Planktonic Chlorophyceae from the Lower Ebro River (Spain)
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Rapid Assay Replicate
Algae Analysis Report and Data Set Customer ID: 000 Tracking Code: 200014-000 Sample ID: Rapid Assay Replicate: . Customer ID: 000 Sample Date: 4/30/2020 Sample Level: Epi Job ID: 1 Station: Sample Station Sample Depth: 0 System Name: Sample Lake Site: Sample Site Preservative: Glutaraldehyde Report Notes: Sample Report Note Division: Bacillariophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 1109 Diatoma tenuis . Vegetative 1.00 1000936 Lindavia intermedia . Vegetative 18.00 9123 Nitzschia palea . Vegetative 1.00 1293 Stephanodiscus niagarae . Vegetative 2.00 Summary for Division ~ Bacillariophyta (4 detail records) Sum Total Bacillariophyta 22.00 Division: Chlorophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 2683 *Chlorococcaceae spp . 2-9.9 um Vegetative 1.00 spherical 2491 Schroederia judayi . Vegetative 25.00 Summary for Division ~ Chlorophyta (2 detail records) Sum Total Chlorophyta 26.00 = Identification is Uncertain 200014-000 Monday, January 18, 2021 * = Family Level Identification Phytoplankton - Rapid Assay Page 2 of 13 Division: Cryptophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 3015 Cryptomonas erosa . Vegetative 15.00 3043 Rhodomonas minuta . nannoplanctica . Vegetative 2.00 Summary for Division ~ Cryptophyta (2 detail records) Sum Total Cryptophyta 17.00 Division: Cyanophyta Taxa ID Genus Species Subspecies Variety Form Morph Structure Relative Concentration 4041 Aphanizomenon flos-aquae . -
Pediastrum Species (Hydrodictyaceae, Sphaeropleales) in Phytoplankton of Sumin Lake (£Êczna-W£Odawa Lakeland)
Vol. 73, No. 1: 39-46, 2004 ACTA SOCIETATIS BOTANICORUM POLONIAE 39 PEDIASTRUM SPECIES (HYDRODICTYACEAE, SPHAEROPLEALES) IN PHYTOPLANKTON OF SUMIN LAKE (£ÊCZNA-W£ODAWA LAKELAND) AGNIESZKA PASZTALENIEC, MA£GORZATA PONIEWOZIK Department of Botany and Hydrobiology, Catholic University of Lublin C.K. Norwida 4, 20-061 Lublin, Poland e-mail: [email protected] (Received: April 7, 2003. Accepted: July 18, 2003) ABSTRACT During studies of phytoplankton in Sumin Lake (£êczna-W³odawa Lakeland), conducted from May till Sep- tember 2001 and 2002, 15 taxa of the genus Pediastrum (Hydrodictyaceae, Sphaeropleales) were found. Among them there were common species as Pediastrum boryanum, P. duplex, P. tetras and P. simplex, but also rare spe- cies as P. integrum or P. kawraiskyi. An especially interesting species was P. orientale, the taxon that until now has not been noted in phytoplankton of Polish water bodies. The paper gives descriptions of the genus Pediastrum coenobia and physico-chemical conditions of the habitat. The original documentation of Pediastrum taxa is added. KEY WORDS: Pediastrum taxa, Chlorophyta, phytoplankton, £êczna-W³odawa Lakeland. INRTODUCTION rved in palynological preparations (Jankovská and Komá- rek 2000, Komárek and Jankovská 2001; Nielsen and Lakes of £êczna-W³odawa Lakeland are the only group Sørensen 1992). in Poland located beyond the limits of a continental glacier The taxonomical research of the genus Pediastrum was of the last glaciation. The genesis of lakes is still disputa- not conducted in phytoplankton of £êczna-W³odawa Lake- ble, but the most of them have a termo-karst origin (Hara- land lakes. Only some information on occurrence of this simiuk and Wojtanowicz 1998). -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Quantification of DNA Content in Freshwater Microalgae Using Flow Cytometry: a Modified Protocol for Selected Green Microalgae
