Shree Nath Singh Editor Microbial Degradation of Synthetic Dyes in Wastewaters Environmental Science and Engineering
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Retention Indices for Frequently Reported Compounds of Plant Essential Oils
Retention Indices for Frequently Reported Compounds of Plant Essential Oils V. I. Babushok,a) P. J. Linstrom, and I. G. Zenkevichb) National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA (Received 1 August 2011; accepted 27 September 2011; published online 29 November 2011) Gas chromatographic retention indices were evaluated for 505 frequently reported plant essential oil components using a large retention index database. Retention data are presented for three types of commonly used stationary phases: dimethyl silicone (nonpolar), dimethyl sili- cone with 5% phenyl groups (slightly polar), and polyethylene glycol (polar) stationary phases. The evaluations are based on the treatment of multiple measurements with the number of data records ranging from about 5 to 800 per compound. Data analysis was limited to temperature programmed conditions. The data reported include the average and median values of retention index with standard deviations and confidence intervals. VC 2011 by the U.S. Secretary of Commerce on behalf of the United States. All rights reserved. [doi:10.1063/1.3653552] Key words: essential oils; gas chromatography; Kova´ts indices; linear indices; retention indices; identification; flavor; olfaction. CONTENTS 1. Introduction The practical applications of plant essential oils are very 1. Introduction................................ 1 diverse. They are used for the production of food, drugs, per- fumes, aromatherapy, and many other applications.1–4 The 2. Retention Indices ........................... 2 need for identification of essential oil components ranges 3. Retention Data Presentation and Discussion . 2 from product quality control to basic research. The identifi- 4. Summary.................................. 45 cation of unknown compounds remains a complex problem, in spite of great progress made in analytical techniques over 5. -
Aldrich Vapor
Aldrich Vapor Library Listing – 6,611 spectra This library is an ideal tool for investigator using FT-IR to analyze gas phase materials. It contains gas phase spectra collected by Aldrich using a GC-IR interface to ensure chromatographically pure samples. The Aldrich FT-IR Vapor Phase Library contains 6,611 gas phase FT-IR spectra collected by Aldrich Chemical Company using a GC interface. The library includes compound name, molecular formula, CAS (Chemical Abstract Service) registry number, Aldrich catalog number, and page number in the Aldrich Library of FT-IR Spectra, Edition 1, Volume 3, Vapor-Phase. Aldrich Vapor Index Compound Name Index Compound Name 6417 ((1- 3495 (1,2-Dibromoethyl)benzene; Styrene Ethoxycyclopropyl)oxy)trimethylsilane dibromide 2081 (+)-3-(Heptafluorobutyryl)camphor 3494 (1-Bromoethyl)benzene; 1-Phenylethyl 2080 (+)-3-(Trifluoroacetyl)camphor bromide 262 (+)-Camphene; 2,2-Dimethyl-3- 6410 (1-Hydroxyallyl)trimethylsilane methylenebicyclo[2.2.1]heptane 6605 (1-Methyl-2,4-cyclopentadien-1- 2828 (+)-Diisopropyl L-tartrate yl)manganese tricarbonyl 947 (+)-Isomenthol; [1S-(1a,2b,5b)]-2- 6250 (1-Propynyl)benzene; 1-Phenylpropyne Isopropyl-5-methylcyclohexano 2079 (1R)-(+)-3-Bromocamphor, endo- 1230 (+)-Limonene oxide, cis + trans; (+)-1,2- 2077 (1R)-(+)-Camphor; (1R)-(+)-1,7,7- Epoxy-4-isopropenyl-1- Trimethylbicyclo[2.2.1]heptan- 317 (+)-Longifolene; (1S)-8-Methylene- 976 (1R)-(+)-Fenchyl alcohol, endo- 3,3,7-trimethyltricyclo[5.4.0 2074 (1R)-(+)-Nopinone; (1R)-(+)-6,6- 949 (+)-Menthol; [1S-(1a,2b,5a)]-(+)-2- Dimethylbicyclo[3.1.1]heptan-2- -
Field Guide to Common Macrofungi in Eastern Forests and Their Ecosystem Functions
