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Supplemental Information Biological Conservation No Safe Haven: Protection Levels Show Imperilled South African Reptiles Not
Supplemental Information Biological Conservation No safe haven: protection levels show imperilled South African reptiles not sufficiently safe- guarded despite low average extinction risk Krystal A. Tolley, Joshua Weeber, Bryan Maritz, Luke Verburgt, Michael F. Bates, Werner Conradie, Margaretha D. Hofmeyr, Andrew A. Turner, Jessica M. da Silva, Graham J. Alexander Supplemental Figures S1-S3 Figure S1. Species richness of threatened and Near Threatened reptiles in South Africa. 1 Figure S2. Reptile species richness in South Africa (darker shades indicate higher richness), with the current protected area network indicated by the black outlines. 2 Figure S3. Reptile species richness in South Africa (darker shades indicate higher richness), with the current protected area network indicated by the grey shaded polygons and the protected area expansion network indicated by black polygon outlines. 3 Appendix S1. Protocol for Measuring Protection Level for South African Reptiles The following process was applied to measure the level of protection for each species, using the interpreted distributions for the species (see main text). We evaluated the effectiveness of South Africa’s protected area network in ensuring that minimum viable populations of reptiles are protected. We set a conservation target for protection of at least 10 fragments of protected habitat, each with areas greater than 10 km2 (1000 ha) for a total of 100 km2 for each species. The fragment size was considered to be the minimum area that would support viable populations, with the total area considered to be the total area needed to safeguard the species survival into the future. The interpreted distributions for each species were then intersected with South Africa’s protected area network (Government of South Africa, 2010). -
Technical Report for the Mpumalanga Biodiversity Sector Plan – MBSP 2015
Technical Report for the Mpumalanga Biodiversity Sector Plan – MBSP 2015 June 2015 Authored by: Mervyn C. Lötter Mpumalanga Tourism &Parks Agency Private bag X1088 Lydenburg, 1120 1 Citation: This document should be cited as: Lötter, M.C. 2015. Technical Report for the Mpumalanga Biodiversity Sector Plan – MBSP. Mpumalanga Tourism & Parks Agency, Mbombela (Nelspruit). ACKNOWLEDGMENTS There are many individuals and organisations that contributed towards the success of the MBSP. In particular we gratefully acknowledge the ArcGIS software grant from the ESRI Conservation Program. In addition the WWF-SA and SANBIs Grasslands Programme played an important role in supporting the development and financing parts of the MBSP. The development of the MBSP spatial priorities took a few years to complete with inputs from many different people and organisations. Some of these include: MTPA scientists, Amanda Driver, Byron Grant, Jeff Manuel, Mathieu Rouget, Jeanne Nel, Stephen Holness, Phil Desmet, Boyd Escott, Charles Hopkins, Tony de Castro, Domitilla Raimondo, Lize Von Staden, Warren McCleland, Duncan McKenzie, Natural Scientific Services (NSS), South African National Biodiversity Institute (SANBI), Strategic Environmental Focus (SESFA),Birdlife SA, Endangered Wildlife Trust, Graham Henning, Michael Samways, John Simaika, Gerhard Diedericks, Warwick Tarboton, Jeremy Dobson, Ian Engelbrecht, Geoff Lockwood, John Burrows, Barbara Turpin, Sharron Berruti, Craig Whittington-Jones, Willem Froneman, Peta Hardy, Ursula Franke, Louise Fourie, Avian Demography -
Phylogeographic Patterning of Three Co-Distributed Forest-Dwelling Reptile Species Along the East Coast of South Africa
