AR TICLE the Identity of Cintractia Disciformis
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Phylogeny and Morphology of Anthracoidea Pamiroalaica Sp
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/284869485 Phylogeny and morphology of Anthracoidea pamiroalaica sp. nov. infecting the endemic sedge Carex koshewnikowii in the Pamir Alai Mts (Tajikistan) Article in Mycological Progress · November 2015 DOI: 10.1007/s11557-015-1140-1 CITATIONS READS 4 168 4 authors: Marcin Piątek Matthias Lutz W. Szafer Institute of Botany, Polish Academy of Sciences University of Tuebingen 153 PUBLICATIONS 1,470 CITATIONS 218 PUBLICATIONS 1,281 CITATIONS SEE PROFILE SEE PROFILE Marcin Nobis Arkadiusz Nowak Jagiellonian University Opole University 215 PUBLICATIONS 2,373 CITATIONS 235 PUBLICATIONS 1,906 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Vegetation classification of Middle Asia View project Interactions of invasive plants with soil microorganisms View project All content following this page was uploaded by Marcin Piątek on 28 November 2015. The user has requested enhancement of the downloaded file. Mycol Progress (2015) 14:120 DOI 10.1007/s11557-015-1140-1 ORIGINAL ARTICLE Phylogeny and morphology of Anthracoidea pamiroalaica sp. nov. infecting the endemic sedge Carex koshewnikowii in the Pamir Alai Mts (Tajikistan) Marcin Piątek1 & Matthias Lutz2 & Marcin Nobis3 & Arkadiusz Nowak4 Received: 24 July 2015 /Revised: 16 October 2015 /Accepted: 2 November 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract AnovelAnthracoidea species, A. pamiroalaica on Introduction the endemic sedge Carex koshewnikowii, is described and illustrated from the Pamir Alai Mts in Tajikistan (Central The genus Anthracoidea Bref., typified by Anthracoidea Asia). -
Axpcoords & Parallel Axparafit: Statistical Co-Phylogenetic Analyses
BMC Bioinformatics BioMed Central Software Open Access AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa Alexandros Stamatakis*1,2, Alexander F Auch3, Jan Meier-Kolthoff3 and Markus Göker4 Address: 1École Polytechnique Fédérale de Lausanne, School of Computer & Communication Sciences, Laboratory for Computational Biology and Bioinformatics STATION 14, CH-1015 Lausanne, Switzerland, 2Swiss Institute of Bioinformatics, 3Center for Bioinformatics (ZBIT), Sand 14, Tübingen, University of Tübingen, Germany and 4Organismic Botany/Mycology, Auf der Morgenstelle 1, Tübingen, University of Tübingen, Germany Email: Alexandros Stamatakis* - [email protected]; Alexander F Auch - [email protected]; Jan Meier- Kolthoff - [email protected]; Markus Göker - [email protected] * Corresponding author Published: 22 October 2007 Received: 26 June 2007 Accepted: 22 October 2007 BMC Bioinformatics 2007, 8:405 doi:10.1186/1471-2105-8-405 This article is available from: http://www.biomedcentral.com/1471-2105/8/405 © 2007 Stamatakis et al.; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Current tools for Co-phylogenetic analyses are not able to cope with the continuous accumulation of phylogenetic data. The sophisticated statistical test for host-parasite co-phylogenetic analyses implemented in Parafit does not allow it to handle large datasets in reasonable times. The Parafit and DistPCoA programs are the by far most compute-intensive components of the Parafit analysis pipeline. -
Competing Sexual and Asexual Generic Names in <I