United States Department of Field Guide to Agriculture Common Macrofungi Forest Service in Eastern Forests Northern Research Station and Their Ecosystem General Technical Report NRS-79 Functions Michael E. Ostry Neil A. Anderson Joseph G. O’Brien Cover Photos Front: Morel, Morchella esculenta. Photo by Neil A. Anderson, University of Minnesota. Back: Bear’s Head Tooth, Hericium coralloides. Photo by Michael E. Ostry, U.S. Forest Service. The Authors MICHAEL E. OSTRY, research plant pathologist, U.S. Forest Service, Northern Research Station, St. Paul, MN NEIL A. ANDERSON, professor emeritus, University of Minnesota, Department of Plant Pathology, St. Paul, MN JOSEPH G. O’BRIEN, plant pathologist, U.S. Forest Service, Forest Health Protection, St. Paul, MN Manuscript received for publication 23 April 2010 Published by: For additional copies: U.S. FOREST SERVICE U.S. Forest Service 11 CAMPUS BLVD SUITE 200 Publications Distribution NEWTOWN SQUARE PA 19073 359 Main Road Delaware, OH 43015-8640 April 2011 Fax: (740)368-0152 Visit our homepage at: http://www.nrs.fs.fed.us/ CONTENTS Introduction: About this Guide 1 Mushroom Basics 2 Aspen-Birch Ecosystem Mycorrhizal On the ground associated with tree roots Fly Agaric Amanita muscaria 8 Destroying Angel Amanita virosa, A. verna, A. bisporigera 9 The Omnipresent Laccaria Laccaria bicolor 10 Aspen Bolete Leccinum aurantiacum, L. insigne 11 Birch Bolete Leccinum scabrum 12 Saprophytic Litter and Wood Decay On wood Oyster Mushroom Pleurotus populinus (P. ostreatus) 13 Artist’s Conk Ganoderma applanatum -
Fruiting Body Form, Not Nutritional Mode, Is the Major Driver of Diversification in Mushroom-Forming Fungi
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi Marisol Sánchez-Garcíaa,b, Martin Rybergc, Faheema Kalsoom Khanc, Torda Vargad, László G. Nagyd, and David S. Hibbetta,1 aBiology Department, Clark University, Worcester, MA 01610; bUppsala Biocentre, Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, SE-75005 Uppsala, Sweden; cDepartment of Organismal Biology, Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, Sweden; and dSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Center, 6726 Szeged, Hungary Edited by David M. Hillis, The University of Texas at Austin, Austin, TX, and approved October 16, 2020 (received for review December 22, 2019) With ∼36,000 described species, Agaricomycetes are among the and the evolution of enclosed spore-bearing structures. It has most successful groups of Fungi. Agaricomycetes display great di- been hypothesized that the loss of ballistospory is irreversible versity in fruiting body forms and nutritional modes. Most have because it involves a complex suite of anatomical features gen- pileate-stipitate fruiting bodies (with a cap and stalk), but the erating a “surface tension catapult” (8, 11). The effect of gas- group also contains crust-like resupinate fungi, polypores, coral teroid fruiting body forms on diversification rates has been fungi, and gasteroid forms (e.g., puffballs and stinkhorns). Some assessed in Sclerodermatineae, Boletales, Phallomycetidae, and Agaricomycetes enter into ectomycorrhizal symbioses with plants, Lycoperdaceae, where it was found that lineages with this type of while others are decayers (saprotrophs) or pathogens. We constructed morphology have diversified at higher rates than nongasteroid a megaphylogeny of 8,400 species and used it to test the following lineages (12). -
From Ultrathin Coatings to Laser Lithography
