Variations on a Theme: Synthesis and Modification of Plant Benzoic Acids
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Structure Activity Relationship of Phenolic Acid Inhibitors of Α-Synuclein fibril Formation and Toxicity
ORIGINAL RESEARCH ARTICLE published: 05 August 2014 AGING NEUROSCIENCE doi: 10.3389/fnagi.2014.00197 Structure activity relationship of phenolic acid inhibitors of α-synuclein fibril formation and toxicity Mustafa T. Ardah 1, Katerina E. Paleologou 2, Guohua Lv 3, Salema B. Abul Khair 1, Abdulla S. Kazim 1, Saeed T. Minhas 4, Taleb H. Al-Tel 5, Abdulmonem A. Al-Hayani 6, Mohammed E. Haque 1, David Eliezer 3 and Omar M. A. El-Agnaf 1,7* 1 Department of Biochemistry, College of Medicine and Health Science, United Arab Emirates University, Al Ain, UAE 2 Department of Molecular Biology and Genetics, Democritus University of Thrace, Alexandroupolis, Greece 3 Department of Biochemistry, Weill Cornell Medical College, Cornell University, New York, NY, USA 4 Department of Anatomy, College of Medicine and Health Science, United Arab Emirates University, Al Ain, UAE 5 College of Pharmacy and Sharjah Institute for Medical Research, University of Sharjah, Sharjah, UAE 6 Department of Anatomy, Faculty of Medicine, King Abdulaziz University, Jeddah, Saudi Arabia 7 Faculty of Medicine, King Abdel Aziz University, Jeddah, Saudi Arabia Edited by: The aggregation of α-synuclein (α-syn) is considered the key pathogenic event in many Edward James Calabrese, University neurological disorders such as Parkinson’s disease (PD), dementia with Lewy bodies and of Massachusetts/Amherst, USA multiple system atrophy, giving rise to a whole category of neurodegenerative diseases Reviewed by: known as synucleinopathies. Although the molecular basis of α-syn toxicity has not been Kenjiro Ono, Kanazawa University Graduate School of Medical precisely elucidated, a great deal of effort has been put into identifying compounds that Science, Japan could inhibit or even reverse the aggregation process. -
Ligand-Induced Conformational Rearrangements Promote Interaction Between The
Ligand-Induced Conformational Rearrangements Promote Interaction between the Escherichia coli Enterobactin Biosynthetic Proteins EntE and EntB† †This work was supported by Discovery Grant 341983-07 from the Natural Sciences and Engi- neering Research Council of Canada to PDP Sofia Khalil and Peter D. Pawelek* Department of Chemistry and Biochemistry, Concordia University, 7141 Sherbrooke St., W., Montreal, Quebec, Canada, H4B 1R6 *Correspondence should be addressed to: Peter D. Pawelek, Tel: 514-848-2424 ext. 3118; Fax: 514-848-2868; E-mail: [email protected] Running title: Efficient EntE-EntB interaction requires 2,3-dihydroxybenzoic acid Abbreviations The following abbreviations are used in this manuscript: 2,3-DHB: 2,3-dihydroxybenzoic acid; 2,5-DHB: 2,5-dihydroxybenzoic acid; 3,5-DHB: 3,5-dihydroxybenzoic acid; AMP: adenosine monophosphate; ArCP: aryl carrier protein; ATP: adenosine triphosphate; CD: circular dichro- ism; DTT: dithiothreitol; FRET: fluorescence resonance energy transfer; H6-EntB: purified, re- combinant hexahistidine-tagged E. coli EntB; H6-EntE: purified, recombinant hexahistidine- tagged E. coli EntE; ICL: isochorismate lyase; ITC: isothermal titration calorimetry; NRPS: non- ribosomal peptide synthesis; PDB: Protein Data Bank; RMSD: root mean square deviation; SDS- PAGE: sodium dodecyl sulfate polyacrylamide gel electrophoresis; TCEP: tris(2- carboxyethyl)phosphine. 2 Abstract Siderophores are small-molecule iron chelators that many bacteria synthesize and secrete in or- der to survive in iron-depleted environments. Biosynthesis of enterobactin, the E. coli catecho- late siderophore, requires adenylation of 2,3-DHB by the cytoplasmic enzyme EntE. The DHB- AMP product is then transferred to the active site of holo-EntB subsequent to formation of an EntE-EntB complex. -
Monocyclic Phenolic Acids; Hydroxy- and Polyhydroxybenzoic Acids: Occurrence and Recent Bioactivity Studies
