009 TABLE OF CONTENTS TABLE OF CONTENTS Acknowledgments ............................................................................ x Introduction Overview ............................................................................. xvi How to Use This Manual .................................................... xvi Categories of Special Interest Imperiled, Rare and Uncommon Aquatic Species ..................... xx Indigenous Peoples Use of Aquatic Plants .............................. xxi Invasive Aquatic Plants Impacts ................................................................................. xxi Vectors ................................................................................. xxii Prevention Tips .................................................... xxii Early Detection and Reporting -
Conserving Europe's Threatened Plants
Conserving Europe’s threatened plants Progress towards Target 8 of the Global Strategy for Plant Conservation Conserving Europe’s threatened plants Progress towards Target 8 of the Global Strategy for Plant Conservation By Suzanne Sharrock and Meirion Jones May 2009 Recommended citation: Sharrock, S. and Jones, M., 2009. Conserving Europe’s threatened plants: Progress towards Target 8 of the Global Strategy for Plant Conservation Botanic Gardens Conservation International, Richmond, UK ISBN 978-1-905164-30-1 Published by Botanic Gardens Conservation International Descanso House, 199 Kew Road, Richmond, Surrey, TW9 3BW, UK Design: John Morgan, [email protected] Acknowledgements The work of establishing a consolidated list of threatened Photo credits European plants was first initiated by Hugh Synge who developed the original database on which this report is based. All images are credited to BGCI with the exceptions of: We are most grateful to Hugh for providing this database to page 5, Nikos Krigas; page 8. Christophe Libert; page 10, BGCI and advising on further development of the list. The Pawel Kos; page 12 (upper), Nikos Krigas; page 14: James exacting task of inputting data from national Red Lists was Hitchmough; page 16 (lower), Jože Bavcon; page 17 (upper), carried out by Chris Cockel and without his dedicated work, the Nkos Krigas; page 20 (upper), Anca Sarbu; page 21, Nikos list would not have been completed. Thank you for your efforts Krigas; page 22 (upper) Simon Williams; page 22 (lower), RBG Chris. We are grateful to all the members of the European Kew; page 23 (upper), Jo Packet; page 23 (lower), Sandrine Botanic Gardens Consortium and other colleagues from Europe Godefroid; page 24 (upper) Jože Bavcon; page 24 (lower), Frank who provided essential advice, guidance and supplementary Scumacher; page 25 (upper) Michael Burkart; page 25, (lower) information on the species included in the database. -
Environmental Weeds of Coastal Plains and Heathy Forests Bioregions of Victoria Heading in Band
Advisory list of environmental weeds of coastal plains and heathy forests bioregions of Victoria Heading in band b Advisory list of environmental weeds of coastal plains and heathy forests bioregions of Victoria Heading in band Advisory list of environmental weeds of coastal plains and heathy forests bioregions of Victoria Contents Introduction 1 Purpose of the list 1 Limitations 1 Relationship to statutory lists 1 Composition of the list and assessment of taxa 2 Categories of environmental weeds 5 Arrangement of the list 5 Column 1: Botanical Name 5 Column 2: Common Name 5 Column 3: Ranking Score 5 Column 4: Listed in the CALP Act 1994 5 Column 5: Victorian Alert Weed 5 Column 6: National Alert Weed 5 Column 7: Weed of National Significance 5 Statistics 5 Further information & feedback 6 Your involvement 6 Links 6 Weed identification texts 6 Citation 6 Acknowledgments 6 Bibliography 6 Census reference 6 Appendix 1 Environmental weeds of coastal plains and heathy forests bioregions of Victoria listed alphabetically within risk categories. 