UGC - Major Research Project Final Report 2013 – 2017
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Mosquito Species Identification Using Convolutional Neural Networks With
www.nature.com/scientificreports OPEN Mosquito species identifcation using convolutional neural networks with a multitiered ensemble model for novel species detection Adam Goodwin1,2*, Sanket Padmanabhan1,2, Sanchit Hira2,3, Margaret Glancey1,2, Monet Slinowsky2, Rakhil Immidisetti2,3, Laura Scavo2, Jewell Brey2, Bala Murali Manoghar Sai Sudhakar1, Tristan Ford1,2, Collyn Heier2, Yvonne‑Marie Linton4,5,6, David B. Pecor4,5,6, Laura Caicedo‑Quiroga4,5,6 & Soumyadipta Acharya2* With over 3500 mosquito species described, accurate species identifcation of the few implicated in disease transmission is critical to mosquito borne disease mitigation. Yet this task is hindered by limited global taxonomic expertise and specimen damage consistent across common capture methods. Convolutional neural networks (CNNs) are promising with limited sets of species, but image database requirements restrict practical implementation. Using an image database of 2696 specimens from 67 mosquito species, we address the practical open‑set problem with a detection algorithm for novel species. Closed‑set classifcation of 16 known species achieved 97.04 ± 0.87% accuracy independently, and 89.07 ± 5.58% when cascaded with novelty detection. Closed‑set classifcation of 39 species produces a macro F1‑score of 86.07 ± 1.81%. This demonstrates an accurate, scalable, and practical computer vision solution to identify wild‑caught mosquitoes for implementation in biosurveillance and targeted vector control programs, without the need for extensive image database development for each new target region. Mosquitoes are one of the deadliest animals in the world, infecting between 250–500 million people every year with a wide range of fatal or debilitating diseases, including malaria, dengue, chikungunya, Zika and West Nile Virus1. -
Data-Driven Identification of Potential Zika Virus Vectors Michelle V Evans1,2*, Tad a Dallas1,3, Barbara a Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8
RESEARCH ARTICLE Data-driven identification of potential Zika virus vectors Michelle V Evans1,2*, Tad A Dallas1,3, Barbara A Han4, Courtney C Murdock1,2,5,6,7,8, John M Drake1,2,8 1Odum School of Ecology, University of Georgia, Athens, United States; 2Center for the Ecology of Infectious Diseases, University of Georgia, Athens, United States; 3Department of Environmental Science and Policy, University of California-Davis, Davis, United States; 4Cary Institute of Ecosystem Studies, Millbrook, United States; 5Department of Infectious Disease, University of Georgia, Athens, United States; 6Center for Tropical Emerging Global Diseases, University of Georgia, Athens, United States; 7Center for Vaccines and Immunology, University of Georgia, Athens, United States; 8River Basin Center, University of Georgia, Athens, United States Abstract Zika is an emerging virus whose rapid spread is of great public health concern. Knowledge about transmission remains incomplete, especially concerning potential transmission in geographic areas in which it has not yet been introduced. To identify unknown vectors of Zika, we developed a data-driven model linking vector species and the Zika virus via vector-virus trait combinations that confer a propensity toward associations in an ecological network connecting flaviviruses and their mosquito vectors. Our model predicts that thirty-five species may be able to transmit the virus, seven of which are found in the continental United States, including Culex quinquefasciatus and Cx. pipiens. We suggest that empirical studies prioritize these species to confirm predictions of vector competence, enabling the correct identification of populations at risk for transmission within the United States. *For correspondence: mvevans@ DOI: 10.7554/eLife.22053.001 uga.edu Competing interests: The authors declare that no competing interests exist. -
RESCON 2020 Proceedings