Phylogeographic patterning of three co-distributed forest-dwelling reptile species along the east coast of South Africa By Theo Busschau Thesis presented in partial fulfilment of the requirements for the degree Master of Science in Zoology at Stellenbosch University Supervisor: Prof. Savel R. Daniels Co-supervisor: Mr. Werner Conradie Faculty of Science Department of Botany and Zoology December 2019 Stellenbosch University https://scholar.sun.ac.za Declaration By submitting this thesis electronically, I declare that the entirety of the work contained therein is my own, original work, that I am the authorship owner thereof (unless to the extent explicitly otherwise stated) and that I have not previously in its entirety or in part submitted it for obtaining any qualification. December 2019 Copyright © 2019 Stellenbosch University All rights reserved II Stellenbosch University https://scholar.sun.ac.za Abstract This study investigates the phylogeographic structure of three co-distributed forest-living reptile species, the Pondo flat gecko (Afroedura pondolia), the forest thread snake (Leptotyphlops sylvicolus) and the Natal black snake (Macrelaps microlepidotus), by sampling specimens from the Eastern Cape and KwaZulu-Natal provinces of South Africa. Phylogenetic results, using Bayesian inferences and maximum likelihood, from the combined mitochondrial sequence data (ND4 and cyt b), along with population genetic analyses suggest the presence of broadly congruent biogeographic breaks among the study taxa. Sequence divergence values suggest that A. pondolia and L. sylvicolus represent species complexes comprising several cryptic species while M. microlepidotus exhibits population level differentiation. Divergence-time estimates indicate that cladogenesis within the study taxa occurred during the late Miocene to the Plio/Pleistocene climatic shifts, suggesting that cladogenesis was driven by climatic oscillations and suitable habitat fragmentation. -
Systematics of Collared Snakes and Burrowing Asps (Aparallactinae
University of Texas at El Paso DigitalCommons@UTEP Open Access Theses & Dissertations 2017-01-01 Systematics Of Collared Snakes And Burrowing Asps (aparallactinae And Atractaspidinae) (squamata: Lamprophiidae) Francisco Portillo University of Texas at El Paso, [email protected] Follow this and additional works at: https://digitalcommons.utep.edu/open_etd Part of the Zoology Commons Recommended Citation Portillo, Francisco, "Systematics Of Collared Snakes And Burrowing Asps (aparallactinae And Atractaspidinae) (squamata: Lamprophiidae)" (2017). Open Access Theses & Dissertations. 731. https://digitalcommons.utep.edu/open_etd/731 This is brought to you for free and open access by DigitalCommons@UTEP. It has been accepted for inclusion in Open Access Theses & Dissertations by an authorized administrator of DigitalCommons@UTEP. For more information, please contact [email protected]. SYSTEMATICS OF COLLARED SNAKES AND BURROWING ASPS (APARALLACTINAE AND ATRACTASPIDINAE) (SQUAMATA: LAMPROPHIIDAE) FRANCISCO PORTILLO, BS, MS Doctoral Program in Ecology and Evolutionary Biology APPROVED: Eli Greenbaum, Ph.D., Chair Carl Lieb, Ph.D. Michael Moody, Ph.D. Richard Langford, Ph.D. Charles H. Ambler, Ph.D. Dean of the Graduate School Copyright © by Francisco Portillo 2017 SYSTEMATICS OF COLLARED SNAKES AND BURROWING ASPS (APARALLACTINAE AND ATRACTASPIDINAE) (SQUAMATA: LAMPROPHIIDAE) by FRANCISCO PORTILLO, BS, MS DISSERTATION Presented to the Faculty of the Graduate School of The University of Texas at El Paso in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Department of Biological Sciences THE UNIVERSITY OF TEXAS AT EL PASO May 2017 ACKNOWLEDGMENTS First, I would like to thank my family for their love and support throughout my life. I am very grateful to my lovely wife, who has been extremely supportive, motivational, and patient, as I have progressed through graduate school. -
Patterns of Species Richness, Endemism and Environmental Gradients of African Reptiles
Journal of Biogeography (J. Biogeogr.) (2016) ORIGINAL Patterns of species richness, endemism ARTICLE and environmental gradients of African reptiles Amir Lewin1*, Anat Feldman1, Aaron M. Bauer2, Jonathan Belmaker1, Donald G. Broadley3†, Laurent Chirio4, Yuval Itescu1, Matthew LeBreton5, Erez Maza1, Danny Meirte6, Zoltan T. Nagy7, Maria Novosolov1, Uri Roll8, 1 9 1 1 Oliver Tallowin , Jean-Francßois Trape , Enav Vidan and Shai Meiri 1Department of Zoology, Tel Aviv University, ABSTRACT 6997801 Tel Aviv, Israel, 2Department of Aim To map and assess the richness patterns of reptiles (and included groups: Biology, Villanova University, Villanova PA 3 amphisbaenians, crocodiles, lizards, snakes and turtles) in Africa, quantify the 19085, USA, Natural History Museum of Zimbabwe, PO Box 240, Bulawayo, overlap in species richness of reptiles (and included groups) with the other