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A New Species of the Bay Goby Genus Eucyclogobius, Endemic to Southern California: Evolution, Conservation, and Decline
RESEARCH ARTICLE A New Species of the Bay Goby Genus Eucyclogobius, Endemic to Southern California: Evolution, Conservation, and Decline Camm C. Swift1¤, Brenton Spies2, Ryan A. Ellingson2,3, David K. Jacobs2* 1 Emeritus, Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, California 90007, United States of America, 2 Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90095, United States of America, 3 Department of Biological Sciences, California State University, Los Angeles, California 90032, United States of America ¤ Current address: 6465 Elmo Road, Cumming, Georgia 30028–4720, United States of America * [email protected] a11111 Abstract A geographically isolated set of southern localities of the formerly monotypic goby genus Eucyclogobius is known to be reciprocally monophyletic and substantially divergent in mito- chondrial sequence and nuclear microsatellite-based phylogenies relative to populations to OPEN ACCESS the north along the California coast. To clarify taxonomic and conservation status, we con- ducted a suite of analyses on a comprehensive set of morphological counts and measures Citation: Swift CC, Spies B, Ellingson RA, Jacobs DK (2016) A New Species of the Bay Goby Genus from across the range of Eucyclogobius and describe the southern populations as a new Eucyclogobius, Endemic to Southern California: species, the Southern Tidewater Goby, Eucyclogobius kristinae, now separate from the Evolution, Conservation, and Decline. PLoS ONE Northern Tidewater Goby Eucyclogobius newberryi (Girard 1856). In addition to molecular 11(7): e0158543. doi:10.1371/journal.pone.0158543 distinction, adults of E. kristinae are diagnosed by: 1) loss of the anterior supratemporal lat- Editor: Tzen-Yuh Chiang, National Cheng-Kung eral-line canals resulting in higher neuromast counts, 2) lower pectoral and branched caudal University, TAIWAN ray counts, and 3) sets of measurements identified via discriminant analysis. -
Zootaxa: Systematics of the Genus Scleroplax Rathbun, 1893
Zootaxa 1344: 33–41 (2006) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ ZOOTAXA 1344 Copyright © 2006 Magnolia Press ISSN 1175-5334 (online edition) Systematics of the genus Scleroplax Rathbun, 1893 (Crustacea: Brachyura: Pinnotheridae) ERNESTO CAMPOS Facultad de Ciencias, Universidad Autónoma de Baja California, Apartado Postal 2300, Ensenada, Baja California, 22800 México. E-mail: [email protected]; [email protected] Abstract The taxonomic status of the monotypic genus Scleroplax Rathbun, 1893, is evaluated and separated from other genera of the Pinnixa White, 1846, complex. Distinguishing characters of Scleroplax are a hard, subheptagonal and dorsally, highly convex carapace, and a third maxilliped with a propodus that extends to the end of the dactylus. The genera Scleroplax, Pinnixa, Austinixa Heard & Manning, 1997, Glassella Campos & Wicksten, 1997, Indopinnixa Manning & Morton, 1987, and Tetrias Rathbun, 1898, share a carapace than is wider than long and a distinct lateral exopod lobe on the third maxilliped, all of which may represent monophyletic characters. Updated information on the distribution and hosts of S. granulata Rathbun, 1893, indicate that the species now ranges from Vancouver Island, British Columbia, Canada to El Coyote estuary, Punta Abreojos, Baja California Sur, México. It inhabits burrows of the echiuroid Urechis caupo Fisher & MacGinitie, 1928, and the mud shrimps Neotrypaea californiensis (Dana, 1854), N. gigas (Dana, 1852) (new host record), Upogebia pugettensis (Dana, 1852), and occasionally U. macginiteorum Williams, 1986 (new host record). Key words: Crustacea, Brachyura, Pinnotheridae, Scleroplax, systematics, geographic distribution, new hosts Resumen El estatus taxonómico del género monotípico Scleroplax Rathbun, 1893, es evaluado y separado de otros géneros del complejo Pinnixa White, 1846. -