Molecules 2010, 15, 7985-8005; doi:10.3390/molecules15117985 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.com/journal/molecules Review Monocyclic Phenolic Acids; Hydroxy- and Polyhydroxybenzoic Acids: Occurrence and Recent Bioactivity Studies Shahriar Khadem * and Robin J. Marles Natural Health Products Directorate, Health Products and Food Branch, Health Canada, 2936 Baseline Road, Ottawa, Ontario K1A 0K9, Canada * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-613-954-7526; Fax: +1-613-954-1617. Received: 19 October 2010; in revised form: 3 November 2010 / Accepted: 4 November 2010 / Published: 8 November 2010 Abstract: Among the wide diversity of naturally occurring phenolic acids, at least 30 hydroxy- and polyhydroxybenzoic acids have been reported in the last 10 years to have biological activities. The chemical structures, natural occurrence throughout the plant, algal, bacterial, fungal and animal kingdoms, and recently described bioactivities of these phenolic and polyphenolic acids are reviewed to illustrate their wide distribution, biological and ecological importance, and potential as new leads for the development of pharmaceutical and agricultural products to improve human health and nutrition. Keywords: polyphenols; phenolic acids; hydroxybenzoic acids; natural occurrence; bioactivities 1. Introduction Phenolic compounds exist in most plant tissues as secondary metabolites, i.e. they are not essential for growth, development or reproduction but may play roles as antioxidants and in interactions between the plant and its biological environment. Phenolics are also important components of the human diet due to their potential antioxidant activity [1], their capacity to diminish oxidative stress- induced tissue damage resulted from chronic diseases [2], and their potentially important properties such as anticancer activities [3-5]. -
Purification and Characterization of a Soluble Salicylic Acid-Binding
Proc. Natl. Acad. Sci. USA Vol. 90, pp. 9533-9537, October 1993 Biochemistry Purification and characterization of a soluble salicylic acid-binding protein from tobacco (monoclonal antibody/pathogenesis-related proteins/plant defense mechanism/plant signal transduction/systemic acquired resistance) ZHIXIANG CHEN, JOSEPH W. RICIGLIANO, AND DANIEL F. KLESSIG* Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, NJ 08855-0759 Communicated by Charles S. Levings III, July 12, 1993 (received for review May 11, 1993) ABSTRACT Previously, we identified a soluble salicylic SA in the induction of defense responses is provided by the acid (SA)-binding protein (SABP) in tobacco whose properties transgenic tobacco plants which contain and constitutively suggest that it may play a role in transmitting the SA signal express the nahG gene encoding salicylate hydroxylase from during plant defense responses. This SA-binding activity has Pseudomonas putida (21). In these transgenic plants, induc- been purified 250-fold by conventional chromatography and tion of SAR by inoculation with tobacco mosaic virus was was found to copurify with a 280-kDa protein. Monoclonal blocked, presumably due to the destruction of the SA signal antibodies capable of immunoprecipitating the SA-binding by the hydroxylase. activity also immunoprecipitated the 280-kDa protein, indicat- We have been interested in identifying cellular compo- ing that it was responsible for binding SA. These antibodies also nent(s) which directly interact with SA, as a first step to recognized the 280-kDa protein in immunoblots ofthe partially elucidate the mechanism(s) of action of SA in plant signal purified SABP fraction or the crude extract. -
Curriculum Vitae
Characterization of Heme Transport in Pseudomonas aeruginosa and the Preferential Pathway for Heme Uptake Item Type dissertation Authors Smith, Aaron Dennison Publication Date 2015 Abstract Bacterial pathogens require iron for their survival and virulence and have evolved multiple mechanisms to acquire this scarce micro-nutrient. The Gram-negative opportunistic pathogen Pseudomonas aeruginosa acquires heme as an iron source through the ... Keywords ABC transporter; iron acquisition; outer membrane receptor; transporter; ATP-Binding Cassette Transporters; Heme; Pseudomonas aeruginosa Download date 24/09/2021 16:37:31 Link to Item http://hdl.handle.net/10713/4622 Curriculum Vitae Aaron Dennison Smith Education: University of Maryland, Baltimore (2008-present) Department of Pharmaceutical Sciences School of Pharmacy GPA: 3.92 Degree: Ph.D. Expected Date of Degree: May 2015 Dissertation: Characterization of Heme Transport in Pseudomonas aeruginosa and the Preferential Pathway for Heme Uptake University of Maryland Baltimore County (2002-2007) Department of Biochemistry and Molecular Biology GPA: 3.1 Degree: B.S. Date of Degree: July 2007 Employment: Graduate Research Assistant (2008-present) Department of Pharmaceutical Sciences School of Pharmacy, University of Maryland, Baltimore Technical Director (2006-2008) Chemspec, Inc. Baltimore, MD Teaching Experience: Teaching Assistant (2008-2009) School of Pharmacy, University of Maryland, Baltimore PharmD courses: Medicinal Chemistry, Microbiology, Pharmacokinetics Resource Teacher (2006) Vertically Integrated Partnerships K-16 Internship University of Maryland Baltimore County Leadership Opportunities: Graduate Recruitment Strategies Taskforce Committee (2012-2013) President: Pharmacy Graduate Student Association (2009-2010) Team Captain: PSC Race for the Cure (2008-2010) Presentations: Characterization of the outer membrane heme receptors and the preferential pathway for heme uptake in Pseudomonas aeruginosa. -