ter- Zimbabwe, 4Museum National d’Histoire restrial vertebrate classes, investigate the environmental correlates underlying Naturelle, Department Systematique et these patterns, and evaluate the role of range size on richness patterns. Evolution (Reptiles), ISYEB (Institut Location Africa. Systematique, Evolution, Biodiversite, UMR 7205 CNRS/EPHE/MNHN), Paris, France, Methods We assembled a data set of distributions of all African reptile spe- 5Mosaic, (Environment, Health, Data, cies. We tested the spatial congruence of reptile richness with that of amphib- Technology), BP 35322 Yaounde, Cameroon, ians, birds and mammals. We further tested the relative importance of 6Department of African Biology, Royal temperature, precipitation, elevation range and net primary productivity for Museum for Central Africa, 3080 Tervuren, species richness over two spatial scales (ecoregions and 1° grids). We arranged Belgium, 7Royal Belgian Institute of Natural reptile and vertebrate groups into range-size quartiles in order to evaluate the Sciences, OD Taxonomy and Phylogeny, role of range size in producing richness patterns. -
The Distribution and Abundance of Herpetofauna on a Quaternary Aeolian Dune Deposit: Implications for Strip Mining
The distribution and abundance of herpetofauna on a Quaternary aeolian dune deposit: Implications for Strip Mining Bryan Maritz A dissertation submitted to the School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Johannesburg, South Africa in fulfilment of the requirements of the degree of Masters of Science. Johannesburg, South Africa July, 2007 ABSTRACT Exxaro KZN Sands is planning the development of a heavy minerals strip mine south of Mtunzini, KwaZulu-Natal, South Africa. The degree to which mining activities will affect local herpetofauna is poorly understood and baseline herpetofaunal diversity data are sparse. This study uses several methods to better understand the distribution and abundance of herpetofauna in the area. I reviewed the literature for the grid squares 2831DC and 2831 DD and surveyed for herpetofauna at the study site using several methods. I estimate that 41 amphibian and 51 reptile species occur in these grid squares. Of these species, 19 amphibian and 39 reptile species were confirmed for the study area. In all, 29 new unique, grid square records were collected. The paucity of ecological data for cryptic fauna such as herpetofauna is particularly evident for taxa that are difficult to sample. Because fossorial herpetofauna spend most of their time below the ground surface, their ecology and biology are poorly understood and warrant further investigation. I sampled fossorial herpetofauna using two excavation techniques. Sites were selected randomly from the study area which was expected to host high fossorial herpetofaunal diversity and abundance. A total of 218.6 m3 of soil from 311 m2 (approximately 360 metric tons) was excavated and screened for herpetofauna. -
Burrowing Snakes
1 – WildlifeCampus Snakes and Reptiles of the Lowveld Course Module # 4 - Component # 4 Burrowing Snakes Family Lamprophiidae As the name suggests, these snakes are largely subterranean. Their heads are not very distinctive from the rest of the body and are usually rounded or blunt. There are front and back fanged fangs species in the family. Although fanged, most of them are not dangerous to humans. All species are oviparous with one exception. Burrowing Snakes © Copyright This course material is the copyrighted intellectual property of WildlifeCampus. It may not be copied, distributed or reproduced in any format whatsoever without the express written permission of WildlifeCampus 2 – WildlifeCampus Snakes and Reptiles of the Lowveld Course Sub-Family Atractaspidinae 3 species occur in southern Africa, of which two occur in South Africa. They have very small eyes with round pupils. There are symmetrical head scales and the head is pointed. Great care must be taken with this species, as they are practically impossible to handle. The difficulty (impossibility) in handling the asps is due to the interesting characteristic they can rotate their fangs to the side. The position that professional and experienced snake handlers use to pin the snake involved having their thumb right up against the side of the fang. The asp then just rotates a fang and jabs their head slightly to the side, thus snake 1, handler 0. All other species of front and rear-fanged snakes are not able to rotate fangs in multiple directions, only up-down. The Asps will even push their fang through their own lip to make sure they stab their assailant. -