Designing Functional 2D and 3D Structures: From Ultrathin Coatings to Laser Lithography Zur Erlangung des akademischen Grades eines DOKTORS DER NATURWISSENSCHAFTEN (Dr. rer. nat.) von der KIT-Fakultät für Chemie und Biowissenschaften des Karlsruher Instituts für Technologie (KIT) genehmigte DISSERTATION von M. Sc. Markus Michael Zieger aus Pforzheim, Deutschland 1. Referent: Prof. Dr. Christopher Barner-Kowollik 2. Referent: Prof. Dr. Hans-Achim Wagenknecht Tag der mündlichen Prüfung: 18.07.2018 Die vorliegende Arbeit wurde vom Februar 2015 bis Juni 2018 unter der Anleitung von Prof. Dr. Christopher Barner-Kowollik und Prof. Dr. Martin Wegener am Karlsruher Institut für Technologie (Universitätsbereich) angefertigt. iii Introduction In tiefer Dankbarkeit meiner Familie gewidmet. iv Hiermit erkläre ich wahrheitsgemäß, dass die vorliegende Doktorarbeit im Rahmen der Betreuung durch Prof. Dr. Christopher Barner-Kowollik von mir verfasst wurde und keine anderen als die angegebenen Quellen und Hilfsmittel verwendet wurden. Wörtlich oder inhaltlich übernommene Passagen sind mit dem entsprechenden Zitat kenntlich gemacht. Darüber hinaus wurde die Satzung des Karlsruher Instituts für Technologie (KIT) zur Sicherung guter wissenschaftlicher Praxis beachtet, insbesondere die Abgabe und Archivierung der Primärdaten gemäß Abs. A (6). Ebenfalls bestätige ich, dass die elektronische Version der Arbeit mit der schriftlich abgegebenen übereinstimmt. Des Weiteren erkläre ich, dass ich mich derzeit in keinem weiteren laufenden Promotionsverfahren befinde -
Nicolet Condensed Phase Academic Sampler
Nicolet Condensed Phase Academic Sampler Library Listing – 1,000 spectra This high resolution format library is suited to the needs of academic institutions and small QC labs. Chosen by chemistry professors from many disciplines, it includes spectra of chemicals used in a wide range of common laboratory experiments. The Nicolet Condensed Phase Academic Sampler includes 1,000 spectra of common chemicals representing the major functional groups and combinations of functional groups which are most likely to be observed in academic chemistry laboratories. These chemicals are also important building blocks commonly found in industrial applications. Thermo Nicolet Condensed Phase Academic Sampler Index Compound Name Index Compound Name 353 (+)-2-Phenyl-1-propanol, 97% 164 1,2,4,5-Tetramethylbenzene, 98% 768 (+)-4-Cholesten-3-one 161 1,2,4-Trimethylbenzene, 99+% 290 (+)-a-Lactose 254 1,2-Butanediol, 98% 262 (+)-b-Citronellol, 95% 499 1,2-Diaminopropane, 99% 344 (+/-)-1-Phenyl-1-propanol, 99% 128 1,2-Dibromoethylene, 98%, (Z) + (E) 101 (+/-)-2-Bromopentane, 97% 106 1,2-Dichloroethane, 99+% 228 (+/-)-2-Butanol, 99% 110 1,2-Dichloropropane, 99% 233 (+/-)-2-Heptanol, 96% 258 1,2-Pentanediol, tech., 95% 402 (+/-)-Camphor, 97% 550 1,2-Phenylenediamine, 98% 553 (+/-)-Epinephrine, 99% 77 1,3,5,7-Cyclooctatetraene, 98% 280 (+/-)-Isoborneol, 85% 45 1,3,5-Hexatriene 706 (+/-)-Warfarin, 98% 74 1,3-Cycloheptadiene, 97% 648 (+/-)-sec-Butyl acetate, 99% 72 1,3-Cyclohexadiene, 96% 490 (+/-)-sec-Butylamine, 99% 388 1,3-Cyclohexanedione, 97% 279 (-)-Borneol, -
Marine Extremophiles: a Source of Hydrolases for Biotechnological Applications
Mar. Drugs 2015, 13, 1925-1965; doi:10.3390/md13041925 OPEN ACCESS marine drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Article Marine Extremophiles: A Source of Hydrolases for Biotechnological Applications Gabriel Zamith Leal Dalmaso 1,2, Davis Ferreira 3 and Alane Beatriz Vermelho 1,* 1 BIOINOVAR—Biotechnology laboratories: Biocatalysis, Bioproducts and Bioenergy, Institute of Microbiology Paulo de Góes, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil; E-Mail: [email protected] 2 Graduate Program in Plant Biotechnology, Health and Science Centre, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil 3 BIOINOVAR—Biotechnology Laboratories: Virus-Cell Interaction, Institute of Microbiology Paulo de Góes, Federal University of Rio de Janeiro, Av. Carlos Chagas Filho, 373, 21941-902 Rio de Janeiro, Brazil; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +55-(21)-3936-6743; Fax: +55-(21)-2560-8344. Academic Editor: Kirk Gustafson Received: 1 December 2014 / Accepted: 25 March 2015 / Published: 3 April 2015 Abstract: The marine environment covers almost three quarters of the planet and is where evolution took its first steps. Extremophile microorganisms are found in several extreme marine environments, such as hydrothermal vents, hot springs, salty lakes and deep-sea floors. The ability of these microorganisms to support extremes of temperature, salinity and pressure demonstrates their great potential for biotechnological processes. Hydrolases including amylases, cellulases, peptidases and lipases from hyperthermophiles, psychrophiles, halophiles and piezophiles have been investigated for these reasons. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Fungi of the Baldwin Woods Forest Preserve - Rice Tract Based on Surveys Conducted in 2020 by Sherry Kay and Ben Sikes