POSTGRADUATE INSTITUTE OF SCIENCE UNIVERSITY OF PERADENIYA SRI LANKA PGIS RESEARCH CONGRESS 2020 PROCEEDINGS 26th - 28th November 2020 Copyright © 2020 by Postgraduate Institute of Science All rights reserved. No part of this publication may be reproduced, distributed, stored in a retrieval system, and transmitted in any form or by any means, including photocopying, recording, or other electronic or mechanical methods, without the prior written permission of the publisher. ISBN 978-955-8787-10-6 Published by Postgraduate Institute of Science (PGIS) University of Peradeniya Peradeniya 20400 SRI LANKA Printed by Sanduni Offset Printers (Pvt) Ltd, 1/4, Sarasavi Uyana Goodshed Road, Sarasavi Uyana, Peradeniya 20400, Sri Lanka Printed in the Democratic Socialist Republic of Sri Lanka ii TABLE OF CONTENTS Message from the Director, Postgraduate Institute of Science ....................................... v Message from the Congress Chairperson ..................................................................... vii Message from the Editor-in-Chief .................................................................................ix Message from the Chief Guest .......................................................................................xi Editorial Board ............................................................................................................ xiii Academic Coordinators of the Virtual Technical Sessions .........................................xiv A Brief Biography of the Keynote Speaker ................................................................. -
A Review of the Mosquito Species (Diptera: Culicidae) of Bangladesh Seth R
Irish et al. Parasites & Vectors (2016) 9:559 DOI 10.1186/s13071-016-1848-z RESEARCH Open Access A review of the mosquito species (Diptera: Culicidae) of Bangladesh Seth R. Irish1*, Hasan Mohammad Al-Amin2, Mohammad Shafiul Alam2 and Ralph E. Harbach3 Abstract Background: Diseases caused by mosquito-borne pathogens remain an important source of morbidity and mortality in Bangladesh. To better control the vectors that transmit the agents of disease, and hence the diseases they cause, and to appreciate the diversity of the family Culicidae, it is important to have an up-to-date list of the species present in the country. Original records were collected from a literature review to compile a list of the species recorded in Bangladesh. Results: Records for 123 species were collected, although some species had only a single record. This is an increase of ten species over the most recent complete list, compiled nearly 30 years ago. Collection records of three additional species are included here: Anopheles pseudowillmori, Armigeres malayi and Mimomyia luzonensis. Conclusions: While this work constitutes the most complete list of mosquito species collected in Bangladesh, further work is needed to refine this list and understand the distributions of those species within the country. Improved morphological and molecular methods of identification will allow the refinement of this list in years to come. Keywords: Species list, Mosquitoes, Bangladesh, Culicidae Background separation of Pakistan and India in 1947, Aslamkhan [11] Several diseases in Bangladesh are caused by mosquito- published checklists for mosquito species, indicating which borne pathogens. Malaria remains an important cause of were found in East Pakistan (Bangladesh). -
MS V18 N2 P199-214.Pdf
Mosquito Systematics Vol. 18(2) 1986 199 Biography of Elizabeth Nesta Marks Elizabeth Marks was born in Dublin, Ireland, on 28th April 1918 and was christened in St. Patrick's Cathedral (with which a parson ancestor had been associated), hence her nick-name Patricia or Pat. Her father, an engineering graduate of Trinity College, Dublin, had worked as a geologist in Queensland before returning to Dublin to complete his medical course. In 1920 her parents took her to their home town, Brisbane, where her father practiced as an eye specialist. Although an only child, she grew up in a closely knit family of uncles, aunts and cousins. Her grandfather retired in 1920 in Camp Mountain near Samford, 14 miles west of Brisbane, to a property known as "the farm" though most of it was under natural forest. She early developed a love of and interest in the bush. Saturday afternoons often involved outings with the Queensland Naturalists' Club (QNC), Easters were spent at QNC camps, Sundays and long holidays at the farm. Her mother was a keen horsewoman and Pat was given her first pony when she was five. She saved up five pounds to buy her second pony, whose sixth generation descendant is her present mount. In 1971 she inherited part of the farm, with an old holiday house, and has lived there since 1982. Primary schooling at St. John's Cathedral Day School, close to home, was followed by four years boarding at the Glennie Memorial School, Toowoomba, of which she was Dux in 1934. It was there that her interest in zoology began to crystallize. -