Denisonia Hydrophis Parapistocalamus Toxicocalamus Disteira Kerilia Pelamis Tropidechis Drysdalia Kolpophis Praescutata Vermicella Echiopsis Lapemis
The following is a work in progress and is intended to be a printable quick reference for the venomous snakes of the world. There are a few areas in which common names are needed and various disputes occur due to the nature of such a list, and it will of course be continually changing and updated. And nearly all species have many common names, but tried it simple and hopefully one for each will suffice. I also did not include snakes such as Heterodon ( Hognoses), mostly because I have to draw the line somewhere. Disclaimer: I am not a taxonomist, that being said, I did my best to try and put together an accurate list using every available resource. However, it must be made very clear that a list of this nature will always have disputes within, and THIS particular list is meant to reflect common usage instead of pioneering the field. I put this together at the request of several individuals new to the venomous endeavor, and after seeing some very blatant mislabels in the classifieds…I do hope it will be of some use, it prints out beautifully and I keep my personal copy in a three ring binder for quick access…I honestly thought I knew more than I did…LOL… to my surprise, I learned a lot while compiling this list and I hope you will as well when you use it…I also would like to thank the following people for their suggestions and much needed help: Dr.Wolfgang Wuster , Mark Oshea, and Dr. Brian Greg Fry. -
A Handbook on the Rare, Threatened & Endemic Species of the Greater St Lucia Wetland Park
f A HANDBOOK ON THE RARE, THREATENED & ENDEMIC SPECIES OF THE GREATER ST LUCIA WETLAND PARK A product of the Greater St Lucia Wetland Park Rare, Threatened & Endemic Species Project Combrink & Kyle June 2006 St Lucia Office: The Dredger Harbour, Private Bag x05, St Lucia 3936 Tel No. +27 35 590 1633, Fax No. +27 35 590 1602, e-mail [email protected] 2 “Suddenly, as rare things will, it vanished” Robert Browning A photograph taken in 2003 of probably the last known Bonatea lamprophylla, a recently (1976) described terrestrial orchid that was known from three small populations, all within the Greater St Lucia Wetland Park. Nothing was known on the biology or life history of this species, except that it produced spectacular flowers between September and October. This orchid might have to be reclassified in the future as extinct. Suggested citation for this product: Combrink, A.S. and Kyle, R. 2006. A Handbook on the Rare, Threatened & Endemic Species of the Greater St Lucia Wetland Park. A product of the Greater St Lucia Wetland Park - Rare, Threatened & Endemic Species Project. Unpublished internal report. 191 pp. 3 TABLE OF CONTENTS 1 FOREWORD............................................................................................................................................ 6 2 INTRODUCTION .................................................................................................................................... 7 3 EXECUTIVE SUMMARY ..................................................................................................................... -
Rietvlei Colliery Outside Middelburg, Mpumalanga Province
FAUNAL, FLORAL, WETLAND AND AQUATIC ASSESSMENT AS PART OF THE ENVIRONMENTAL ASSESSMENT AND AUTHORISATION PROCESS FOR THE PROPOSED RIETVLEI COLLIERY OUTSIDE MIDDELBURG, MPUMALANGA PROVINCE Prepared for WSP Group April 2014 SECTION C– Faunal Assessment Prepared by: Scientific Aquatic Services Report author M Hanekom Report reviewer S. van Staden (Pr. Sci. Nat) Report Reference: SAS 213295 Date: April 2014 Scientific Aquatic Services CC CC Reg No 2003/078943/23 Vat Reg. No. 4020235273 91 Geldenhuis Rd Malvern East, Ext 1 2007 Tel: 011 616 7893 Fax: 086 724 3132 E-mail: [email protected] SAS 213295 – SECTION C April 2014 TABLE OF CONTENTS TABLE OF CONTENTS ................................................................................................... ii LIST OF FIGURES .......................................................................................................... iii LIST OF TABLES ............................................................................................................ iii ACRONYMS .................................................................................................................... iv 1. INTRODUCTION .................................................................................................... 