Fottea 11(2): 317–328, 2011 317 Quantification of DNA content in freshwater microalgae using flow cytometry: a modified protocol for selected green microalgae Petra MAZALOVÁ , Petra ŠARHANOVÁ , Vl a d a n On d ř e j & Aloisie PO u l í č k ov á Department of Botany, Faculty of Science, Palacký University Olomouc, Šlechtitelů 11, CZ–783 71 Olomouc, Czech Republic; e–mail: [email protected] Abstract: The study of genome size variation in microalgae lags behind that of comparable research in higher plants and seaweeds. This situation is essentially caused by: (1) difficulties in obtaining sufficient biomass for experiments; (2) problems with protoplast isolation due to cell–wall heterogeneity and complexity; and (3) the absence of suitable standards for routine measurements. We propose a multi–step protocol that leads to the quantification of DNA content in desmids using flow cytometry. We present detailed culture conditions, the minimal biomass necessary for three repetitive measurements, a method to isolate protoplasts and selection of suitable standards. Our protocol, which is mainly based on studies with higher plants and commercially available enzyme mixtures, is useful in Streptophyta, especially members of the Zygnematophyceae, because of their close phylogenetic relationship to higher plants, in particular the similarity of their cell wall organization. Moreover, the suggested protocol also works for some Chlorophyta (Chloroidium ellipsoideum, Tetraselmis subcordiformis) and Heterokontophyta (Tribonema vulgare). We suggest and characterize a new standard for flow cytometry of microalgae (Micrasterias pinnatifida). Modification of the enzyme mixture is probably necessary for microalgae whose cell walls are surrounded by a mucilaginous envelope (Planktosphaeria), those that contain alganan (Chlorella), monads with a pellicle or chlamys (Euglena, Chlamydomonas). -
Community Characteristics Analysis of Eukaryotic Microplankton Via ITS Gene Metabarcoding Based on Environmental DNA in Lower Reaches of Qiantang River, China
Open Journal of Animal Sciences, 2021, 11, 105-124 https://www.scirp.org/journal/ojas ISSN Online: 2161-7627 ISSN Print: 2161-7597 Community Characteristics Analysis of Eukaryotic Microplankton via ITS Gene Metabarcoding Based on Environmental DNA in Lower Reaches of Qiantang River, China Aiju Zhang1, Jun Wang1, Yabin Hao1, Shanshi Xiao1, Wei Luo1, Ganxiang Wang2, Zhiming Zhou1 1Agriculture Ministry Key Laboratory of Healthy Freshwater Aquaculture, Key Laboratory of Freshwater Aquaculture Genetic and Breeding of Zhejiang Province, Zhejiang Research Center of East China Sea Fishery Research Institute, Zhejiang Institute of Freshwater Fisheries, Huzhou, China 2Pinghu Fisheries Technology Promotion Center, Pinghu, China How to cite this paper: Zhang, A.J., Wang, Abstract J., Hao, Y.B., Xiao, S.S., Luo, W., Wang, G.X. and Zhou, Z.M. (2021) Community Eukaryotic microplankton plays an important role in water biotic community Characteristics Analysis of Eukaryotic and in maintaining the stability of water ecosystems. Environmental DNA Microplankton via ITS Gene Metabarcod- metabarcoding provides the opportunity to integrate traditional and emerg- ing Based on Environmental DNA in Low- er Reaches of Qiantang River, China. Open ing approaches to discover more new species, and develop molecular biotic Journal of Animal Sciences, 11, 105-124. indices that can be more rapidly, frequently, and robustly used in water qual- https://doi.org/10.4236/ojas.2021.112009 ity assessments. In order to examine assemblages of eukaryotic microplank- ton in lower reaches of Qiantang River, ITS gene metabarcoding technology Received: January 13, 2021 based on environmental DNA was carried out. As a result, various species of Accepted: March 30, 2021 Published: April 2, 2021 phytoplankton, fungi and zooplankton were annotated on. -
Biovolumes and Size-Classes of Phytoplankton in the Baltic Sea
Baltic Sea Environment Proceedings No.106 Biovolumes and Size-Classes of Phytoplankton in the Baltic Sea Helsinki Commission Baltic Marine Environment Protection Commission Baltic Sea Environment Proceedings No. 106 Biovolumes and size-classes of phytoplankton in the Baltic Sea Helsinki Commission Baltic Marine Environment Protection Commission Authors: Irina Olenina, Centre of Marine Research, Taikos str 26, LT-91149, Klaipeda, Lithuania Susanna Hajdu, Dept. of Systems Ecology, Stockholm University, SE-106 91 Stockholm, Sweden Lars Edler, SMHI, Ocean. Services, Nya Varvet 31, SE-426 71 V. Frölunda, Sweden Agneta Andersson, Dept of Ecology and Environmental Science, Umeå University, SE-901 87 Umeå, Sweden, Umeå Marine Sciences Centre, Umeå University, SE-910 20 Hörnefors, Sweden Norbert Wasmund, Baltic Sea Research Institute, Seestr. 