A Classification System for Mosquito Life Cycles: Life Cycle Types for Mosquitoes of the Northeastern United States
June, 2004 Journal of Vector Ecology 1 Distinguished Achievement Award Presentation at the 2003 Society for Vector Ecology Meeting A classification system for mosquito life cycles: life cycle types for mosquitoes of the northeastern United States Wayne J. Crans Mosquito Research and Control, Department of Entomology, Rutgers University, 180 Jones Avenue, New Brunswick, NJ 08901, U.S.A. Received 8 January 2004; Accepted 16 January 2004 ABSTRACT: A system for the classification of mosquito life cycle types is presented for mosquito species found in the northeastern United States. Primary subdivisions include Univoltine Aedine, Multivoltine Aedine, Multivoltine Culex/Anopheles, and Unique Life Cycle Types. A montotypic subdivision groups life cycle types restricted to single species. The classification system recognizes 11 shared life cycle types and three that are limited to single species. Criteria for assignments include: 1) where the eggs are laid, 2) typical larval habitat, 3) number of generations per year, and 4) stage of the life cycle that overwinters. The 14 types in the northeast have been named for common model species. A list of species for each life cycle type is provided to serve as a teaching aid for students of mosquito biology. Journal of Vector Ecology 29 (1): 1-10. 2004. Keyword Index: Mosquito biology, larval mosquito habitats, classification of mosquito life cycles. INTRODUCTION strategies that do not fit into any of the four basic temperate types that Bates described in his book. Two There are currently more than 3,000 mosquito of the mosquitoes he suggested as model species occur species in the world grouped in 39 genera and 135 only in Europe and one of his temperate life cycle types subgenera (Clements 1992, Reinert 2000, 2001). -
Fly Times 59
FLY TIMES ISSUE 59, October, 2017 Stephen D. Gaimari, editor Plant Pest Diagnostics Branch California Department of Food & Agriculture 3294 Meadowview Road Sacramento, California 95832, USA Tel: (916) 262-1131 FAX: (916) 262-1190 Email: [email protected] Welcome to the latest issue of Fly Times! As usual, I thank everyone for sending in such interesting articles. I hope you all enjoy reading it as much as I enjoyed putting it together. Please let me encourage all of you to consider contributing articles that may be of interest to the Diptera community for the next issue. Fly Times offers a great forum to report on your research activities and to make requests for taxa being studied, as well as to report interesting observations about flies, to discuss new and improved methods, to advertise opportunities for dipterists, to report on or announce meetings relevant to the community, etc., with all the associated digital images you wish to provide. This is also a great placeto report on your interesting (and hopefully fruitful) collecting activities! Really anything fly-related is considered. And of course, thanks very much to Chris Borkent for again assembling the list of Diptera citations since the last Fly Times! The electronic version of the Fly Times continues to be hosted on the North American Dipterists Society website at http://www.nadsdiptera.org/News/FlyTimes/Flyhome.htm. For this issue, I want to again thank all the contributors for sending me such great articles! Feel free to share your opinions or provide ideas on how to improve the newsletter. -
(Diptera, Culicidae) VIII. a Prodrome of the Genus Orthopodomyia
