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Generate Metabolic Map Poster Authors: Pallavi Subhraveti Ron Caspi Peter Midford Peter D Karp An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Ingrid Keseler Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_001049335Cyc: Brenneria goodwinii OBR1 Cellular Overview Connections between pathways are omitted for legibility. Anamika Kothari cob(I)inamide molybdate molybdate thiamine phosphate phosphate cob(I)alamin YejB RS18010 RS14805 RS03785 MscM SecE RS17725 RS05720 RS00655 SsuC BtuD LptB RS04615 RS20200 ModC ModF RS07735 DsbB LptG OppB RS19395 YidC SohB RsxG RS15220 RS19160 RS07820 RS00840 FtsB PhnE FhuB RS12605 FtsA PutP KefG RS12910 RS04315 ThiQ BcsB RarD RS18640 SstT PotA RS07160 RS22220 RS22170 RS14420 RS10350 RS02860 RS12970 RS02850 RS22020 RS06535 TolR PspC FtsY RS14970 RS18340 RS06445 MscS RS14040 RS08160 FtsI SapC FlhB UbiB CpxA RS02730 FlhA RS01300 MotA GlnK RS21735 GsiC NlpI RS07545 RS02795 TatA RS16345 RS04050 TolQ RS22005 YajC TauC RS22090 RS04300 RS08815 RS06620 RS03145 RS14525 RS04230 RS13675 PstB PstB ElaB RS22450 RS06785 RS10875 RS01715 RS01745 RS22545 RS14810 RS08640 RsxG RS18870 RS11325 RS07250 RS22895 RS22955 RsxB RS15285 NtrB PotH PotA RS19495 RS16950 MdtG RS07625 ManX ArcB RS08105 RS04905 FeoB MetI SecY GspE RS02480 RS02510 RS20795 RS08205 RcsD RS21135 RS13550 RS18140 RS02725 RS01280 PhnE FliR PsiE FliQ FliM UgpA FliL FliJ RS10950 RS13735 RS13745 cob(I)inamide molybdate molybdate thiamine cob(I)alamin phosphate phosphate LivM LapB RS13620 RS13625 RS06340 RS14160 Degradation/Utilization/Assimilation - Other 6 an inactive 4-amino-4- α-Kdo-(2->4)- an O - a peptidoglycan L-alanyl-γ-D- a [protein]- a [bis(guanylyl β-D-fructofuranose S-(hydroxymethyl) a [elongation- a cis-delta21-39- N-acetyl-α- N-β-aspartyl- queuosine at a [protein] Cofactor, Carrier, and Vitamin Biosynthesis superpathway of β-D- Carboxylate Degradation a reduced a peptidoglycan a [protein]- phosphoenol an L-alanyl- biotin biosynthesis I flavin biosynthesis I (bacteria and plants) menaquinol-9 biosynthesis pyruvate decarboxylation to acetyl CoA I ribonucleoside SAM deoxy-α-L- α-Kdo-(2->6)- methylguanine glutamyl-meso-2,6- FAD molybdopterin) a [glutamine- (R)-β-lysine Factor-EF- oxo-40-methyl- D-muramoyl- glu position 34 C-terminal glu FtsX superpathway of ubiquinol-8 cob(II)yrinate a,c- superpathway of menaquinol-8 biosynthesis I superpathway of [2Fe-2S] iron-sulfur ubiquinol-8 biosynthesis superpathway of tetrahydrofolate biosynthesis superpathway of adenosylcobalamin salvage from cobinamide I NAD salvage thiamine diphosphate salvage II 5-methoxybenzimidazolyl adenosylcobamide Aromatic Compound Biosynthesis Fermentation mixed acid fermentation L-ascorbate degradation L-ascorbate D-galacturonate superpathway of D-glucarate acetoacetate L-cysteine dimer with L-threonine cys ATP 1-phosphate glutathione L-arginine dGDP pyruvate [tRNA Pro ] ATP FtsE RS07365 RS13480 glucuronosides degradation acrylonitrile flavodoxin synthetase]- Asp biosynthesis (early decarboxylation) demethylmenaquinol-8 biosynthesis I biosynthesis from adenosylcobinamide-GDP II (bacterial, aerobic) and D-galactarate degradation degradation triphosphate arabinopyranosyl lipid IV (E.
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