Fungi of the Baldwin Woods Forest Preserve - Rice Tract Based on surveys conducted in 2020 by Sherry Kay and Ben Sikes Scientific name Common name Comments Agaricus silvicola Wood Mushroom Allodus podophylli Mayapple Rust Amanita flavoconia group Yellow Patches Amanita vaginata group 4 different taxa Arcyria cinerea Myxomycete (Slime mold) Arcyria sp. Myxomycete (Slime mold) Arcyria denudata Myxomycete (Slime mold) Armillaria mellea group Honey Mushroom Auricularia americana Cloud Ear Biscogniauxia atropunctata Bisporella citrina Yellow Fairy Cups Bjerkandera adusta Smoky Bracket Camarops petersii Dog's Nose Fungus Cantharellus "cibarius" Chanterelle Ceratiomyxa fruticulosa Honeycomb Coral Slime Mold Myxomycete (Slime mold) Cerioporus squamosus Dryad's Saddle Cheimonophyllum candidissimum Class Agaricomycetes Coprinellus radians Orange-mat Coprinus Coprinopsis variegata Scaly Ink Cap Cortinarius alboviolaceus Cortinarius coloratus Crepidotus herbarum Crepidotus mollis Peeling Oysterling Crucibulum laeve Common Bird's Nest Dacryopinax spathularia Fan-shaped Jelly-fungus Daedaleopsis confragosa Thin-walled Maze Polypore Diatrype stigma Common Tarcrust Ductifera pululahuana Jelly Fungus Exidia glandulosa Black Jelly Roll Fuligo septica Dog Vomit Myxomycete (Slime mold) Fuscoporia gilva Mustard Yellow Polypore Galiella rufa Peanut Butter Cup Gymnopus dryophilus Oak-loving Gymnopus Gymnopus spongiosus Gyromitra brunnea Carolina False Morel; Big Red Hapalopilus nidulans Tender Nesting Polypore Hydnochaete olivacea Brown-toothed Crust Hymenochaete -
Polyporales, Basidiomycota), a New Polypore Species and Genus from Finland
Ann. Bot. Fennici 54: 159–167 ISSN 0003-3847 (print) ISSN 1797-2442 (online) Helsinki 18 April 2017 © Finnish Zoological and Botanical Publishing Board 2017 Caudicicola gracilis (Polyporales, Basidiomycota), a new polypore species and genus from Finland Heikki Kotiranta1,*, Matti Kulju2 & Otto Miettinen3 1) Finnish Environment Institute, Natural Environment Centre, P.O. Box 140, FI-00251 Helsinki, Finland (*corresponding author’s e-mail: [email protected]) 2) Biodiversity Unit, P.O. Box 3000, FI-90014 University of Oulu, Finland 3) Finnish Museum of Natural History, Botanical Museum, P.O. Box 7, FI-00014 University of Helsinki, Finland Received 10 Jan. 2017, final version received 23 Mar. 2017, accepted 27 Mar. 2017 Kotiranta H., Kulju M. & Miettinen O. 2017: Caudicicola gracilis (Polyporales, Basidiomycota), a new polypore species and genus from Finland. — Ann. Bot. Fennici 54: 159–167. A new monotypic polypore genus, Caudicicola Miettinen, Kotir. & Kulju, is described for the new species C. gracilis Kotir., Kulju & Miettinen. The species was collected in central Finland from Picea abies and Pinus sylvestris stumps, where it grew on undersides of stumps and roots. Caudicicola gracilis is characterized by very fragile basidiocarps, monomitic hyphal structure with clamps, short and wide tramal cells, smooth ellipsoid spores, basidia with long sterigmata and conidiogenous areas in the margins of the basidiocarp producing verrucose, slightly thick-walled conidia. The genus belongs to the residual polyporoid clade of the Polyporales in the vicinity of Steccherinaceae, but has no known close relatives. Introduction sis taxicola, Pycnoporellus fulgens and its suc- cessional predecessor Fomitopsis pinicola, and The species described here was found when deciduous tree trunks had such seldom collected Heino Kulju, the brother of the second author, species as Athelopsis glaucina (on Salix) and was making a forest road for tractors. -