Structure of the Entb Multidomain Nonribosomal Peptide Synthetase and Functional Analysis of Its Interaction with the Ente Adenylation Domain
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Chemistry & Biology 13, 409–419, April 2006 ª2006 Elsevier Ltd All rights reserved DOI 10.1016/j.chembiol.2006.02.005 Structure of the EntB Multidomain Nonribosomal Peptide Synthetase and Functional Analysis of Its Interaction with the EntE Adenylation Domain Eric J. Drake,1,2 David A. Nicolai,1 a downstream domain. Additional catalytic domains and Andrew M. Gulick1,2,* that exist in NRPSs include N-methylation and epimeri- 1 Hautpman-Woodward Medical Research Institute zation domains [1, 5]. The NRPS carrier protein domains 700 Ellicott Street contain a conserved serine that is posttranslationally Buffalo, New York 14203 modified by holo-ACP synthases with a PPant cofactor 2 Department of Structural Biology [6] and are similar to acyl carrier proteins involved in The State University of New York at Buffalo other cellular processes, including fatty acid biosynthe- Buffalo, New York 14260 sis and metabolism and polyketide biosynthesis. E. coli contains a single NRPS system that is used in the synthesis of the siderophore enterobactin (Fig- Summary ure 1A). The enterobactin molecule contains three cop- ies of a dipeptide of 2,3-dihydroxybenzoic acid (DHB) Nonribosomal peptide synthetases are modular pro- and serine [7]. The serine molecules form a trilactone teins that operate in an assembly line fashion to ring between the carboxylate of one residue and the bind, modify, and link amino acids. In the E. coli entero- side chain hydroxyl of the next. Produced and secreted bactin NRPS system, the EntE adenylation domain during iron-limiting conditions, the enterobactin mole- catalyzes the transfer of a molecule of 2,3-dihydroxy- cule chelates an Fe3+ ion and is then taken up into the benzoic acid to the pantetheine cofactor of EntB. -
Iron Transport Machinery: a Potential Therapeutic Target in Escherichia Coli Clorissa L
University of South Carolina Scholar Commons Theses and Dissertations 2018 Iron Transport Machinery: A Potential Therapeutic Target In Escherichia Coli Clorissa L. Washington – Hughes University of South Carolina Follow this and additional works at: https://scholarcommons.sc.edu/etd Part of the Chemistry Commons Recommended Citation Washington – Hughes, C. L.(2018). Iron Transport Machinery: A Potential Therapeutic Target In Escherichia Coli. (Doctoral dissertation). Retrieved from https://scholarcommons.sc.edu/etd/4885 This Open Access Dissertation is brought to you by Scholar Commons. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. IRON TRANSPORT MACHINERY: A POTENTIAL THERAPEUTIC TARGET IN ESCHERICHIA COLI by Clorissa L. Washington – Hughes Bachelor of Science Benedict College, 2009 Submitted in Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy in Chemistry College of Arts and Sciences University of South Carolina 2018 Accepted by: F. Wayne Outten, Major Professor John H. Dawson, Committee Member Sheryl L. Wiskur, Committee Member Beth Krizek, Committee Member Cheryl L. Addy, Vice Provost and Dean of the Graduate School © Copyright Clorissa L. Washington-Hughes, 2018 All Rights Reserved ii DEDICATION Dedicated to my father, Billy Wayne Washington, Sr. and my great – grandfather, Bishop Wallace Snow iii ACKNOWLEDGEMENTS First, I would like to thank my Lord and Savior Jesus Christ for allowing me to start and complete my PhD journey. I would like to thank my research advisor, Dr. F. Wayne Outten for accepting me into his laboratory. When I first started in the lab, I had no idea what I was in for. -
Molecular Docking Study on Several Benzoic Acid Derivatives Against SARS-Cov-2