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism
Molecular Phylogeny of Echiuran Worms (Phylum: Annelida) Reveals Evolutionary Pattern of Feeding Mode and Sexual Dimorphism Ryutaro Goto1,2*, Tomoko Okamoto2, Hiroshi Ishikawa3, Yoichi Hamamura4, Makoto Kato2 1 Department of Marine Ecosystem Dynamics, Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan, 2 Graduate School of Human and Environmental Studies, Kyoto University, Kyoto, Japan, 3 Uwajima, Ehime, Japan, 4 Kure, Hiroshima, Japan Abstract The Echiura, or spoon worms, are a group of marine worms, most of which live in burrows in soft sediments. This annelid- like animal group was once considered as a separate phylum because of the absence of segmentation, although recent molecular analyses have placed it within the annelids. In this study, we elucidate the interfamily relationships of echiuran worms and their evolutionary pattern of feeding mode and sexual dimorphism, by performing molecular phylogenetic analyses using four genes (18S, 28S, H3, and COI) of representatives of all extant echiuran families. Our results suggest that Echiura is monophyletic and comprises two unexpected groups: [Echiuridae+Urechidae+Thalassematidae] and [Bone- lliidae+Ikedidae]. This grouping agrees with the presence/absence of marked sexual dimorphism involving dwarf males and the paired/non-paired configuration of the gonoducts (genital sacs). Furthermore, the data supports the sister group relationship of Echiuridae and Urechidae. These two families share the character of having anal chaetae rings around the posterior trunk as a synapomorphy. The analyses also suggest that deposit feeding is a basal feeding mode in echiurans and that filter feeding originated once in the common ancestor of Urechidae. Overall, our results contradict the currently accepted order-level classification, especially in that Echiuroinea is polyphyletic, and provide novel insights into the evolution of echiuran worms. -
Appendix 1. Bodega Marine Lab Student Reports on Polychaete Biology
Appendix 1. Bodega Marine Lab student reports on polychaete biology. Species names in reports were assigned to currently accepted names. Thus, Ackerman (1976) reported Eupolymnia crescentis, which was recorded as Eupolymnia heterobranchia in spreadsheets of current species (spreadsheets 2-5). Ackerman, Peter. 1976. The influence of substrate upon the importance of tentacular regeneration in the terebellid polychaete EUPOLYMNIA CRESCENTIS with reference to another terebellid polychaete NEOAMPHITRITE ROBUSTA in regard to its respiratory response. Student Report, Bodega Marine Lab, Library. IDS 100 ∗ Eupolymnia heterobranchia (Johnson, 1901) reported as Eupolymnia crescentis Chamberlin, 1919 changed per Lights 2007. Alex, Dan. 1972. A settling survey of Mason's Marina. Student Report, Bodega Marine Lab, Library. Zoology 157 Alexander, David. 1976. Effects of temperature and other factors on the distribution of LUMBRINERIS ZONATA in the substratum (Annelida: polychaeta). Student Report, Bodega Marine Lab, Library. IDS 100 Amrein, Yost. 1949. The holdfast fauna of MACROSYSTIS INTEGRIFOLIA. Student Report, Bodega Marine Lab, Library. Zoology 112 ∗ Platynereis bicanaliculata (Baird, 1863) reported as Platynereis agassizi Okuda & Yamada, 1954. Changed per Lights 1954 (2nd edition). ∗ Naineris dendritica (Kinberg, 1867) reported as Nanereis laevigata (Grube, 1855) (should be: Naineris laevigata). N. laevigata not in Hartman 1969 or Lights 2007. N. dendritica taken as synonymous with N. laevigata. ∗ Hydroides uncinatus Fauvel, 1927 correct per I.T.I.S. although Hartman 1969 reports Hydroides changing to Eupomatus. Lights 2007 has changed Eupomatus to Hydroides. ∗ Dorvillea moniloceras (Moore, 1909) reported as Stauronereis moniloceras (Moore, 1909). (Stauronereis to Dorvillea per Hartman 1968). ∗ Amrein reported Stylarioides flabellata, which was not recognized by Hartman 1969, Lights 2007 or the Integrated Taxonomic Information System (I.T.I.S.). -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