15, D-18119 Warnemünde, Germany Susanne Busch, Baltic Sea Research Institute, Seestr. 15, D-18119 Warnemünde, Germany Jeanette Göbel, Environmental Protection Agency (LANU), Hamburger Chaussee 25, D-24220 Flintbek, Germany Slawomira Gromisz, Sea Fisheries Institute, Kollataja 1, 81-332, Gdynia, Poland Siv Huseby, Umeå Marine Sciences Centre, Umeå University, SE-910 20 Hörnefors, Sweden Maija Huttunen, Finnish Institute of Marine Research, Lyypekinkuja 3A, P.O. Box 33, FIN-00931 Helsinki, Finland Andres Jaanus, Estonian Marine Institute, Mäealuse 10 a, 12618 Tallinn, Estonia Pirkko Kokkonen, Finnish Environment Institute, P.O. Box 140, FIN-00251 Helsinki, Finland Iveta Ledaine, Inst. of Aquatic Ecology, Marine Monitoring Center, University of Latvia, Daugavgrivas str. 8, Latvia Elzbieta Niemkiewicz, Maritime Institute in Gdansk, Laboratory of Ecology, Dlugi Targ 41/42, 80-830, Gdansk, Poland All photographs by Finnish Institute of Marine Research (FIMR) Cover photo: Aphanizomenon flos-aquae For bibliographic purposes this document should be cited to as: Olenina, I., Hajdu, S., Edler, L., Andersson, A., Wasmund, N., Busch, S., Göbel, J., Gromisz, S., Huseby, S., Huttunen, M., Jaanus, A., Kokkonen, P., Ledaine, I. -
Permian–Triassic Non-Marine Algae of Gondwana—Distributions
Earth-Science Reviews 212 (2021) 103382 Contents lists available at ScienceDirect Earth-Science Reviews journal homepage: www.elsevier.com/locate/earscirev Review Article Permian–Triassic non-marine algae of Gondwana—Distributions, natural T affinities and ecological implications ⁎ Chris Maysa,b, , Vivi Vajdaa, Stephen McLoughlina a Swedish Museum of Natural History, Box 50007, SE-104 05 Stockholm, Sweden b Monash University, School of Earth, Atmosphere and Environment, 9 Rainforest Walk, Clayton, VIC 3800, Australia ARTICLE INFO ABSTRACT Keywords: The abundance, diversity and extinction of non-marine algae are controlled by changes in the physical and Permian–Triassic chemical environment and community structure of continental ecosystems. We review a range of non-marine algae algae commonly found within the Permian and Triassic strata of Gondwana and highlight and discuss the non- mass extinctions marine algal abundance anomalies recorded in the immediate aftermath of the end-Permian extinction interval Gondwana (EPE; 252 Ma). We further review and contrast the marine and continental algal records of the global biotic freshwater ecology crises within the Permian–Triassic interval. Specifically, we provide a case study of 17 species (in 13 genera) palaeobiogeography from the succession spanning the EPE in the Sydney Basin, eastern Australia. The affinities and ecological im- plications of these fossil-genera are summarised, and their global Permian–Triassic palaeogeographic and stra- tigraphic distributions are collated. Most of these fossil taxa have close extant algal relatives that are most common in freshwater, brackish or terrestrial conditions, and all have recognizable affinities to groups known to produce chemically stable biopolymers that favour their preservation over long geological intervals. -
The Draft Genome of Hariotina Reticulata (Sphaeropleales
Protist, Vol. 170, 125684, December 2019 http://www.elsevier.de/protis Published online date 19 October 2019 ORIGINAL PAPER Protist Genome Reports The Draft Genome of Hariotina reticulata (Sphaeropleales, Chlorophyta) Provides Insight into the Evolution of Scenedesmaceae a,b,2 c,d,2 b e f Yan Xu , Linzhou Li , Hongping Liang , Barbara Melkonian , Maike Lorenz , f g a,g e,1 a,g,1 Thomas Friedl , Morten Petersen , Huan Liu , Michael Melkonian , and Sibo Wang a BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China b BGI Education Center, University of Chinese Academy of Sciences, Beijing, China c China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China d Department of Biotechnology and Biomedicine, Technical University of Denmark, Copenhagen, Denmark e University of Duisburg-Essen, Campus Essen, Faculty of Biology, Universitätsstr. 