A2) United States Patent (0) Patent No.: US 9,078,919 B2 Olsonet Al

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A2) United States Patent (0) Patent No.: US 9,078,919 B2 Olsonet Al US009078919B2 a2) United States Patent (0) Patent No.: US 9,078,919 B2 Olsonet al. (45) Date of Patent: *Jul. 14, 2015 (54) MICRO-RNAS OF THE MIR-15 FAMILY 2005/0182011 Al 8/2005 Olson etal. MODULATE CARDIOMYOCYTE SURVIVAL 2006/0058266 Al 3/2006 Manoharan etal. AND CARDIAC REPAIR 2006/0105360 Al 5/2006 Croce etal. 2006/0165659 Al 7/2006 Croceet al. 2006/0185027 Al 8/2006 Bartelet al. (71) Applicant: The Board of Regents, The University 2006/0189557 Al 8/2006 Slack et al. of Texas System, Austin, TX (US) 2006/0247193 Al 11/2006 Taira et al. 2006/0252722 Al 11/2006 Lollo et al. (72) Inventors: Eric N. Olson, Dallas, TX (US); Eva 2007/0026403 Al 2/2007 Hatzigeorgiouetal. 2007/0054287 Al 3/2007 Bloch van Rooij, Utrecht (NL) 2007/0213292 Al 9/2007 Stoffel et al. 2007/0259827 Al 11/2007 Aronin et al. (73) Assignee: The Board of Regents, the University 2007/0287179 Al 12/2007 Tuschletal. of Texas System, Austin, TX (US) 2007/0292878 Al 12/2007 Raymond. 2008/0050744 Al 2/2008 Brownetal. (*) Notice: Subject to any disclaimer, the term of this 2008/0176766 Al 7/2008 Brownetal. 2008/0220423 Al 9/2008 Molleret al. patent is extended or adjusted under 35 2009/0053718 Al 2/2009 Naguibnevaetal. U.S.C. 154(b) by 0 days. 2009/0092980 Al 4/2009 Arenzet al. 2009/0131356 Al 5/2009 Baderet al. This patent is subject to a terminal dis- 2009/0176723 Al 7/2009 Brownetal. claimer. 2009/0214477 Al 8/2009 Betzet al. 2009/0221685 Al 9/2009 Esauetal. (21) Appl. No.: 13/970,379 2009/0226528 Al 9/2009 Czechet al. 2009/0281167 Al 11/2009 Shenetal. (22) Filed: Aug. 19, 2013 2009/0286969 Al 11/2009 Esauet al. 2009/0286973 Al 11/2009 Manoharan etal. 2009/0291906 Al 11/2009 Esauet al. (65) Prior Publication Data 2009/0291907 Al 11/2009 Esauet al. US 2014/0051745 Al Feb. 20, 2014 2009/0293148 Al 11/2009 Renetal. 2009/0298174 Al 12/2009 Esauet al. 2009/0306181 Al 12/2009 Ikedaet al. 2009/0326049 Al 12/2009 Aristarkhovet al. Related U.S. Application Data 2010/0029003 Al 2/2010 Bartel et al. 2010/0069471 Al 3/2010 Manoharan etal. (63) Continuation of application No. 12/742,233, filed as 2010/0087512 Al 4/2010 Tuschletal. application No. PCT/US2008/083020 on Nov. 10, 2010/0087513 Al 4/2010 Tuschletal. 2008, now Pat. No. 8,513,209. (Continued) (60) Provisional application No. 60/986,798,filed on Nov. 9, 2007. FOREIGN PATENT DOCUMENTS (51) Int. Cl. EP 1627925 Al 2/2006 AG6IK 48/00 (2006.01) EP 1676914 Al 7/2006 AGIK 45/06 (2006.01) (Continued) AOIK 67/027 (2006.01) CIIN 15/113 (2010.01) OTHER PUBLICATIONS AGIK 31/7105 (2006.01) (52) U.S.C Young, “International Search Report,” 4 pages, from International CPC veeceseseeee A61K 45/06 (2013.01); AOLK 67/0275 Patent Application No. PCT/US08/83020, USPTO, Alexandria, Vir- (2013.01); A6LK 31/7105 (2013.01); C12N ginia, US (mailed May 13, 2009). 