Polypore Diversity in North America with an Annotated Checklist
Mycol Progress (2016) 15:771–790 DOI 10.1007/s11557-016-1207-7 ORIGINAL ARTICLE Polypore diversity in North America with an annotated checklist Li-Wei Zhou1 & Karen K. Nakasone2 & Harold H. Burdsall Jr.2 & James Ginns3 & Josef Vlasák4 & Otto Miettinen5 & Viacheslav Spirin5 & Tuomo Niemelä 5 & Hai-Sheng Yuan1 & Shuang-Hui He6 & Bao-Kai Cui6 & Jia-Hui Xing6 & Yu-Cheng Dai6 Received: 20 May 2016 /Accepted: 9 June 2016 /Published online: 30 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract Profound changes to the taxonomy and classifica- 11 orders, while six other species from three genera have tion of polypores have occurred since the advent of molecular uncertain taxonomic position at the order level. Three orders, phylogenetics in the 1990s. The last major monograph of viz. Polyporales, Hymenochaetales and Russulales, accom- North American polypores was published by Gilbertson and modate most of polypore species (93.7 %) and genera Ryvarden in 1986–1987. In the intervening 30 years, new (88.8 %). We hope that this updated checklist will inspire species, new combinations, and new records of polypores future studies in the polypore mycota of North America and were reported from North America. As a result, an updated contribute to the diversity and systematics of polypores checklist of North American polypores is needed to reflect the worldwide. polypore diversity in there. We recognize 492 species of polypores from 146 genera in North America. Of these, 232 Keywords Basidiomycota . Phylogeny . Taxonomy . species are unchanged from Gilbertson and Ryvarden’smono- Wood-decaying fungus graph, and 175 species required name or authority changes. -
The Study on the Cultivable Microbiome of the Aquatic Fern Azolla Filiculoides L
applied sciences Article The Study on the Cultivable Microbiome of the Aquatic Fern Azolla Filiculoides L. as New Source of Beneficial Microorganisms Artur Banach 1,* , Agnieszka Ku´zniar 1, Radosław Mencfel 2 and Agnieszka Woli ´nska 1 1 Department of Biochemistry and Environmental Chemistry, The John Paul II Catholic University of Lublin, 20-708 Lublin, Poland; [email protected] (A.K.); [email protected] (A.W.) 2 Department of Animal Physiology and Toxicology, The John Paul II Catholic University of Lublin, 20-708 Lublin, Poland; [email protected] * Correspondence: [email protected]; Tel.: +48-81-454-5442 Received: 6 May 2019; Accepted: 24 May 2019; Published: 26 May 2019 Abstract: The aim of the study was to determine the still not completely described microbiome associated with the aquatic fern Azolla filiculoides. During the experiment, 58 microbial isolates (43 epiphytes and 15 endophytes) with different morphologies were obtained. We successfully identified 85% of microorganisms and assigned them to 9 bacterial genera: Achromobacter, Bacillus, Microbacterium, Delftia, Agrobacterium, and Alcaligenes (epiphytes) as well as Bacillus, Staphylococcus, Micrococcus, and Acinetobacter (endophytes). We also studied an A. filiculoides cyanobiont originally classified as Anabaena azollae; however, the analysis of its morphological traits suggests that this should be renamed as Trichormus azollae. Finally, the potential of the representatives of the identified microbial genera to synthesize plant growth-promoting substances such as indole-3-acetic acid (IAA), cellulase and protease enzymes, siderophores and phosphorus (P) and their potential of utilization thereof were checked. Delftia sp. AzoEpi7 was the only one from all the identified genera exhibiting the ability to synthesize all the studied growth promoters; thus, it was recommended as the most beneficial bacteria in the studied microbiome.