Subspecies Status and Methods Explain Strength of Response to Local Versus Foreign Song by 2 Oscine Birds in Meta‐Analysis 3 4 5 Timothy H
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History and Philosophy of Systematic Biology
History and Philosophy of Systematic Biology Bock, W. J. (1973) Philosophical foundations of classical evolutionary classification Systematic Zoology 22: 375-392 Part of a general symposium on "Contemporary Systematic Philosophies," there are some other interesting papers here. Brower, A. V. Z. (2000) Evolution Is Not a Necessary Assumption of Cladistics Cladistics 16: 143- 154 Dayrat, Benoit (2005) Ancestor-descendant relationships and the reconstruction of the Tree of Lif Paleobiology 31: 347-353 Donoghue, M.J. and J.W. Kadereit (1992) Walter Zimmermann and the growth of phylogenetic theory Systematic Biology 41: 74-84 Faith, D. P. and J. W. H. Trueman (2001) Towards an inclusive philosophy for phylogenetic inference Systematic Biology 50: 331-350 Gaffney, E. S. (1979) An introduction to the logic of phylogeny reconstruction, pp. 79-111 in Cracraft, J. and N. Eldredge (eds.) Phylogenetic Analysis and Paleontology Columbia University Press, New York. Gilmour, J. S. L. (1940) Taxonomy and philosophy, pp. 461-474 in J. Huxley (ed.) The New Systematics Oxford Hull, D. L. (1978) A matter of individuality Phil. of Science 45: 335-360 Hull, D. L. (1978) The principles of biological classification: the use and abuse of philosophy Hull, D. L. (1984) Cladistic theory: hypotheses that blur and grow, pp. 5-23 in T. Duncan and T. F. Stuessy (eds.) Cladistics: Perspectives on the Reconstruction of Evolutionary History Columbia University Press, New York * Hull, D. L. (1988) Science as a process: an evolutionary account of the social and conceptual development of science University of Chicago Press. An already classic work on the recent, violent history of systematics; used as data for Hull's general theories about scientific change. -
1. Adaptation and the Evolution of Physiological Characters
Bennett, A. F. 1997. Adaptation and the evolution of physiological characters, pp. 3-16. In: Handbook of Physiology, Sect. 13: Comparative Physiology. W. H. Dantzler, ed. Oxford Univ. Press, New York. 1. Adaptation and the evolution of physiological characters Department of Ecology and Evolutionary Biology, University of California, ALBERT F. BENNETT 1 Irvine, California among the biological sciences (for example, behavioral CHAPTER CONTENTS science [I241). The Many meanings of "Adaptationn In general, comparative physiologists have been Criticisms of Adaptive Interpretations much more successful in, and have devoted much more Alternatives to Adaptive Explanations energy to, pursuing the former rather than the latter Historical inheritance goal (37). Most of this Handbook is devoted to an Developmentai pattern and constraint Physical and biomechanical correlation examination of mechanism-how various physiologi- Phenotypic size correlation cal systems function in various animals. Such compara- Genetic correlations tive studies are usually interpreted within a specific Chance fixation evolutionary context, that of adaptation. That is, or- Studying the Evolution of Physiological Characters ganisms are asserted to be designed in the ways they Macroevolutionary studies Microevolutionary studies are and to function in the ways they do because of Incorporating an Evolutionary Perspective into Physiological Studies natural selection which results in evolutionary change. The principal textbooks in the field (for example, refs. 33, 52, 102, 115) make explicit reference in their titles to the importance of adaptation to comparative COMPARATIVE PHYSIOLOGISTS HAVE TWO GOALS. The physiology, as did the last comparative section of this first is to explain mechanism, the study of how organ- Handbook (32). Adaptive evolutionary explanations isms are built functionally, "how animals work" (113). -
The Impact of Environmental Noise on Song Amplitude in a Territorial Bird