1 1.1 Background ............................................................................................................ 1 1.2 Assumptions and Limitations .................................................................................. 1 2. FAUNAL METHOD OF ASSESSMENT ................................................................ -
National Biodiversity Assessment 2018 Technical Report Vol
National Biodiversity Assessment 2018 Technical Report Vol. 7: Genetic Diversity National Biodiversity Assessment 2018 TECHNICAL REPORT Volume 7: Genetic Diversity REPORT NUMBER: http://hdl.handle.net/20.500.12143/6376 National Biodiversity Assessment 2018 Technical Report Vol. 7: Genetic Diversity CITATION FOR THIS REPORT: Tolley, K.A., da Silva, J.M. & Jansen van Vuuren, B. 2019. South African National Biodiversity Assessment 2018 Technical Report Volume 7: Genetic Diversity. South African National Biodiversity Institute, Pretoria. http://hdl.handle.net/20.500.12143/6376 PREPARED BY: Tolley, K.A., da Silva, J.M., Jansen van Vuuren, B., Bishop, J., Dalton, D., du Plessis, M., Labuschagne, K., Kotze, A., Masehela, T., Mwale, M., Selier. J., Šmíd, J., Suleman, E., Visser, J., & von der Heyden, S. REVIEWER: Sean Hoban CONTACT PERSON: Krystal A. Tolley: [email protected] The NBA 2018 was undertaken primarily during 2015 to early 2019 and therefore the names and acronyms of government departments in existence during that period are used throughout the NBA reports. Please refer to www.gov.za to see that changes in government departments that occurred in mid-2019. 2 National Biodiversity Assessment 2018 Technical Report Vol. 7: Genetic Diversity This report forms part of a set of reports, datasets and supplementary materials that make up the South African National Biodiversity Assessment 2018. Please see the website [http://nba.sanbi.org.za/] for full accessibility to all materials. SYNTHESIS REPORT For reference in scientific publications Skowno, A.L., Poole, C.J., Raimondo, D.C., Sink, K.J., Van Deventer, H., Van Niekerk, L., Harris, L.R., Smith-Adao, L.B., Tolley, K.A., Zengeya, T.A., Foden, W.B., Midgley, G.F. -
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U o o -l0) P< o -f Lf rQ <-- ri: r 0'' aq d < l-\ T] U! AE tJ o UJ6 o ct-m xs tT I +.^ )- Q< 6H'n x'r' sin O -' .u,J O rn :_UJ 0-'q o! Qm7 m m ll >H ;#[r =io f o 0)- A-ds 6 f o (! a EE-II 0 CctNTENTEi €jc,7 I. INTFIOEtUCTIclN 607 II. TEFIMINOLctGtY VIVIPAFIITY 60E| III. HYPOTHE€tEg] ctN FTEPTILIAN A. TyPes of HyPolrheses' 608 Factons' 603 B. Hypotheses Based on Envinonrnent'al 61O C. Hypotheses Eased on Species Chanacl'enisl'ics' 13 ctF HYPOTHESES €i IV. AEiSUM]'TION€I ANEI LctGTC A. Genenal, 613 613 B. Ovipanity as the Pnimitive Condition' C. The Cos1, of ViviPanitY' 6'1 4 615 D. The lrnpontance of Intenmediate Stages' 6'1 6 E. Causes of Egg Montality in the Wild' F. Thenmal Felations of Eggs' 617 G. The Fole of Unpnedictabilitv' 618 HYPCTTHEE;EA 619 V. EMPIFTICAL SUPPGIFTT FOFI THE A. Genenal, 5'1 g B. The Cold-Climate Hypol;hesis' 619 Hypothesis' 62''l C. The Envinonmental UnpnedicEability D. Othen Envinonrnental Factons' 621 E. Defensive AbilitY' 622 F. Othen Specres Chanactenistlcs' 623 G. Ovenview, 624 \/IVIPAFTITY IN VI. EVGILUTIGINAFTY ctFIIGINEi ctF Ei25 ETOUAMATE FIEPTILE€i A. Genenal, 625 B. AmPhisbaenia, 625 C. Saunia' 626 tr}. SenPentes, 645 66c, VII. EVALUATIGIN CtF CASE HTEiTclFIIE€i 660 A. Fnequency of Evolution of Vivipanity' E}. Taxonomic Biases, 663 C. Evaluation of HYPotheses' 665 677 vilr. coNcLuEtloNEt Eiao ACKNC'vt,LEEtGIMENTCI 6E'l FTEFEFIENCEEi TEFIMINOLclGY I. INTFIc'ElUCTIclN (turtles €j07 Of the four orders of living reptiles, three are entirely oviparous and crocodilians),but approximately one-fifth of all speciesof lizards, 6c,7 snakesand amphisbaeniansare viviparous.