5, 45141 Essen, Germany f Department ‘Experimentelle Phykologie und Sammlung von Algenkulturen’ (EPSAG), University of Göttingen, Nikolausberger Weg 18, 37073 Göttingen, Germany g Department of Biology, University of Copenhagen, Copenhagen, Denmark Submitted October 9, 2019; Accepted October 13, 2019 Hariotina reticulata P. A. Dangeard 1889 (Sphaeropleales, Chlorophyta) is a common member of the summer phytoplankton of meso- to highly eutrophic water bodies with a worldwide distribution. Here, we report the draft whole-genome shotgun sequencing of H. reticulata strain SAG 8.81. The final assembly comprises 107,596,510 bp with over 15,219 scaffolds (>100 bp). This whole-genome project is publicly available in the CNSA (https://db.cngb.org/cnsa/) of CNGBdb under the accession number CNP0000705. © 2019 Elsevier GmbH. All rights reserved. Key words: Scenedesmaceae; genome; algae; comparative genomics. -
Biodiversity of Microscopic Green Algae from Desert Soil Crusts
Digital Commons @ Assumption University Honors Theses Honors Program 2020 Biodiversity of Microscopic Green Algae from Desert Soil Crusts Victoria Williamson Assumption College Follow this and additional works at: https://digitalcommons.assumption.edu/honorstheses Part of the Life Sciences Commons Recommended Citation Williamson, Victoria, "Biodiversity of Microscopic Green Algae from Desert Soil Crusts" (2020). Honors Theses. 69. https://digitalcommons.assumption.edu/honorstheses/69 This Honors Thesis is brought to you for free and open access by the Honors Program at Digital Commons @ Assumption University. It has been accepted for inclusion in Honors Theses by an authorized administrator of Digital Commons @ Assumption University. For more information, please contact [email protected]. BIODIVERSITY OF MICROSCOPIC GREEN ALGAE FROM DESERT SOIL CRUSTS Victoria Williamson Faculty Supervisor: Karolina Fučíková Natural Science Department A Thesis Submitted to Fulfill the Requirements of the Honors Program at Assumption College Spring 2020 Williamson 1 Abstract In the desert ecosystem, the ground is covered with soil crusts. Several organisms exist here, such as cyanobacteria, lichens, mosses, fungi, bacteria, and green algae. This most superficial layer of the soil contains several primary producers of the food web in this ecosystem, which stabilize the soil, facilitate plant growth, protect from water and wind erosion, and provide water filtration and nitrogen fixation. Researching the biodiversity of green algae in the soil crusts can provide more context about the importance of the soil crusts. Little is known about the species of green algae that live there, and through DNA-based phylogeny and microscopy, more can be understood. In this study, DNA was extracted from algal cultures newly isolated from desert soil crusts in New Mexico and California. -
JERICO-NEXT. Progress Report After Development Of
Joint European Research Infrastructure network for Coastal Observatory – Novel European eXpertise for coastal observaTories - JERICO-NEXT Deliverable title Progress report after development of microbial and molecular sensors Work Package Title WP 3 Innovation in Technology and Methodology Deliverable number D3.7 Description Progress report after development of microbial and molecular sensors Lead beneficiary IRIS Lead Authors Catherine Boccadoro (IRIS), Wilhelm Petersen (HZG), Bengt Karlson (SMHI), Florent Colas (Ifremer) Contributors Anne Vatland Krøvel, Mari Mæland Nilsen Submitted by Revision number 2.0 Revision Date 06 Oct. 2017 Security Public The JERICO-NEXT project is funded by the European Commission’s H2020 Framework Programme under grant agreement No. 654410 Project coordinator: Ifremer, France. JERICO-NEXT History Revision Date Modification Author Catherine 1.0 04 Oct. 2017 Complete version content added by all authors Boccadoro Catherine 2.0 06 Oct 2017 First revision by all authors Boccadoro Approvals Name Organisation Date Visa Coordinator Farcy Patrick Ifremer 12 octobre 2017 PF Petihakis George HCMR WP Leaders 10 octobre 2017 Delauney Laurent Ifremer PROPRIETARY RIGHTS STATEMENT Reference: JERICO-NEXT-WP3-D3.7- 6 Oct. 2017-V2.0 Page 2/46 JERICO-NEXT THIS DOCUMENT CONTAINS INFORMATION, WHICH IS PROPRIETARY TO THE JERICO-NEXT CONSORTIUM. NEITHER THIS DOCUMENT NOR THE INFORMATION CONTAINED HEREIN SHALL BE USED, DUPLICATED OR COMMUNICATED EXCEPT WITH THE PRIOR WRITTEN CONSENT OF THE JERICO-NEXT COORDINATOR. Reference: JERICO-NEXT-WP3-D3.7- -