Intertidal Organisms of Point Reyes National Seashore
Intertidal Organisms of Point Reyes National Seashore PORIFERA: sea sponges. CRUSTACEANS: barnacles, shrimp, crabs, and allies. CNIDERIANS: sea anemones and allies. MOLLUSKS : abalones, limpets, snails, BRYOZOANS: moss animals. clams, nudibranchs, chitons, and octopi. ECHINODERMS: sea stars, sea cucumbers, MARINE WORMS: flatworms, ribbon brittle stars, sea urchins. worms, peanut worms, segmented worms. UROCHORDATES: tunicates. Genus/Species Common Name Porifera Prosuberites spp. Cork sponge Leucosolenia eleanor Calcareous sponge Leucilla nuttingi Little white sponge Aplysilla glacialis Karatose sponge Lissodendoryx spp. Skunk sponge Ophlitaspongia pennata Red star sponge Haliclona spp. Purple haliclona Leuconia heathi Sharp-spined leuconia Cliona celata Yellow-boring sponge Plocarnia karykina Red encrusting sponge Hymeniacidon spp. Yellow nipple sponge Polymastia pachymastia Polymastia Cniderians Tubularia marina Tubularia hydroid Garveia annulata Orange-colored hydroid Ovelia spp. Obelia Sertularia spp. Sertularia Abientinaria greenii Green's bushy hydroid Aglaophenia struthionides Giant ostrich-plume hydroid Aglaophenia latirostris Dainty ostrich-plume hydroid Plumularia spp. Plumularia Pleurobrachia bachei Cat's eye Polyorchis spp. Bell-shaped jellyfish Chrysaora melanaster Striped jellyfish Velella velella By-the-wind-sailor Aurelia auria Moon jelly Epiactus prolifera Proliferating anemone Anthopleura xanthogrammica Giant green anemone Anthopleura artemissia Aggregated anemone Anthopleura elegantissima Burrowing anemone Tealia lofotensis -
A Checklist of the Fishes of the Monterey Bay Area Including Elkhorn Slough, the San Lorenzo, Pajaro and Salinas Rivers
f3/oC-4'( Contributions from the Moss Landing Marine Laboratories No. 26 Technical Publication 72-2 CASUC-MLML-TP-72-02 A CHECKLIST OF THE FISHES OF THE MONTEREY BAY AREA INCLUDING ELKHORN SLOUGH, THE SAN LORENZO, PAJARO AND SALINAS RIVERS by Gary E. Kukowski Sea Grant Research Assistant June 1972 LIBRARY Moss L8ndillg ,\:Jrine Laboratories r. O. Box 223 Moss Landing, Calif. 95039 This study was supported by National Sea Grant Program National Oceanic and Atmospheric Administration United States Department of Commerce - Grant No. 2-35137 to Moss Landing Marine Laboratories of the California State University at Fresno, Hayward, Sacramento, San Francisco, and San Jose Dr. Robert E. Arnal, Coordinator , ·./ "':., - 'I." ~:. 1"-"'00 ~~ ~~ IAbm>~toriesi Technical Publication 72-2: A GI-lliGKL.TST OF THE FISHES OF TtlE MONTEREY my Jl.REA INCLUDING mmORH SLOUGH, THE SAN LCRENZO, PAY-ARO AND SALINAS RIVERS .. 1&let~: Page 14 - A1estria§.·~iligtro1ophua - Stone cockscomb - r-m Page 17 - J:,iparis'W10pus." Ribbon' snailt'ish - HE , ,~ ~Ei 31 - AlectrlQ~iu.e,ctro1OphUfi- 87-B9 . .', . ': ". .' Page 31 - Ceb1diehtlrrs rlolaCewi - 89 , Page 35 - Liparis t!01:f-.e - 89 .Qhange: Page 11 - FmWulns parvipin¢.rl, add: Probable misidentification Page 20 - .BathopWuBt.lemin&, change to: .Mhgghilu§. llemipg+ Page 54 - Ji\mdJ11ui~~ add: Probable. misidentifioation Page 60 - Item. number 67, authOr should be .Hubbs, Clark TABLE OF CONTENTS INTRODUCTION 1 AREA OF COVERAGE 1 METHODS OF LITERATURE SEARCH 2 EXPLANATION OF CHECKLIST 2 ACKNOWLEDGEMENTS 4 TABLE 1 -
Symbiotic Polychaetes: Review of Known Species