doi:10.5598/imafungus.2018.09.01.06 IMA FUNGUS · 9(1): 75–89 (2018) Competing sexual and asexual generic names in Pucciniomycotina and ARTICLE Ustilaginomycotina (Basidiomycota) and recommendations for use M. Catherine Aime1, Lisa A. Castlebury2, Mehrdad Abbasi1, Dominik Begerow3, Reinhard Berndt4, Roland Kirschner5, Ludmila Marvanová6, Yoshitaka Ono7, Mahajabeen Padamsee8, Markus Scholler9, Marco Thines10, and Amy Y. Rossman11 1Purdue University, Department of Botany and Plant Pathology, West Lafayette, IN 47901, USA; corresponding author e-mail: maime@purdue. edu 2Mycology & Nematology Genetic Diversity and Biology Laboratory, USDA-ARS, Beltsville, MD 20705, USA 3Ruhr-Universität Bochum, Geobotanik, ND 03/174, D-44801 Bochum, Germany 4ETH Zürich, Plant Ecological Genetics, Universitätstrasse 16, 8092 Zürich, Switzerland 5Department of Biomedical Sciences and Engineering, National Central University, 320 Taoyuan City, Taiwan 6Czech Collection of Microoorganisms, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic 7Faculty of Education, Ibaraki University, Mito, Ibaraki 310-8512, Japan 8Systematics Team, Manaaki Whenua Landcare Research, Auckland 1072, New Zealand 9Staatliches Museum f. Naturkunde Karlsruhe, Erbprinzenstr. 13, D-76133 Karlsruhe, Germany 10Senckenberg Gesellschaft für Naturforschung, Frankfurt (Main), Germany 11Department of Botany & Plant Pathology, Oregon State University, Corvallis, OR 97333, USA Abstract: With the change to one scientific name for pleomorphic fungi, generic names typified by sexual and Key words: asexual morphs have been evaluated to recommend which name to use when two names represent the same genus Basidiomycetes and thus compete for use. In this paper, generic names in Pucciniomycotina and Ustilaginomycotina are evaluated pleomorphic fungi based on their type species to determine which names are synonyms. Twenty-one sets of sexually and asexually taxonomy typified names in Pucciniomycotina and eight sets in Ustilaginomycotina were determined to be congeneric and protected names compete for use. -
1. Padil Species Factsheet Scientific Name: Common Name Image
1. PaDIL Species Factsheet Scientific Name: Cintractia axicola (Berk.) Cornu Basidiomycota, Ustilaginomycetes, Ustilaginales, Cintractiaceae Common Name Fimbristylis Smut Live link: http://www.padil.gov.au/aus-smuts/Pest/Main/139916 Image Library Smut Fungi of Australia Live link: http://www.padil.gov.au/aus-smuts/ Partners for Smut Fungi of Australia image library Queensland Government https://www.daf.qld.gov.au/ 2. Species Information 2.1. Details Specimen Contact: Roger Shivas - [email protected] Author: Roger Shivas Citation: Roger Shivas (2010) Fimbristylis Smut(Cintractia axicola )Updated on 11/16/2010 Available online: PaDIL - http://www.padil.gov.au Image Use: Free for use under the Creative Commons Attribution-NonCommercial 4.0 International (CC BY- NC 4.0) 2.2. URL Live link: http://www.padil.gov.au/aus-smuts/Pest/Main/139916 2.3. Facets Columella: absent Distribution: NSW, NT, QLD, WA Peridium: present Sorus position: inflorescence Sorus shape: globose to short cylindrical Spore balls: absent Spore mass texture: agglutinated Spore shape: globose or subglobose, ovoid to ellipsoidal, polyhedral or subpolyhedral Spore surface ornamentation: smooth Status: Native Australian Species Sterile cells: absent Host Family: Cyperaceae 2.4. Other Names Anthracoidea suedae (Sawada ex S. Ito) Vánky Cintractia fimbristylis-kagiensis Sawada ex S. Ito Cintractia fimbristylis-kagiensis var. fukienensis Y. Ling & T.L. Chen Cintractia mundkurii S. Chowdhury Cintractia peribebuyensis (Speg.) Sawada Cintractia peribebuyensis (Speg.) Speg. -
Cintractia Majewskii, a New Smut Fungus (Ustilaginomycetes) on Fimbristylis (Cyperaceae) from Africa