molecules Article Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 Amalia Stefaniu *, Lucia Pirvu * , Bujor Albu and Lucia Pintilie National Institute for Chemical-Pharmaceutical Research and Development, 112 Vitan Av., 031299 Bucharest, Romania; [email protected] (B.A.); [email protected] (L.P.) * Correspondence: [email protected] (A.S.); [email protected] (L.P.) Academic Editors: Giovanni Ribaudo and Laura Orian Received: 15 November 2020; Accepted: 1 December 2020; Published: 10 December 2020 Abstract: Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids residues from the active binding site of SARS-CoV-2 main protease, compared to boceprevir. Deep structural insights and quantum chemical reactivity analysis according to Koopmans’ theorem, as a result of density functional theory (DFT) computations, are reported. Additionally, drug-likeness assessment in terms of Lipinski’s and Weber’s rules for pharmaceutical candidates, is provided. The outcomes of docking and key molecular descriptors and properties were forward analyzed by the statistical approach of principal component analysis (PCA) to identify the degree of their correlation. The obtained results suggest two promising candidates for future drug development to fight against the coronavirus infection. Keywords: SARS-CoV-2; benzoic acid derivatives; gallic acid; molecular docking; reactivity parameters 1. Introduction Severe acute respiratory syndrome coronavirus 2 is an international health matter. Previously unheard research efforts to discover specific treatments are in progress worldwide. -
Copyright by Nicola Mary Lisa Davies 2006
Copyright by Nicola Mary Lisa Davies 2006 The Dissertation Committee for Nicola Mary Lisa Davies Certifies that this is the approved version of the following dissertation: Iron Acquisition by Shigella dysenteriae and Shigella flexneri Committee: Shelley M. Payne, Supervisor Charles F. Earhart Richard J. Meyer Ian J. Molineux Martin Poenie Iron Acquisition by Shigella dysenteriae and Shigella flexneri by Nicola Mary Lisa Davies, B.Sc.H. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin August 2006 Dedication To Dad and Mark Acknowledgements I would like to thank Shelley Payne for her patience, support and guidance over the last five years. I would also like to acknowledge the support and assistance of all of the members of the Payne lab. I am especially grateful to Erin Murphy and Alexandra Mey for many scientific discussions and excellent suggestions, and to Keren Hilgendorf for technical assistance. v Iron Acquisition by Shigella dysenteriae and Shigella flexneri Publication No._____________ Nicola Mary Lisa Davies, PhD The University of Texas at Austin, 2006 Supervisor: Shelley M. Payne Shigella dysenteriae and Shigella flexneri are Gram-negative facultative intracellular pathogens that cause bacillary dysentery. Iron is an essential micronutrient for these pathogens and they have evolved several systems to obtain iron. The Feo and Sit systems are involved in acquisition of ferrous iron and the TonB-dependant systems transport ferric iron and heme. In S. flexneri, a strain with a defect in the Sit system exhibited decreased fitness in the intracellular environment compared to the wild type. -
Design and Testing of Safer, More Effective Preservatives For
Research Article pubs.acs.org/journal/ascecg Design and Testing of Safer, More Effective Preservatives for Consumer Products ¶ † ‡ † § † ⊥ Heather L. Buckley,*, , William M. Hart-Cooper, , Jong H. Kim, , David M. Faulkner, § § # ‡ ∇ Luisa W. Cheng, Kathleen L. Chan, Christopher D. Vulpe, William J. Orts, Susan E. Amrose, ¶ and Martin J. Mulvihill ¶ Berkeley Center for Green Chemistry, College of Chemistry, University of California Berkeley, Berkeley, California 94720, United States ‡ Bioproducts Research Unit, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, California 94710, United States § Foodborne Toxin Detection and Prevention Research Unit, Western Regional Research Center, USDA-ARS, 800 Buchanan St., Albany, California 94710, United States ⊥ Berkeley Center for Green Chemistry, Department of Nutritional Sciences and Toxicology, University of California Berkeley, Berkeley, California 94720, United States # Physiological Sciences, Center for Environmental and Human Toxicology, University of Florida, Gainesville, Florida 32611, United States ∇ Civil and Environmental Engineering, University of California Berkeley, Berkeley, California 94720, United States *S Supporting Information ABSTRACT: Preservatives deter microbial growth, providing crucial functions of safety and durability in composite materials, formulated products, and food packaging. Concern for human health and the environmental impact of some preservatives has led to regulatory restrictions and public pressure to remove individual classes of compounds, such as parabens and chromated copper arsenate, from consumer products. Bans do not address the need for safe, effective alternative preservatives, which are critical for both product performance (including lifespan and therefore life cycle metrics) and consumer safety. In this work, we studied both the safety and efficacy of a series of phenolic preservatives and compared them to common preservatives found in personal care products and building materials. -