7 Appendix 2 Environmental weeds of coastal plains and heathy forests bioregions of Victoria listed by botanical name. 19 Appendix 3 Environmental weeds of coastal plains and heathy forests bioregions of Victoria listed by common name. 31 Advisory list of environmental weeds of coastal plains and heathy forests bioregions of Victoria i Published by the Victorian Government Department of Sustainability and Environment Melbourne, March2008 © The State of Victoria Department of Sustainability and Environment 2009 This publication is copyright. No part may be reproduced by any process except in accordance with the provisions of the Copyright Act 1968. -
Population Study of Greater Snow Geese on Bylot Island (Nunavut) in 2003: a Progress Report
POPULATION STUDY OF GREATER SNOW GEESE ON BYLOT ISLAND (NUNAVUT) IN 2003: A PROGRESS REPORT Gilles Gauthier Département de biologie & Centre d'études nordiques Université Laval, Québec Austin Reed Canadian Wildlife Service Environment Canada, Québec Jean-François Giroux Département des sciences biologiques Université du Québec à Montréal Dominique Berteaux Département de biologie, chimie et sciences de la santé & Centre d’études nordiques Université du Québec à Rimouski Marie-Christine Cadieux Département de biologie & Centre d’études nordiques Université Laval, Québec 18 November 2003 Gauthier, Reed, Giroux, Berteaux & Cadieux • 2003 progress report of Bylot Island goose project 2 INTRODUCTION In 2003, we continued our long-term study of the population dynamics of Greater Snow Geese (Chen caerulescens atlantica) and of the interactions between geese, plants and their predators on Bylot Island. Like many goose populations worldwide, Greater Snow Geese have increased considerably during the late XXth century (annual growth rate of ~10%). The exploding population of snow geese has imposed considerable stress on its breeding habitat, while extensive use of agriculture lands provides an unlimited source of food during winter and migratory stopovers for them. Remedial management during autumn, winter and spring has been undertaken since 1999 to curb the growth of this population. The long-term objectives of this project are to (1) study changes in the demographic parameters of the Greater Snow Goose population, and especially the effects of the recent spring conservation hunt, (2) determine the role of food availability and fox predation in limiting annual production of geese, and (3) monitor the impact of grazing on the vegetation of Bylot Island. -
Phylogeny and Phylogenetic Taxonomy of Dipsacales, with Special Reference to Sinadoxa and Tetradoxa (Adoxaceae)
PHYLOGENY AND PHYLOGENETIC TAXONOMY OF DIPSACALES, WITH SPECIAL REFERENCE TO SINADOXA AND TETRADOXA (ADOXACEAE) MICHAEL J. DONOGHUE,1 TORSTEN ERIKSSON,2 PATRICK A. REEVES,3 AND RICHARD G. OLMSTEAD 3 Abstract. To further clarify phylogenetic relationships within Dipsacales,we analyzed new and previously pub- lished rbcL sequences, alone and in combination with morphological data. We also examined relationships within Adoxaceae using rbcL and nuclear ribosomal internal transcribed spacer (ITS) sequences. We conclude from these analyses that Dipsacales comprise two major lineages:Adoxaceae and Caprifoliaceae (sensu Judd et al.,1994), which both contain elements of traditional Caprifoliaceae.Within Adoxaceae, the following relation- ships are strongly supported: (Viburnum (Sambucus (Sinadoxa (Tetradoxa, Adoxa)))). Combined analyses of C ap ri foliaceae yield the fo l l ow i n g : ( C ap ri folieae (Diervilleae (Linnaeeae (Morinaceae (Dipsacaceae (Triplostegia,Valerianaceae)))))). On the basis of these results we provide phylogenetic definitions for the names of several major clades. Within Adoxaceae, Adoxina refers to the clade including Sinadoxa, Tetradoxa, and Adoxa.This lineage is marked by herbaceous habit, reduction in the number of perianth parts,nectaries of