Polish Botanical Journal 50(1): 1–6, 2005 CINTRACTIA MAJEWSKII, A NEW SMUT FUNGUS (USTILAGINOMYCETES) ON FIMBRISTYLIS (CYPERACEAE) FROM AFRICA MARCIN PIĄTEK & KÁLMÁN VÁNKY Abstract. A new species of smut fungi, Cintractia majewskii M. Piątek & Vánky sp. nov. on Fimbristylis sp., collected in the Democratic Republic of the Congo in Africa, is described, illustrated and compared with similar taxa. A key for the identifi cation of the eight smut fungi on Fimbristylis spp. is provided. Key words: Cintractia, new species, smut fungi, Ustilaginomycetes, Fimbristylis, taxonomy, Democratic Republic of the Congo, Africa Marcin Piątek, Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland; e-mail: [email protected] Kálmán Vánky, Herbarium Ustilaginales Vánky (HUV), Gabriel-Biel-Str. 5, D-72076 Tübingen, Germany; e-mail: [email protected] INTRODUCTION Fimbristylis Vahl is a genus of Cyperaceae with a remarkable specimen of Cintractia Cornu s.l. on about 200 species worldwide, occurring mostly in Fimbristylis sp. It was not Cintractia axicola, the subtropical and tropical regions. On Fimbristylis most common member of this genus, which forms spp. seven species of smut fungi have been hitherto sori mostly around the pedunculi, and the author recognized as good taxa: Cintractia axicola (Berk.) thought that it is Cintractia eleocharidis. This as- Cornu, C. fi mbristylis-miliaceae (Henn.) S. Ito, sumption was due mostly to the morphology of C. mitchellii Vánky, Dermatosorus fi mbristylidis the spores, which are similar in size to this latter (Thirum. & Naras.) Langdon, Moreaua fi mbristy- species, and whose surface is covered by confl uent lidis Vánky & R. -
Taxonomy, Host Spectrum and Global Distribution of Anthracoidea Siderostictae (Ustilaginomycetes)
Ann. Bot. Fennici 44: 181–185 ISSN 0003-3847 Helsinki 20 June 2007 © Finnish Zoological and Botanical Publishing Board 2007 Taxonomy, host spectrum and global distribution of Anthracoidea siderostictae (Ustilaginomycetes) Marcin Piątek Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland (e-mail: [email protected]) Received 9 Jan. 2006, revised version received 19 Sep. 2006, accepted 20 Sep. 2006 Piątek, M. 2007: Taxonomy, host spectrum and global distribution of Anthracoidea siderostictae (Ustilaginomycetes). — Ann. Bot. Fennici 44: 181–185. The first record of Anthracoidea siderostictae Kukkonen from Russia provides the background to review the taxonomy, host spectrum and world distribution of this rare smut fungus. The Russian collection is fully described and illustrated with drawings of the infected plant, and with LM and SEM micrographs of spores. Anthracoidea siderostictae is now known from six localities in China, Japan and Russia, where it infects representatives of Carex sect. Siderostictae. The global distribution of A. siderostictae is mapped. Key words: Anthracoidea, host range, mycogeography, smut fungi, taxonomy The smut fungus Anthracoidea siderostictae is be a very rare East Asian smut fungus. During one of the few species of Anthracoidea described the course of a study of various collections of by Ilkka Kukkonen from outside of Europe, Anthracoidea I examined a specimen collected during his extensive studies on the genus (Kuk- in Primorski Krai in Russia, infecting Carex konen 1963, 1964a, 1964b). When describing siderosticta and identified as “Cintractia subin- this species Kukkonen (1964b) designated as a clusa (Körn.) Magnus”. The specimen appeared holotype a specimen on Carex siderosticta from to represent typical Anthracoidea siderostictae Japan, and in addition enumerated three other that, accordingly, is new to Russia. -
Anthracoidea Transberingiana, a New Smut Species on Carex Pauciflora from Beringia