contributions of the American EntomoIogicaI Institute Volume 3, Number 2, 1968 MOSQUITO STUDIES (Diptera, Culicidae) VIII. A prodrome of the genus Orthopodomyia. By Thomas J. Zavortink CONTRIBUTIONS of the AMERICAN ENTOMOLOGICAL INSTITUTE The Contributions are for larder papers on insects. Each paper is a separate number, with separate pagination and index. Separate numbers aggregating about 500 pages constitute a volume. Issues appear irregularly, as suitable manuscripts are available. Copies are sold separately or in subscriptions to complete volumes. Complete volumes are $12.00. The price of separate numbers varies. Subscribers are billed for each volume with its beginning number, and receive the parts as issued. Orders for separate numbers that total less than $8.00 must be accompanied by payment. Address orders or correspondence to the American Entomological Institute, 5950 Warren Road, Ann Arbor, Michigan 48105, U. S. A. Parts of Volume 1, with prices No. 1. Dasch, Clement E., 1964. The Neotropic Diplazontinae (Hymenoptera, Ichneumonidae). 75 pages, 69 figures. Price: $2.25, postpaid No. 2. Mosquito Studies (Diptera, Culicidae), 1965. I. Belkin, John N. , g al. A project for a systematic study of the mosquitoes of Middle America. II. Belkin, John N., --et al. Methods for the collection, rearing and preservation of mosquitoes. 78 pages, 4 figures. Price: $2.25, postpaid No. 2a. Same as no. 2, but in Spanish. Price: $2.25, postpaid No. 3. Matthews, Robert W., 1965. The biology of Heriades carinata Cresson. (Hymenoptera, Megachilidae) 33 pages, 23 figures. Price:O,postpaid No. 4. Mosquito studies (Diptera, Culicidae), 1965. III. Ramalingam, Shivaji, and John N. Belkin. -
Mosquito Biodiversity (Diptera: Culicidae) in Auroville, Puducherry
WHO collaborating Centre for Research and Training in Lymphatic filariasis and Integrated Vector Management. Mosquito Biodiversity (Diptera: Culicidae) in Auroville, Puducherry REPORT SUBMITTED TO THE AUROVILLE PUDUCHERRY BY ICMR-VECTOR CONTROL RESEARCH CENTRE PUDUCHERRY SEPTEMBER P a g e | 2 Acknowledgements We owe our deepest gratitude to Dr. Lucas Dengel, (Founder Executive Eco Pro, Auroville & Research Project Mentor) and Ms. Suryamayi Clarence Smith (Executive Co- founder of Auroville Research Platform) for extending support and facilitating smooth conduct of field survey in Auroville. We are grateful to the Auroville Working Committee for according permission to access various places within Auroville This work was submitted to the Pondicherry University, Puducherry in partial fulfillment for the requirement of degree of Master of Science in Public Health Entomology (M.Sc. in PHE) by Ms. P. Visa Shalini under the supervision of Dr A. N. Shriram, Scientist “C”, Division of Vector Biology & Control P a g e | 3 Introduction Mosquitoes are of great significance for their nuisance biting and their role in the transmission of several parasitic and viral diseases viz. malaria, lymphatic filariasis, dengue, zika, yellow fever, chikungunya, Japanese Encephalitis etc. The breeding habitat diversity determines mosquito abundance, resulting in the transmission of different pathogens (Adebote et al., 2008; Emidi et al., 2017). Only, 10% of the mosquito species recorded are efficient vectors of pathogens with considerable public health significance (Manguin and Boete 2011), that have been historically responsible for some of the worst epidemics mankind has witnessed. The principal vectors of diseases belong to three genera viz. Anopheles, Aedes and Culex, of which some mosquito species are highly and successful invasive in nature e.g. -
The Genus Or Thopodomyla Theobald in Southeast Asia ’
THE GENUS OR THOPODOMYLA THEOBALD IN SOUTHEAST ASIA ’ BY Thomas J. Zavortink2 INTRODUCTION This paper treats the 7 species of Orthopodomyia which occur in the Southeast Asian area. Although it has been 1 argely extracted from a m ore comprehensive study of the entire genus (Zavortink 1968), several significant changes and additions have been made. These include the following: keys to species have been rewritten and made more artificial; descriptions of the spe- cies have been shortened and restricted to characters which are diagnostic or at least characteristic of one or more species; discussions and group descrip- tions have been modified to pertain only to species found within the Southeast Asian region; descriptions have been corrected, where necessary, to