mul- ticellular hairs on the perianth,and bifid stamens. The clade including Morinaceae,Valerianaceae, Triplostegia, and Dipsacaceae is here named Valerina. Probable synapomorphies include herbaceousness,presence of an epi- calyx (lost or modified in Valerianaceae), reduced endosperm,and distinctive chemistry, including production of monoterpenoids. The clade containing Valerina plus Linnaeeae we name Linnina. This lineage is distinguished by reduction to four (or fewer) stamens, by abortion of two of the three carpels,and possibly by supernumerary inflorescences bracts. Keywords: Adoxaceae, Caprifoliaceae, Dipsacales, ITS, morphological characters, phylogeny, phylogenetic taxonomy, phylogenetic nomenclature, rbcL, Sinadoxa, Tetradoxa. -
Imprints of Independent Allopolyploid Formations On
Chen et al. BMC Genomics (2021) 22:264 https://doi.org/10.1186/s12864-021-07566-6 RESEARCH ARTICLE Open Access Imprints of independent allopolyploid formations on patterns of gene expression in two sibling yarrow species (Achillea, Asteraceae) Duo Chen1†, Peng-Cheng Yan2† and Yan-Ping Guo1* Abstract Background: Polyploid species often originate recurrently. While this is well known, there is little information on the extent to which distinct allotetraploid species formed from the same parent species differ in gene expression. The tetraploid yarrow species Achillea alpina and A. wilsoniana arose independently from allopolyploidization between diploid A. acuminata and A. asiatica. The genetics and geography of these origins are clear from previous studies, providing a solid basis for comparing gene expression patterns of sibling allopolyploid species that arose independently. Results: We conducted comparative RNA-sequencing analyses on the two Achillea tetraploid species and their diploid progenitors to evaluate: 1) species-specific gene expression and coexpression across the four species; 2) patterns of inheritance of parental gene expression; 3) parental contributions to gene expression in the allotetraploid species, and homeolog expression bias. Diploid A. asiatica showed a higher contribution than diploid A. acuminata to the transcriptomes of both tetraploids and also greater homeolog bias in these transcriptomes, possibly reflecting a maternal effect. Comparing expressed genes in the two allotetraploids, we found expression of ca. 30% genes were species-specific in each, which were most enriched for GO terms pertaining to “defense response”. Despite species-specific and differentially expressed genes between the two allotetraploids, they display similar transcriptome changes in comparison to their diploid progenitors. -
Notes on Grasses (Poaceae) for the Flora of China, VI. New Combinations in Stipeae and Anthoxanthum Author(S): Sylvia M
Notes on Grasses (Poaceae) for the Flora of China, VI. New Combinations in Stipeae and Anthoxanthum Author(s): Sylvia M. Phillips and Wu Zhen-Lan Source: Novon, Vol. 15, No. 3 (Sep., 2005), pp. 474-476 Published by: Missouri Botanical Garden Press Stable URL: http://www.jstor.org/stable/3393497 Accessed: 21-07-2016 02:11 UTC Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at http://about.jstor.org/terms JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Missouri Botanical Garden Press is collaborating with JSTOR to digitize, preserve and extend access to Novon This content downloaded from 159.226.89.2 on Thu, 21 Jul 2016 02:11:29 UTC All use subject to http://about.jstor.org/terms Notes on Grasses (Poaceae) for the Flora of China, VI. New Combinations in Stipeae and Anthoxanthum S+-lvia;V. Phillips Herbarium, Royal Botanic Gardens, Keu. Surrey TB79 3ABt United Kingdom. [email protected] Wu Zhen-LvIrl Herbarium, Northwest Plateau Institute of Biolog!. \(aclemia Sinica, 78 Xiguan Street, Xining, Qinghai 810()01. China ABSTRACT. When Or^zopsis is e onfined to the tv^)e gelleIic reassessmellt for North America and w-ith species, Chinese species are placed in Achrlathe- ollal-)oIatoIs folloss-ed this uith a report on molec- rum and Piptatherum. -