Journal of Animal Blackwell Publishing, Ltd. Ecology 2004 The impact of environmental noise on song amplitude 73, 434–440 in a territorial bird HENRIK BRUMM Institute of Biology, Behavioural Biology, Free University, Berlin Summary 1. The impact of environmental background noise on the performance of territorial songs was examined in free-ranging nightingales (Luscinia megarhynchos Brehm). An analysis of sound pressure levels revealed that males at noisier locations sang with higher sound levels than birds in territories less affected by background sounds. 2. This is the first evidence of a noise-dependent vocal amplitude regulation in the natural environment of an animal. 3. The results yielded demonstrate that the birds tried to mitigate the impairments on their communication caused by masking noise. This behaviour may help to maintain a given transmission distance of songs, which are used in territory defence and mate attraction. At the same time, birds forced to sing with higher amplitudes have to bear the increased costs of singing. 4. This suggests that in songbirds the level of environmental noise in a territory will contribute to its quality and thus considerably affect the behavioural ecology of singing males. Key-words: acoustical masking, birdsong, Lombard effect, Luscinia megarhynchos, vocal amplitude. Journal of Animal Ecology (2004) 73, 434–440 is the noise produced by torrents and waterfalls. An Introduction evolutionary response of frogs and birds living in such Acoustic communication is constrained considerably habitats is to evade masking by producing high-pitched by environmental factors, such as habitat-dependent vocalizations in narrow frequency bands (Dubois & sound transmission properties related to microclimate Martens 1984). -
MADAGASCAR: the Wonders of the “8Th Continent” a Tropical Birding Custom Trip
MADAGASCAR: The Wonders of the “8th Continent” A Tropical Birding Custom Trip October 20—November 6, 2016 Guide: Ken Behrens All photos taken during this trip by Ken Behrens Annotated bird list by Jerry Connolly TOUR SUMMARY Madagascar has long been a core destination for Tropical Birding, and with the opening of a satellite office in the country several years ago, we further solidified our expertise in the “Eighth Continent.” This custom trip followed an itinerary similar to that of our main set-departure tour. Although this trip had a definite bird bias, it was really a general natural history tour. We took our time in observing and photographing whatever we could find, from lemurs to chameleons to bizarre invertebrates. Madagascar is rich in wonderful birds, and we enjoyed these to the fullest. But its mammals, reptiles, amphibians, and insects are just as wondrous and accessible, and a trip that ignored them would be sorely missing out. We also took time to enjoy the cultural riches of Madagascar, the small villages full of smiling children, the zebu carts which seem straight out of the Middle Ages, and the ingeniously engineered rice paddies. If you want to come to Madagascar and see it all… come with Tropical Birding! Madagascar is well known to pose some logistical challenges, especially in the form of the national airline Air Madagascar, but we enjoyed perfectly smooth sailing on this tour. We stayed in the most comfortable hotels available at each stop on the itinerary, including some that have just recently opened, and savored some remarkably good food, which many people rank as the best Madagascar Custom Tour October 20-November 6, 2016 they have ever had on any birding tour. -
Conservation Biology and Global Change
honeyeater (Melipotes carolae), a species that had never been described before (Figure 56.1). In 2005, a team of American, Indonesian, and Australian biologists experienced many mo- 56 ments like this as they spent a month cataloging the living riches hidden in a remote mountain range in Indonesia. In addition to the honeyeater, they discovered dozens of new frog, butterfly, and plant species, including five new palms. Conservation To date, scientists have described and formally named about 1.8 million species of organisms. Some biologists think Biology and that about 10 million more species currently exist; others es- timate the number to be as high as 100 million. Some of the Global Change greatest concentrations of species are found in the tropics. Unfortunately, tropical forests are being cleared at an alarm- ing rate to make room for and support a burgeoning human population. Rates of deforestation in Indonesia are among the highest in the world (Figure 56.2). What will become of the smoky honeyeater and other newly discovered species in Indonesia if such deforestation continues unchecked? Throughout the biosphere, human activities are altering trophic structures, energy flow, chemical cycling, and natural disturbance—ecosystem processes on which we and all other species depend (see Chapter 55). We have physically altered nearly half of Earth’s land surface, and we use over half of all accessible surface fresh water. In the oceans, stocks of most major fisheries are shrinking because of overharvesting. By some estimates, we may be pushing more species toward ex- tinction than the large asteroid that triggered the mass ex- tinctions at the close of the Cretaceous period 65.5 million years ago (see Figure 25.16). -
Speciation in Heliconius Butterflies: Minimal Contact Followed 2 by Millions of Generations of Hybridisation 3 Simon H
bioRxiv preprint doi: https://doi.org/10.1101/015800; this version posted March 2, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 1 Speciation in Heliconius Butterflies: Minimal Contact Followed 2 by Millions of Generations of Hybridisation 3 Simon H. Martin*1, Anders Eriksson*1,2, Krzysztof M. Kozak1, Andrea Manica1 and 4 Chris D. Jiggins1 5 1 Department of Zoology, University of Cambridge, Downing Street, Cambridge, CB2 6 3EJ, United Kingdom 7 2 Integrative Systems Biology Laboratory, King Abdullah University of Science 8 and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia 9 * These authors contributed equally 10 Corresponding Author: S.H. Martin, [email protected] 11 Running Head: Change in the rate of gene flow during butterfly speciation bioRxiv preprint doi: https://doi.org/10.1101/015800; this version posted March 2, 2015. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 2 12 Abstract 13 Documenting the full extent of gene flow during speciation poses a challenge, as 14 species ranges change over time and current rates of hybridisation might not reflect 15 historical trends. Theoretical work has emphasized the potential for speciation in the 16 face of ongoing hybridisation, and the genetic mechanisms that might facilitate this 17 process. -
A Guide to the Birds of Barrow Island
A Guide to the Birds of Barrow Island Operated by Chevron Australia This document has been printed by a Sustainable Green Printer on stock that is certified carbon in joint venture with neutral and is Forestry Stewardship Council (FSC) mix certified, ensuring fibres are sourced from certified and well managed forests. The stock 55% recycled (30% pre consumer, 25% post- Cert no. L2/0011.2010 consumer) and has an ISO 14001 Environmental Certification. ISBN 978-0-9871120-1-9 Gorgon Project Osaka Gas | Tokyo Gas | Chubu Electric Power Chevron’s Policy on Working in Sensitive Areas Protecting the safety and health of people and the environment is a Chevron core value. About the Authors Therefore, we: • Strive to design our facilities and conduct our operations to avoid adverse impacts to human health and to operate in an environmentally sound, reliable and Dr Dorian Moro efficient manner. • Conduct our operations responsibly in all areas, including environments with sensitive Dorian Moro works for Chevron Australia as the Terrestrial Ecologist biological characteristics. in the Australasia Strategic Business Unit. His Bachelor of Science Chevron strives to avoid or reduce significant risks and impacts our projects and (Hons) studies at La Trobe University (Victoria), focused on small operations may pose to sensitive species, habitats and ecosystems. This means that we: mammal communities in coastal areas of Victoria. His PhD (University • Integrate biodiversity into our business decision-making and management through our of Western Australia) -
Bird Watching in Cyprus a Brief Guide for Visitors To