accomo- date variations observed during examination of additional specimens; sections on distribution and biology now include more extensive data for the Thailand collections; and a recently described species has been included. The terminology of the present paper generally conforms to that of Belkin 1962 and the format to that of Bram (1967), Delfinado (1967, 1968), and Knight I 19681 . An asterisk following the abbreviations used (d = male, 9 = fe- male, P = pupa, and L = larva) indicates that all or some portion of that sex or stage is illustrated. Abbreviations used for the references to the literature conform to the World List of Scientific Periodicals, 3rd ed., Academic Press, 1952. Types of the included species which are in the British Museum (Natural History) and the United States National Museum have been studied by me. In addition to material accumulated by the Southeast Asia Mosquito Project, specimens from the following institutions were examined: Bernice P. -
P2699 Identification Guide to Adult Mosquitoes in Mississippi
Identification Guide to Adult Mosquitoes in Mississippi es Identification Guide to Adult Mosquitoes in Mississippi By Wendy C. Varnado, Jerome Goddard, and Bruce Harrison Cover photo by Dr. Blake Layton, Mississippi State University Extension Service. Preface Entomology, and Plant Pathology at Mississippi State University, provided helpful comments and Mosquitoes and the diseases they transmit are in- other supportIdentification for publication and ofGeographical this book. Most Distri- creasing in frequency and geographic distribution. butionfigures of used the inMosquitoes this book of are North from America, Darsie, R. North F. and As many as 1,000 people were exposed recently ofWard, Mexico R. A., to dengue fever during an outbreak in the Florida Mos- Keys. “New” mosquito-borne diseases such as quitoes of, NorthUniversity America Press of Florida, Gainesville, West Nile and Chikungunya have increased pub- FL, 2005, and Carpenter, S. and LaCasse, W., lic awareness about disease potential from these , University of California notorious pests. Press, Berkeley, CA, 1955. None of these figures are This book was written to provide citizens, protected under current copyrights. public health workers, school teachers, and other Introduction interested parties with a hands-on, user-friendly guide to Mississippi mosquitoes. The book’s util- and Background ity may vary with each user group, and that’s OK; some will want or need more detail than others. Nonetheless, the information provided will allow There has never been a systematic, statewide you to identify mosquitoes found in Mississippi study of mosquitoes in Mississippi. Various au- with a fair degree of accuracy. For more informa- thors have reported mosquito collection records tion about mosquito species occurring in the state as a result of surveys of military installations in and diseases they may transmit, contact the ento- the state and/or public health malaria inspec- mology staff at the Mississippi State Department of tions. -
Zika Virus: an Updated Review of Competent Or Naturally Infected Mosquitoes Yanouk Epelboin, Stanislas Talaga, Loïc Epelboin, Isabelle Dusfour
Zika virus: An updated review of competent or naturally infected mosquitoes Yanouk Epelboin, Stanislas Talaga, Loïc Epelboin, Isabelle Dusfour To cite this version: Yanouk Epelboin, Stanislas Talaga, Loïc Epelboin, Isabelle Dusfour. Zika virus: An updated review of competent or naturally infected mosquitoes. PLoS Neglected Tropical Diseases, Public Library of Science, 2017, 11 (11), pp.e0005933. 10.1371/journal.pntd.0005933. hal-01844517 HAL Id: hal-01844517 https://hal.archives-ouvertes.fr/hal-01844517 Submitted on 19 Jul 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. REVIEW Zika virus: An updated review of competent or naturally infected mosquitoes Yanouk Epelboin1*, Stanislas Talaga1, Loïc Epelboin2,3, Isabelle Dusfour1 1 VectopoÃle Amazonien Emile Abonnenc, Vector Control and Adaptation Unit, Institut Pasteur de la Guyane, Cayenne, French Guiana, France, 2 Infectious and Tropical Diseases Unit, Centre Hospitalier AndreÂe Rosemon, Cayenne, French Guiana, France, 3 Ecosystèmes amazoniens et pathologie tropicale (EPAT), EA 3593, UniversiteÂ