In-Vitro Cardiovascular Protective Activity of a New Achillinoside from Achillea Alpina
Revista Brasileira de Farmacognosia 29 (2019) 445–448 ww w.elsevier.com/locate/bjp Original Article In-vitro cardiovascular protective activity of a new achillinoside from Achillea alpina ∗ Fei Zhou , Song Li , Jian Yang , Jiawang Ding , Chao He , Lin Teng Institute of Cardiovascular Diseases, The First College of Clinical Medical Sciences, China Three Gorges University, Yichang, Hubei, PR China a a b s t r a c t r t i c l e i n f o Article history: Achillinoside was isolated from methanol extract of Achillea alpina L., Asteraceae. The structure of the com- Received 28 August 2018 pound was characterized based on various spectrum data, including IR, HR-ESI-MS, 1D and 2D NMR. The Accepted 25 February 2019 cardiovascular protective effect of achillinoside was tested on H2O2-induced H9c2 cells. In our research, Available online 27 March 2019 achillinoside could increase the cell viability dose-dependently in H2O2-induced H9c2 cells. In addition, the levels of caspase-3/9 cells were significantly decreased in H2O2 and achillinoside incubated H9c2 Keywords: cells. Achillinoside © 2019 Sociedade Brasileira de Farmacognosia. Published by Elsevier Editora Ltda. This is an open Apoptosis inhibition access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Spectroscopic analysis H9c2 cells Introduction because H9c2 cell keeps the main characteristics of primary car- diomyocytes in vivo (Silva et al., 2010; Watkins et al., 2011). Herein The genus Achillea, Asteraceae, consists of 85 species around we describe the isolation and structure elucidation of the com- the world, and mainly distributed in eastern and southern Asia. -
Species List For: Engelmann Woods NA 174 Species
Species List for: Engelmann Woods NA 174 Species Franklin County Date Participants Location NA List NA Nomination List List made by Maupin and Kurz, 9/9/80, and 4/21/93 WGNSS Lists Webster Groves Nature Study Society Fieldtrip Participants WGNSS Vascular Plant List maintained by Steve Turner Species Name (Synonym) Common Name Family COFC COFW Acalypha virginica Virginia copperleaf Euphorbiaceae 2 3 Acer negundo var. undetermined box elder Sapindaceae 1 0 Acer saccharum var. undetermined sugar maple Sapindaceae 5 3 Achillea millefolium yarrow Asteraceae/Anthemideae 1 3 Actaea pachypoda white baneberry Ranunculaceae 8 5 Adiantum pedatum var. pedatum northern maidenhair fern Pteridaceae Fern/Ally 6 1 Agastache nepetoides yellow giant hyssop Lamiaceae 4 3 Ageratina altissima var. altissima (Eupatorium rugosum) white snakeroot Asteraceae/Eupatorieae 2 3 Agrimonia rostellata woodland agrimony Rosaceae 4 3 Ambrosia artemisiifolia common ragweed Asteraceae/Heliantheae 0 3 Ambrosia trifida giant ragweed Asteraceae/Heliantheae 0 -1 Amelanchier arborea var. arborea downy serviceberry Rosaceae 6 3 Antennaria parlinii var. undetermined (A. plantaginifolia) plainleaf pussytoes Asteraceae/Gnaphalieae 5 5 Aplectrum hyemale putty root Orchidaceae 8 1 Aquilegia canadensis columbine Ranunculaceae 6 1 Arisaema triphyllum ssp. triphyllum (A. atrorubens) Jack-in-the-pulpit Araceae 6 -2 Aristolochia serpentaria Virginia snakeroot Aristolochiaceae 6 5 Arnoglossum atriplicifolium (Cacalia atriplicifolia) pale Indian plantain Asteraceae/Senecioneae 4 5 Arnoglossum reniforme (Cacalia muhlenbergii) great Indian plantain Asteraceae/Senecioneae 8 5 Asarum canadense wild ginger Aristolochiaceae 6 5 Asclepias quadrifolia whorled milkweed Asclepiadaceae 6 5 Asimina triloba pawpaw Annonaceae 5 0 Asplenium rhizophyllum (Camptosorus) walking fern Aspleniaceae Fern/Ally 7 5 Asplenium trichomanes ssp. trichomanes maidenhair spleenwort Aspleniaceae Fern/Ally 9 5 Srank: SU Grank: G? * Barbarea vulgaris yellow rocket Brassicaceae 0 0 Blephilia hirsuta var.