15/113 (2013.01); AOLK 2207/05 (2013.01); (Continued) AOLK 2217/058 (2013.01); AOLK 2227/105 (2013.01); AOLK 2267/0375 (2013.01); C12N 2310/113 (2013.01); CI2N 2310/14 (2013.01); Primary Examiner — Kimberly Chong C12N 2330/10 (2013.01); C12N 2830/008 (2013.01) (74) Attorney, Agent, or Firm — Cooley LLP (58) Field of Classification Search None (57) ABSTRACT See application file for complete search history. A family of microRNAs, called the miR-15 family, which (56) References Cited includes miR-195, are shown to be up-regulated during U.S. PATENT DOCUMENTS pathological cardiac remodeling and repress the expression of mRNAsrequired for cell proliferation and survival, with 7,232,806 B2 6/2007 Tuschletal. consequent loss of cardiomyocytes. Strategies to block 7,482,117 B2 1/2009 Cargill et al. expression ofthe miR-15 family in the heart as a treatment for 7,582,744 B2 9/2009 Manoharan et al. diverse cardiac disease are provided. 7,759,319 B2 7/2010 Lollo et al. 2005/0026169 Al 2/2005 Cargill et al. 2005/0059005 Al 3/2005 Tuschlet al. 2005/0075492 Al 4/2005 Chenetal. 18 Claims, 9 Drawing Sheets US 9,078,919 B2 Page 2 (56) References Cited WO WO2008/061537 A2 5/2008 WO _-WO 2008/073920 A2 —-6/2008 — U.S. PATENT DOCUMENTS WO WO 2008/073921 A2 6/2008 WO WO 2008/073922 A2 6/2008 2010/0093837 Al 4/2010 Tuschlet al. WO WO 2008/073923 A2 6/2008 —_ 2010/0099748 Al 4/2010 Tuschlet al. WO WO 2008/074328 A2 6/2008 2010/0113284 Al 5/2010 Aristarkhovet al. WO WO 2008/085797 A2 7/2008 2010/0113561 Al 5/2010 Tuschlet al. WO WO 2008/112226 A2 —_-9/2008 WO WO 2008/116267 Al 10/2008 — WO WO 2008/147430 A2 12/2008 — FOREIGN PATENT DOCUMENTS WO WO 2008/147839 Al 12/2008 — WO WO 2009/012263 A2 1/2009 EP 1777301 A2 4/2007 WO WO 2009/043353 A2 4/2009 EP 1959012 A2 8/2008 WO WO 2009/044895 Al 4/2009 EP 2105145 Al 9/2009 WO WO 2009/058818 A2 5/2009 EP 2113567 Al 11/2009 WO WO 2009/062169 A2 5/2009 JP 2006-506469 2/2006 WO WO 2009/121031 Al 10/2009 JP 2006-5 19008 8/2006 WO WO 2009/149182 Al 12/2009 JP 2006-292367 10/2006 WO WO 2010/036939 A2 4/2010 WO WO 03/029459 A2 4/2003 WO WO 2010/048585 A2 4/2010 WO WO 03/093441 A2 11/2003 WO WO 2004/043387 A2 5/2004 OTHER PUBLICATIONS WO WO 2004/076622 A2 9/2004 WO WO 2005/013901 A2 2/2005 Lagos-Quintanaet al., “New microRNAsfrom mouse and. human,” Wo WO 2005/017145 Al 2/2005 WO WO 2005/040419 Al 5/2005 RNA,vol. 9:175-179, 2003. — Wo WO 2005/056797 Al 6/2005 Lagos-Quintanaet al., “Identification of tissue-specific microRNAs WO WO 2005/078096 A2 8/2005 from mouse,” Current Biology, vol. 12:735-739, 2002. WO WO2005/078139 A2 8/2005 Sempere et al., “Expression profiling of mammalian microRNAs —- WoO WO 2005/097205 A2 10/2005 uncoversa subset ofbrain-expressed microRNAswith possible roles — WO WO 2005/098029 A2 10/2005 in murine and human neuronal differentiation”’ Genome Biology, — WO WO 2005/118806 A2 12/2005 = vol. 5:R13, 2004. WO WO 2006/020768 A2 2/2006 Wo WO 