Algal Composition of Microbiotic Crusts from the Central Desert of Baja California, Mexico
Great Basin Naturalist Volume 58 Number 4 Article 1 10-12-1998 Algal composition of microbiotic crusts from the Central Desert of Baja California, Mexico Valerie R. Flechtner John Carroll University, University Heights, Ohio Jeffrey R. Johansen John Carroll University, University Heights, Ohio William H. Clark Albertson College of Idaho, Caldwell, Idaho Follow this and additional works at: https://scholarsarchive.byu.edu/gbn Recommended Citation Flechtner, Valerie R.; Johansen, Jeffrey R.; and Clark, William H. (1998) "Algal composition of microbiotic crusts from the Central Desert of Baja California, Mexico," Great Basin Naturalist: Vol. 58 : No. 4 , Article 1. Available at: https://scholarsarchive.byu.edu/gbn/vol58/iss4/1 This Article is brought to you for free and open access by the Western North American Naturalist Publications at BYU ScholarsArchive. It has been accepted for inclusion in Great Basin Naturalist by an authorized editor of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. The Great Basin Naturalist PUBLISHED AT PROVO, UTAH, BY M.L. BEAN LIFE SCIENCE MUSEUM BRIGHAM YOUNG UNIVERSITY ISSN 0017-3614 VOLUME 58 31 OCTOBER 1998 No.4 Great Basin Naturalist 58(4), © 1998, pp. 295-311 ALGAL COMPOSITION OF MICROBIOTIC CRUSTS FROM THE CENTRAL DESERT OF BAJA CALIFORNIA, MEXICO Valerie R. Flechtner1, Jeffrey R. Johansenl, and William H. Clark2 ABSTRACT.-A total of 66 algal species representing 32 genera were recovered from soils of 10 sites in the Catavifia region of the Central Desert of Baja California, Mexico. The most common species encountered were the cyanophytes Nostoc commune and Schizothrix calcicola, the chlorophyte Myrmecia astigmatica, and the diatoms HantZ8chia amphioxys, Hantzschia amphyQxys f. -
Limnological Information Supporting the Development of Regional Nutrient Criteria for Alaskan Lakes
LIMNOLOGICAL INFORMATION SUPPORTING THE DEVELOPMENT OF REGIONAL NUTRIENT CRITERIA FOR ALASKAN LAKES Water Quality Monitoring and Trophic Assessment of Seven Lakes in the Matanuska-Susitna Borough J. A. Edmundson REGIONAL INFORMATION REPORT No. 2A03-24 Alaska Department of Fish and Game Division of Commercial Fisheries 333 Raspberry Road Anchorage, Alaska 99518-1599 August 2002 I The Regional Information Report Series was established in 1987 to provide an information access system for all unpublished division reports. These reports frequently serve diverse ad hoc informational purposes or archive basic uninterpreted data. To accommodate timely reporting ofrecently collected information. reports in this series undergo only limited internal review and may contain preliminary data; this information may be subsequently finalized and published in the formal literature. Consequently, these reports should not be cited without prior approval of the author or the Division of Commercial Fisheries. AUTHORS II,'" Jim A. Edmundson is the project leader for Central Region Limnology of the Alaska Department ofFish and Game, Division of Commercial Fisheries, 43961 Kalifornsky Beach Road, Suite B, Soldotna, AK 99669. "..• '''11I11 ,." "J " ,,j Product names used in this report are included for scientific completeness but do not constitute endorsement by Alaska Department of Fish and Game. " il"l I.~ II~ IH ""I' TABLE OF CONTENTS Section Page LIST OF TABLES .iii LIST OF FIGURES iv LIST OF APPENDICES viii ABSTRACT ix INTRODUCTION 1 Objectives . 3 Description of Study Site 3 METHODS 6 Data Gathering 6 Databases, Statistical Analysis, and Trophic State Index 15 RESULTS and DISCUSSION 16 Physical Conditions 16 Chemical Characteristics 22 Nutrients 29 Particulate Organic Carbon '" 34 Phytoplankton 34 Nutrient-Chlorophyll Models 36 Trophic Status 43 CONCLUSIONS and RECOMMENDATIONS 46 ACKN"OWLEDGEMENTS 49 REFERENCES 49 ii ., LIST OF TABLES Table " ;I 1.