BIRD WATCHING IN CYPRUS A BRIEF GUIDE FOR VISITORS TO THE ISLAND 1 Information on Cyprus in general The position of Cyprus in the eastern Mediterranean with Turkey to the north, Syria to the east and Egypt to the south, places it on one of the major migration routes in the Mediterranean and makes it a stop off point for many species which pass each year from Europe/Asia to Africa via the Nile Delta. The birds that occur regularly on passage form a large percentage of the ‘Cyprus list’ that currently totals nearly 380 species. Of these only around 50 are resident and around 40 are migrant species that regularly or occasionally breed. The number of birds passing over during the spring and autumn migration periods are impressive, as literally millions of birds pour through Cyprus. Spring migration gets underway in earnest around the middle of March, usually depending on how settled the weather is, and continues into May. A few early arrivals can even be noted in February, especially the swallows, martins and swifts, some wheatears and the Great Spotted Cuckoo Clamator glandarius. Slender-billed Gulls Larus genei and herons can be seen in flocks along the coastline. Each week seems to provide a different species to watch for. The end of March sees Roller Coracias garrulous, Masked Shrike Lanius nubicus, Cretzschmar’s Bunting Emberiza caesia, Black-headed Wagtails Motacilla flava feldegg and Red-rumped Swallows Cecropsis daurica, while on the wetlands Marsh Sandpipers Tringa stagnatilis, Collared Pratincole Glareola pratincola, Spur-winged Vanellus spinosus and Greater Sand Plover Charadrius leschenaultii can be seen. -
Nest, Egg, Incubation Behaviour and Parental Care in the Huon Bowerbird Amblyornis Germana
Australian Field Ornithology 2019, 36, 18–23 http://dx.doi.org/10.20938/afo36018023 Nest, egg, incubation behaviour and parental care in the Huon Bowerbird Amblyornis germana Richard H. Donaghey1, 2*, Donna J. Belder3, Tony Baylis4 and Sue Gould5 1Environmental Futures Research Institute, Griffith University, Nathan 4111 QLD, Australia 280 Sawards Road, Myalla TAS 7325, Australia 3Fenner School of Environment and Society, The Australian National University, Canberra ACT 2601, Australia 4628 Utopia Road, Brooweena QLD 4621, Australia 5269 Burraneer Road, Coomba Park NSW 2428, Australia *Corresponding author. Email: [email protected] Abstract. The Huon Bowerbird Amblyornis germana, recently elevated to species status, is endemic to montane forests on the Huon Peninsula, Papua New Guinea. The polygynous males in the Yopno Urawa Som Conservation Area build distinctive maypole bowers. We document for the first time the nest, egg, incubation behaviour, and parental care of this species. Three of the five nests found were built in tree-fern crowns. Nest structure and the single-egg clutch were similar to those of MacGregor’s Bowerbird A. macgregoriae. Only the female Huon Bowerbird incubated. Mean length of incubation sessions was 30.9 minutes and the number of sessions daily was 18. Diurnal incubation constancy over a 12-hour day was 74%, compared with a mean of ~70% in six other members of the bowerbird family. The downy nestling resembled that of MacGregor’s Bowerbird. Vocalisations of a female Huon Bowerbird at a nest with a nestling -
MADAGASCAR: the Wonders of the “8Th Continent” a Tropical Birding Set Departure
MADAGASCAR: The Wonders of the “8th Continent” A Tropical Birding Set Departure November 3—28, 2013 Guide: Ken Behrens All photos taken during this trip. All photos by Ken Behrens unless noted otherwise. TOUR SUMMARY Madagascar has long been a core destination for Tropical Birding, and with last year’s opening of a satellite office in the country, we have further solidified our expertise in the “Eighth Continent.” This was another highly successful set-departure tour to this special island. It included both the Northwestern Endemics Pre-Trip at the start and the Helmet Vanga extension to the Masoala Peninsula at the end. Although Madagascar poses some logistical challenges, especially in the form of the national airline Air Madagascar, we had no problems on this tour, not even a single delayed flight! The birding was great, with 196 species recorded, including almost all of the island’s endemic birds. As usual, the highlight was seeing all five of the incredible ground-rollers, from the roadrunner-like Long-tailed of the spiny forest to the wonderful rainforest-dwelling Scaly. There was a strong cast of vangas, including Helmet, Bernier’s, and Sickle-billed. In fact, we saw every member of the family save the mysterious Red-tailed Newtonia which is only regularly seen in the far south. As normal, the couas were also a favorite. From the shy and beautiful Red-breasted of Madagascar Set Departure Tour Nov. 3-28, 2013 the eastern rainforest to the huge Giant Coua of the dry western forest, we were looking for and at couas virtually every day! The bizarre mesites form a Malagasy endemic family, and we had superb extended views of all three members of the family. -