Martin, D. & Britayev, T.A., 1998. Oceanogr. Mar. Biol. Ann. Rev. 36: 217-340. Symbiotic Polychaetes: Review of known species D. MARTIN (1) & T.A. BRITAYEV (2) (1) Centre d'Estudis Avançats de Blanes (CSIC), Camí de Santa Bàrbara s/n, 17300-Blanes (Girona), Spain. E-mail: [email protected] (2) A.N. Severtzov Institute of Ecology and Evolution (RAS), Laboratory of Marine Invertebrates Ecology and Morphology, Leninsky Pr. 33, 129071 Moscow, Russia. E-mail: [email protected] ABSTRACT Although there have been numerous isolated studies and reports of symbiotic relationships of polychaetes and other marine animals, the only previous attempt to provide an overview of these phenomena among the polychaetes comes from the 1950s, with no more than 70 species of symbionts being very briefly treated. Based on the available literature and on our own field observations, we compiled a list of the mentions of symbiotic polychaetes known to date. Thus, the present review includes 292 species of commensal polychaetes from 28 families involved in 713 relationships and 81 species of parasitic polychaetes from 13 families involved in 253 relationships. When possible, the main characteristic features of symbiotic polychaetes and their relationships are discussed. Among them, we include systematic account, distribution within host groups, host specificity, intra-host distribution, location on the host, infestation prevalence and intensity, and morphological, behavioural and/or physiological and reproductive adaptations. When appropriate, the possible -
Guide to the Coastal Marine Fishes of California
STATE OF CALIFORNIA THE RESOURCES AGENCY DEPARTMENT OF FISH AND GAME FISH BULLETIN 157 GUIDE TO THE COASTAL MARINE FISHES OF CALIFORNIA by DANIEL J. MILLER and ROBERT N. LEA Marine Resources Region 1972 ABSTRACT This is a comprehensive identification guide encompassing all shallow marine fishes within California waters. Geographic range limits, maximum size, depth range, a brief color description, and some meristic counts including, if available: fin ray counts, lateral line pores, lateral line scales, gill rakers, and vertebrae are given. Body proportions and shapes are used in the keys and a state- ment concerning the rarity or commonness in California is given for each species. In all, 554 species are described. Three of these have not been re- corded or confirmed as occurring in California waters but are included since they are apt to appear. The remainder have been recorded as occurring in an area between the Mexican and Oregon borders and offshore to at least 50 miles. Five of California species as yet have not been named or described, and ichthyologists studying these new forms have given information on identification to enable inclusion here. A dichotomous key to 144 families includes an outline figure of a repre- sentative for all but two families. Keys are presented for all larger families, and diagnostic features are pointed out on most of the figures. Illustrations are presented for all but eight species. Of the 554 species, 439 are found primarily in depths less than 400 ft., 48 are meso- or bathypelagic species, and 67 are deepwater bottom dwelling forms rarely taken in less than 400 ft. -
Determination of the Biologically Relevant Sampling Depth for Terrestrial and Aquatic Ecological Risk Assessments
EPA/600/R-15/176 ERASC-015F October 2015 DETERMINATION OF THE BIOLOGICALLY RELEVANT SAMPLING DEPTH FOR TERRESTRIAL AND AQUATIC ECOLOGICAL RISK ASSESSMENTS Ecological Risk Assessment Support Center National Center for Environmental Assessment Office of Research and Development U.S. Environmental Protection Agency Cincinnati, OH NOTICE This document has been subjected to the Agency’s peer and administrative review and has been approved for publication as an EPA document. Mention of trade names or commercial products does not constitute endorsement or recommendation for use. Cover art on left-hand side is an adaptation of illustrations in two Soil Quality Information Sheets published by the USDA, Natural Resources Conservation Service in May 2001: 1) Rangeland Sheet 6, Rangeland Soil Quality—Organic Matter, and 2) Rangeland Sheet 8, Rangeland Soil Quality—Soil Biota. Cover art on right-hand side is an adaptation of an illustration from Life in the Chesapeake Bay, by Alice Jane Lippson and Robert L. Lippson, published by Johns Hopkins University Press, 2715 North Charles Street, Baltimore, MD 21218. Preferred Citation: U.S. EPA (U.S. Environmental Protection Agency). 