2006/048553 Al 5/2006 Van Rooij et al. “A signature pattern of stress-responsive Wo WO 2006/063356 Al 6/2006 microRNAsthat can evoke cardiac hypertrophy and heart failure,” Wo WO 2006/071884 A2 7/2006 Proc. Natl. Acad. Sci. USA, vol. 103: 18255-18260, 2006. WO WO 2006/108473 Al 10/2006 Landgrafet al., “A mammalian microRNAexpression atlas based on — WO WO 2006/111512 Al 10/2006 small RNAlibrary sequencing.” Cell, vol. 129: 1401-1414, 2007. WO WO 2006/133022 A2 12/2006 Landgrafet al., “A mammalian microRNAexpressionatlas based on — wo wo soooOooce& “ pos sma RNA library sequencing,” Cell, Supplementary Table S12, we we Rees ‘ seen Van Rooij et al., “Control of stress-dependent cardiac growth and WO WO 2007/044362 A2 4/2007 gene expression by a microRNA,”Science, vol. 316: 575-579, 2007. Wo WO 2007/053184 A2 5/2007 Van Roojj et al., “MicroRNA function during cardiac hypertrophy,” WO WO2007/056826 Al 5/2007 Abstract and Poster from 3rd Annual Symposium of the American Wo WO 2007/087451 A2 8/2007 Heart Association Council on Basic Cardiovascular Sciences: Trans- WO WO 2007/089607 A2 8/2007 lation of Basic Insights Into Clinical Practice: Jul. 31-Aug. 3, 2006 WO WO2007/090073 A2 8/2007 Keystone Conference Center Keystone, CO. — WO WO2007/092181 A2 8/2007 Ping et al., “The Study and Use of Antisense Oligonucleotide Tech- WO WO 2007/092182 A2 8/2007 nique in Cardiovascular Diseases,” Chinese Journal of Clinical Phar- WO WO 2007/095387 A2 8/2007 macology and Therapeutics, vol. 11: 241-245, 2006. WO WO 2007/103808 A2 9/2007 English Translation of Examination Report for Chinese Application WO WO 2007/112754 A2 10/2007 — WO WO 2007/147067 A2 12/2007 No. 200880 124495.1 issued Nov. 14, 2011. - wo WO 2007/147409 A2 12/2007 Seranski, Supplementary European Search Report and Opinion for wo WO 2008/024499 A? 2/2008 European Application No. 08847645.2, 9 pages, European Patent wo WO 2008/036776 A2 3/2008 Office, Munich, mailed Jan. 27, 2012. WO WO 2008/042231 A2 4/2008 Young, Written Opinion of the International Search Authority for WO WO 2008/043521 A2 4/2008 PCT/US2008/083020, 7 pages, mailed May 13, 2009. B2 L eanci ULTOUWORS Lue 9,078,919 avi Aq peyninBey | US mFei3g nie,umoy nhesdr i Beh Pole) 9 of 1 Sheet 2015 14, Jul. Rey CHEOBIOYL Patent U.S. B2 9,078,919 US 9 GR ya OSL wwe = of 2 BYALCUOUE POPU Sheet 2015 14, | YEG LAA YEOLAS Jul. LE wah WG2L wel PE aoe wie LE RU SyMMCopageiianir: Patent U.S. U.S. Patent Jul. 14, 2015 Sheet 3 of 9 US 9,078,919 B2 A microRNAsignature of the hypertrophic heart Normal | Failing Fold miR-23 _ miR-24 1.5 miR-125b 1.3 miR-195 3.0 miR-199a 2.1 miR-214 1.6 Figure 2 U.S. Patent Jul. 14, 2015 Sheet 4 of 9 US 9,078,919 B2 € &&. &.8 we OS neo 8‘ x* SyYBOMA FZ SHAM O 3 PiQure B2 py aunbi4 Awa ‘Soc ae mean 2 smwom@ aL pus E | [ ann ot ceo [ ue o 9,078,919 | 1 L, US +3 ‘et ret ca PT 9 dNd S6l VNU q of 5 Sheet OL Be n 2 se) ame 2015 FRB 14, RR Jul.
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