Phytotaxa 174 (2): 105–110 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2014 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.174.2.5 Anthracoidea transberingiana, a new smut species on Carex pauciflora from Beringia MARCIN PIĄTEK Department of Mycology, W. Szafer Institute of Botany, Polish Academy of Sciences, Lubicz 46, PL-31-512 Kraków, Poland e-mail: [email protected] Abstract The new smut fungus, Anthracoidea transberingiana attacking ovaries of Carex pauciflora, is described and illustrated from Beringia (Alaska and Kamchatka). The new species is compared with Anthracoidea caricis-pauciflorae infecting the same host plant species predominantly in northern Europe, from which it differs in having smaller spores, thinner spore walls, 2–3 weakly visible internal swellings and somewhat less prominent spore ornamentation. Key words: Anthracoideaceae, Cyperaceae, plant pathogens, smut fungi, Ustilaginales Introduction The few-flowered sedge Carex pauciflora Lightfoot (1777: 543) is a circumpolar species, widely distributed in arctic, boreal and montane ecosystems of North America, Europe and Asia where it occurs mostly on the Sphagnum bogs or different kinds of acidic peat soils (Chater 1980, Hultén & Fries 1986, Egorova 1999, Cochrane 2002). In northern Europe, the few-flowered sedge is rarely infected by the ovary smut Anthracoidea caricis-pauciflorae (Lehtola 1940: 127) Kukkonen (1963: 74). This smut species was also reported from two extra-European stations, namely British Colombia in North America (Kukkonen 1963) and Kamchatka in Asia (Karatygin & Azbukina 1989). In the European and world smut monographs, Vánky (1994, 2012) reported that A. caricis-pauciflorae occurs in northern Europe, northern North America and north-east Asia. -
Mykologie Tübingen-15.3.12
Mykologie am Lehrstuhl Spezielle Botanik und Mykologie der Universität Tübingen, 1974-2011 FRANZ OBERWINKLER Kurzfassung Wir beschreiben die mykologischen Forschungsaktivitäten am ehemaligen Lehrstuhl „Spezi- elle Botanik und Mykologie“ der Universität Tübingen von 1974 bis 2011 und ihre interna- tionalen Ausstrahlung. Leitschiene unseres gemeinsamen mykologischen Forschungskonzep- tes war die Verknüpfung von Gelände- mit Laborarbeiten sowie von Forschung mit Lehre. Dieses Konzept spiegelte sich in einem weit gefächerten Lehrangebot, das insbesondere den Pflanzen als dem Hauptsubstrat der Pilze breiten Raum gab. Lichtmikroskopische Untersu- chungen der zellulären Baupläne von Pilzen bildeten das Fundament für unsere Arbeiten: Identifikationen, Ontogeniestudien, Vergleiche von Mikromorphologien, Überprüfen von Kulturen, Präparateauswahl für Elektronenmikroskopie, etc. Bereits an diesen Beispielen wird die Methodenvernetzung erkennbar. In dem zu besprechenden Zeitraum wurden Ultrastrukturuntersuchungen und Nukleinsäurese- quenzierungen als revolutionierende Methoden für den täglichen Laborbetrieb verfügbar. Flankiert wurden diese Neuerungen durch ständig verbesserte Datenaufbereitungen und Aus- wertungsprogramme für Computer. Zusammen mit den traditionellen Anwendungen der Lichtmikroskopie und der Kultivierung von Pilzen stand somit ein effizientes Methodenspek- trum zur Verfügung, das für systematische, phylogenetische und ökologische Fragestellungen gleichermaßen eingesetzt werden konnte, insbesondere in der Antibiotikaforschung, beim -
Smut Fungi (Ustilaginomycetes and Microbotryales, Basidiomycota) in Panama