2015. Determination of the Biologically Relevant Sampling Depth for Terrestrial and Aquatic Ecological Risk Assessments. National Center for Environmental Assessment, Ecological Risk Assessment Support Center, Cincinnati, OH. EPA/600/R-15/176. ii TABLE OF CONTENTS LIST OF TABLES ........................................................................................................................ -
Function of the Anal Sacs and Mid-Gut in Mitochondrial Sulphide
This article was downloaded by: [Qingdao Institute of Biomass Energy and Bioprocess Technology] On: 28 November 2012, At: 01:39 Publisher: Taylor & Francis Informa Ltd Registered in England and Wales Registered Number: 1072954 Registered office: Mortimer House, 37-41 Mortimer Street, London W1T 3JH, UK Marine Biology Research Publication details, including instructions for authors and subscription information: http://www.tandfonline.com/loi/smar20 Function of the anal sacs and mid-gut in mitochondrial sulphide metabolism in the echiuran worm Urechis unicinctus Yu-Bin Ma a b , Zhi-Feng Zhang a , Ming-Yu Shao a , Kyoung-Ho Kang c , Li-Tao Zhang a , Xiao-Li Shi a & Ying-Ping Dong a a Key Laboratory of Marine Genetics and Breeding of Ministry of Education, Ocean University of China, Qingdao, China b Shandong Provincial Key Laboratory of Energy Genetics, Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China c Department of Aquaculture, Chonnam National University, Yeosu, South Korea Version of record first published: 26 Sep 2012. To cite this article: Yu-Bin Ma, Zhi-Feng Zhang, Ming-Yu Shao, Kyoung-Ho Kang, Li-Tao Zhang, Xiao-Li Shi & Ying-Ping Dong (2012): Function of the anal sacs and mid-gut in mitochondrial sulphide metabolism in the echiuran worm Urechis unicinctus , Marine Biology Research, 8:10, 1026-1031 To link to this article: http://dx.doi.org/10.1080/17451000.2012.707320 PLEASE SCROLL DOWN FOR ARTICLE Full terms and conditions of use: http://www.tandfonline.com/page/terms-and-conditions This article may be used for research, teaching, and private study purposes. -
Fishes-Of-The-Salish-Sea-Pp18.Pdf
NOAA Professional Paper NMFS 18 Fishes of the Salish Sea: a compilation and distributional analysis Theodore W. Pietsch James W. Orr September 2015 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce Papers NMFS National Oceanic and Atmospheric Administration Kathryn D. Sullivan Scientifi c Editor Administrator Richard Langton National Marine Fisheries Service National Marine Northeast Fisheries Science Center Fisheries Service Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Offi ce of Science and Technology Fisheries Research and Monitoring Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientifi c Publications Offi ce 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service - The NOAA Professional Paper NMFS (ISSN 1931-4590) series is published by the Scientifi c Publications Offi ce, National Marine Fisheries Service, The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original NOAA, 7600 Sand Point Way NE, research reports, taxonomic keys, species synopses, fl ora and fauna studies, and data- Seattle, WA 98115. intensive reports on investigations in fi shery science, engineering, and economics. The Secretary of Commerce has Copies of the NOAA Professional Paper NMFS series are available free in limited determined that the publication of numbers to government agencies, both federal and state. They are also available in this series is necessary in the transac- exchange for other scientifi c and technical publications in the marine sciences.