Exploring the Antioxidant Features of Polyphenols by Spectroscopic and Electrochemical Methods
antioxidants Article Exploring the Antioxidant Features of Polyphenols by Spectroscopic and Electrochemical Methods Berta Alcalde, Mercè Granados and Javier Saurina * Department of Chemical Engineering and Analytical Chemistry, University of Barcelona, Martí i Franquès 1-11, 08028 Barcelona, Spain; [email protected] (B.A.); [email protected] (M.G.) * Correspondence: [email protected]; Tel.: +34-93-403-4873 Received: 16 October 2019; Accepted: 30 October 2019; Published: 31 October 2019 Abstract: This paper evaluates the antioxidant ability of polyphenols as a function of their chemical structures. Several common food indexes including Folin-Ciocalteau (FC), ferric reducing antioxidant power (FRAP) and trolox equivalent antioxidant capacity (TEAC) assays were applied to selected polyphenols that differ in the number and position of hydroxyl groups. Voltammetric assays with screen-printed carbon electrodes were also recorded in the range of 0.2 to 0.9 V (vs. Ag/AgCl − reference electrode) to investigate the oxidation behavior of these substances. Poor correlations among assays were obtained, meaning that the behavior of each compound varies in response to the different methods. However, we undertook a comprehensive study based on principal component analysis that evidenced clear patterns relating the structures of several compounds and their antioxidant activities. Keywords: antioxidant index; differential pulse voltammetry; polyphenols; index correlation; structure-activity 1. Introduction Epidemiological studies have shown that antioxidant molecules such as polyphenols may help in the prevention of cardiovascular and neurological diseases, cancer and aging-related disorders [1–4]. Antioxidants act against excessively high levels of free radicals, the harmful products of aerobic metabolism that can produce oxidative damage in the organism [5]. -
The Flavonoid Metabolite 2,4,6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: a Potential Role in Cancer Prevention" (2019)
University of Kentucky UKnowledge Entomology Faculty Publications Entomology 3-26-2019 The lF avonoid Metabolite 2,4,6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: A Potential Role in Cancer Prevention Ranjini Sankaranarayanan South Dakota State University Chaitanya K. Valiveti South Dakota State University Ramesh Kumar Dhandapani University of Kentucky, [email protected] Severine Van Slambrouck South Dakota State University Siddharth S. Kesharwani South Dakota State University See next page for additional authors Right click to open a feedback form in a new tab to let us know how this document benefits oy u. Follow this and additional works at: https://uknowledge.uky.edu/entomology_facpub Part of the Oncology Commons Repository Citation Sankaranarayanan, Ranjini; Valiveti, Chaitanya K.; Dhandapani, Ramesh Kumar; Van Slambrouck, Severine; Kesharwani, Siddharth S.; Seefeldt, Teresa; Scaria, Joy; Tummala, Hemachand; and Bhat, G. Jayarama, "The Flavonoid Metabolite 2,4,6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: A Potential Role in Cancer Prevention" (2019). Entomology Faculty Publications. 183. https://uknowledge.uky.edu/entomology_facpub/183 This Article is brought to you for free and open access by the Entomology at UKnowledge. It has been accepted for inclusion in Entomology Faculty Publications by an authorized administrator of UKnowledge. For more information, please contact [email protected]. Authors Ranjini Sankaranarayanan, Chaitanya K. Valiveti, Ramesh Kumar Dhandapani, Severine Van Slambrouck, Siddharth S. Kesharwani, Teresa Seefeldt, Joy Scaria, Hemachand Tummala, and G. Jayarama Bhat The Flavonoid Metabolite 2,4,6-Trihydroxybenzoic Acid Is a CDK Inhibitor and an Anti-Proliferative Agent: A Potential Role in Cancer Prevention Notes/Citation Information Published in Cancers, v.