Rev. Biol. Trop., 49(2): 411-428, 2001 www.ucr.ac.cr www.ots.ac.cr www.ots.duke.edu Smut fungi (Ustilaginomycetes and Microbotryales, Basidiomycota) in Panama Meike Piepenbring Lehrstuhl Spezielle Botanik/Mykologie, Botanisches Institut, Universität Tübingen, Auf der Morgenstelle 1, 72076 Tübingen, Germany. Fax: 0049 7071 295344 E-mail: [email protected] Received 6-V-2000. Corrected 30-X-2000. Accepted 31-X-2000. Abstract: This is the first publication dedicated to the diversity of smut fungi in Panama based on field work, the study of herbarium specimens, and references taken from literature. It includes smuts parasitizing cultivated and wild plants. The latter are mostly found in rural vegetation. Among the 24 species cited here, 14 species are recorded for the first time for Panama. One of them, Sporisorium ovarium, is observed for the first time in Central America. Entyloma spilanthis is found on the host species Acmella papposa var. macrophylla (Asteraceae) for the first time. Entyloma costaricense and Entyloma ecuadorense are considered synonyms of Entyloma compositarum and Entyloma spilanthis respectively. For the new conbination Sponsorium panamensis see note at the end of this publication. Descriptions of the species are complemented by some illustrations, a checklist, and a key. Key words: Checklist, neotropics, Panama, smut fungi, Sponsorium panamensis, Tilletiales, Ustilaginales Smut fungi (Ustilaginomycetes and Micro- literature (Zundel 1939, 1953, Toler et al. 1959, botryales, Urediniomycetes; Basidiomycota; Dennis 1970, Comstock et al. 1983). Bauer et al. 1997, 2001) are parasites of plants, The check list in the present publication is especially herbs belonging to the Poaceae and far from complete, being based on only about Cyperaceae. -
Cintractiellaceae Fam. Nov. (Ustilaginomycetes)
Fungal Diversity Cintractiellaceae fam. nov. (Ustilaginomycetes) Kálmán Vánky∗ Herbarium Ustilaginales Vánky (HUV), Gabriel-Biel-Str. 5, D-72076 Tübingen, Germany; e- mail: [email protected] Vánky, K. (2003). Cintractiellaceae fam. nov. (Ustilaginomycetes). Fungal Diversity 13: 167- 173. A new family, Cintractiellaceae, is proposed to accommodate the two peculiar smut fungi in the genus Cintractiella, C. diplasiae and C. lamii. Key words: Cintractiella, Cintractiella diplasiae, Cintractiella lamii, Cyperaceae, Hypolytreae, Mapanioideae, smut fungi, taxonomy Introduction The classification of smut fungi and allied taxa has changed radically since publication of a paper by Bauer et al. (1997). Application of modern methods (ultrastructural studies and molecular analyses), has opened the way towards a better, phylogenetical classification, in which surprising relationships have become evident. The results were published, i.a., in: Begerow et al. (1997/1998), Swann et al. (1999), Piepenbring et al. (1999), Bauer et al. (1999a,b, 2001), Vánky (1999b, 2000, 2001a), Begerow et al. (2000) and summarised by Bauer et al. (1998, 2000), Vánky (1999a, 2001b, 2002a,b). The classification of the smut fungi is, however, not settled. Molecular analyses, classical, morphological investigations, studies of the parasites correlated with the systematics of their host plants, as well as new discoveries will certainly increase the number of higher taxa of smut fungi (Microbotryales and Ustilaginomycetes). At present, the ca. 1450 known "classical" smut fungi (those possessing teliospores), are classified into two classes, three subclasses, 8 orders, 26 families and 77 genera (Vánky, 2002b). To these, the new family for the genus Cintractiella Boedijn should also be added. ∗Corresponding author: K. Vánky, e-mail: [email protected] 167 The genus Cintractiella Leaves of a Hypolytrum sp. -
Phylogeny and Morphology of Anthracoidea Pamiroalaica Sp. Nov