Variation in Birdsong of Red Vented Bulbul ( Pycnonotus Cafer) Inhabiting Two Different Locations
Journal of Experimental Sciences 2012, 3(8): 21-25 ISSN: 2218-1768 Available Online: http://jexpsciences.com/ Variation in birdsong of red vented bulbul ( Pycnonotus cafer) Inhabiting two different locations Manjunath and Bhaskar Joshi Department of Zoology, Gulbarga University, Gulbarga, Karnataka, India Abstract This species emits a high variety of acoustic signals in their communication. The signals may be long or short and simple; these signals can be classified into songs and calls. Individuals sang throughout the year. The songs of red-vented bulbul (pycnonotus cafer ) in two regions: Gulbarga and Ainoli were studied during the period from March 2008 to June 2009. The results show that variations exist in this bird species. The songs of birds from two regions shows differences in the tone characteristics, number of syllables, duration, spectral features and frequency range of the main sentence and so on. Keywords: Pycnonotus cafer, Gulbarga, Ainoli. INTRODUCTION from which are unlikely to meet each other. Significant The vocalizations of animals are unique in that they lend macrogeographic differences between populations have been themselves readily to accurate and objective analysis, made possible demonstrated in several species, such as Lincoln’s Sparrows through the recently improved technical aids in sound recording and (Melospiza lincolnii ) (Cicero and Benowitz-Fredericks 2000), Song analysis. Birds use an array of vocal signals in their communication. sparrows ( M. melodia ) (Peters et al., 2000), Willow Flycatchers These signals may be long and complex or short and simple, and (Empidonax trailli ) (Sedgwick 2001), Golden Bowebirds ( Prionodura they may occur in particular contexts (Catchpole and Slater 1995). newtonia ) (Westcoott and Kroon 2002). -
Can Secondary Contact Following Range Expansion Be Distinguished from Barriers to Gene flow?
Can secondary contact following range expansion be distinguished from barriers to gene flow? Johanna Bertl1,2, Harald Ringbauer3,4 and Michael G.B. Blum5 1 Department of Molecular Medicine, Aarhus University, Aarhus, Denmark 2 Vienna Graduate School of Population Genetics, Vetmeduni Vienna, Vienna, Austria 3 Department of Human Genetics, University of Chicago, Chicago, IL, USA 4 Institute of Science and Technology Austria, Klosterneuburg, Austria 5 Laboratoire TIMC-IMAG, UMR 5525, Université Grenoble Alpes, CNRS, Grenoble, France ABSTRACT Secondary contact is the reestablishment of gene flow between sister populations that have diverged. For instance, at the end of the Quaternary glaciations in Europe, secondary contact occurred during the northward expansion of the populations which had found refugia in the southern peninsulas. With the advent of multi-locus markers, secondary contact can be investigated using various molecular signatures including gradients of allele frequency, admixture clines, and local increase of genetic differentiation. We use coalescent simulations to investigate if molecular data provide enough information to distinguish between secondary contact following range expansion and an alternative evolutionary scenario consisting of a barrier to gene flow in an isolation-by-distance model. We find that an excess of linkage disequilibrium and of genetic diversity at the suture zone is a unique signature of secondary contact. We also find that the directionality index c, which was proposed to study range expansion, is informative to distinguish between the two hypotheses. However, although evidence for secondary contact is usually conveyed by statistics related to admixture coefficients, we find that they can be confounded by isolation-by-distance. We recommend to account for the spatial repartition of fl Submitted 29 November 2016 individuals when investigating secondary contact in order to better re ect the Accepted 1 July 2018 complex spatio-temporal evolution of populations and species.