Mycol Progress (2015) 14: 120 DOI 10.1007/s11557-015-1140-1 ORIGINAL ARTICLE Phylogeny and morphology of Anthracoidea pamiroalaica sp. nov. infecting the endemic sedge Carex koshewnikowii in the Pamir Alai Mts (Tajikistan) Marcin Piątek1 & Matthias Lutz2 & Marcin Nobis3 & Arkadiusz Nowak4 Received: 24 July 2015 /Revised: 16 October 2015 /Accepted: 2 November 2015 /Published online: 28 November 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract AnovelAnthracoidea species, A. pamiroalaica on Introduction the endemic sedge Carex koshewnikowii, is described and illustrated from the Pamir Alai Mts in Tajikistan (Central The genus Anthracoidea Bref., typified by Anthracoidea Asia). The new species is phenotypically nearly identical with caricis (Pers.) Bref., includes smut fungi infecting host plants Anthracoidea sempervirentis, but clearly divergent genetical- in the Cyperaceae (mostly species of Carex L.), forming glo- ly. Phylogenetic analyses based on LSU sequences showed boid sori in the ovaries and having spores produced directly on affinity of Anthracoidea pamiroalaica to A. baldensis, the outer surface of the reduced achenes (Kukkonen 1963; A. rupestris, A. capillaris,andA. vankyi infecting host sedges Vánky 2002). The species delimitation traditionally was based in different Carex sections (Baldenses, Rupestres, on comparative morphology and phenotypic differences be- Chlorostachyae, and Phaestoglochin, respectively), but not tween Anthracoidea species attacking host plants within a to A. misandrae,andA. sempervirentis, two sequenced spe- particular Carex section (Nannfeldt 1979;Vánky1979, cies parasitic on host species from the section Aulocystis.This 2012). The first molecular phylogenetic study using LSU phylogenetic placement is briefly discussed in the context of rDNA sequences including 28 Anthracoidea species (and Anthracoidea evolution. -
Thematic Area: Conservation of Fungi Moderator: Dr
XVI Congress of Euroepan Mycologists, N. Marmaras, Halkidiki, Greece September 18-23, 2011 Abstracts NAGREF-Forest Research Institute, Vassilika, Thessaloniki, Greece. XVI CEM Organizing Committee Dr. Stephanos Diamandis (chairman, Greece) Dr. Charikleia (Haroula) Perlerou (Greece) Dr. David Minter (UK, ex officio, EMA President) Dr. Tetiana Andrianova (Ukraine, ex officio, EMA Secretary) Dr. Zapi Gonou (Greece, ex officio, EMA Treasurer) Dr. Eva Kapsanaki-Gotsi (University of Athens, Greece) Dr. Thomas Papachristou (Greece, ex officio, Director of the FRI) Dr. Nadia Psurtseva (Russia) Mr. Vasilis Christopoulos (Greece) Mr. George Tziros (Greece) Dr. Eleni Topalidou (Greece) XVI CEM Scientific Advisory Committee Professor Dr. Reinhard Agerer (University of Munich, Germany) Dr. Vladimir Antonin (Moravian Museum, Brno, Czech Republic) Dr. Paul Cannon (CABI & Royal Botanic Gardens, Kew, UK) Dr. Anders Dahlberg (Swedish Species Information Centre, Uppsala, Sweden) Dr. Cvetomir Denchev (Institute of Biodiversity and Ecosystem Research , Bulgarian Academy of Sciences, Bulgaria) Dr. Leo van Griensven (Wageningen University & Research, Netherlands) Dr. Eva Kapsanaki-Gotsi (University of Athens, Greece) Professor Olga Marfenina (Moscow State University, Russia) Dr. Claudia Perini (University of Siena, Italy) Dr. Reinhold Poeder (University of Innsbruck, Austria) Governing Committee of the European Mycological Association (2007-2011) Dr. David Minter President, UK Dr. Stephanos Diamandis Vice-President, Greece Dr. Tetiana Andrianova Secretary, Ukraine Dr. Zacharoula Gonou-Zagou Treasurer, Greece Dr. Izabela Kalucka Membership Secretary, Poland Dr. Ivona Kautmanova Meetings Secretary, Slovakia Dr. Machiel Nordeloos Executive Editor, Netherlands Dr. Beatrice Senn-Irlett Conservation officer, Switzerland Only copy-editing and formatting of abstracts have been done, therefore the authors are fully responsible for the scientific content of their abstracts Abstract Book editors Dr.