Pentosan Polysulfate Binds to STRO
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Cvhsp (HSPB7) Mouse Monoclonal Antibody [Clone ID: OTI1D11] Product Data
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TA501310 cvHSP (HSPB7) Mouse Monoclonal Antibody [Clone ID: OTI1D11] Product data: Product Type: Primary Antibodies Clone Name: OTI1D11 Applications: FC, IF, WB Recommended Dilution: WB 1:2000, IF 1:100, FLOW 1:100 Reactivity: Human, Mouse, Rat Host: Mouse Isotype: IgG1 Clonality: Monoclonal Immunogen: Full length human recombinant protein of human HSPB7(NP_055239) produced in HEK293T cell. Formulation: PBS (PH 7.3) containing 1% BSA, 50% glycerol and 0.02% sodium azide. Concentration: 0.63 mg/ml Purification: Purified from mouse ascites fluids or tissue culture supernatant by affinity chromatography (protein A/G) Conjugation: Unconjugated Storage: Store at -20°C as received. Stability: Stable for 12 months from date of receipt. Predicted Protein Size: 18.4 kDa Gene Name: heat shock protein family B (small) member 7 Database Link: NP_055239 Entrez Gene 29818 MouseEntrez Gene 50565 RatEntrez Gene 27129 Human Q9UBY9 Synonyms: cvHSP This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 cvHSP (HSPB7) Mouse Monoclonal Antibody [Clone ID: OTI1D11] – TA501310 Product images: HEK293T cells were transfected with the pCMV6- ENTRY control (Cat# [PS100001], Left lane) or pCMV6-ENTRY HSPB7 (Cat# [RC202861], Right lane) cDNA for 48 hrs and lysed. Equivalent amounts of cell lysates (5 ug per lane) were separated by SDS-PAGE and immunoblotted with anti-HSPB7(Cat# TA501310). -
Anti- Histone-H3 Antibody
anti- Histone-H3 antibody Product Information Catalog No.: FNab03890 Size: 100μg Form: liquid Purification: Immunogen affinity purified Purity: ≥95% as determined by SDS-PAGE Host: Rabbit Clonality: polyclonal Clone ID: None IsoType: IgG Storage: PBS with 0.02% sodium azide and 50% glycerol pH 7.3, -20℃ for 12 months (Avoid repeated freeze / thaw cycles.) Background HIST2H3A,histone cluster 2, H3a.It is the core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. HIST2H3A is Expressed during S phase, then expression strongly decreases as cell division slows down during the process of differentiation. Immunogen information Immunogen: histone cluster 2, H3a Synonyms: H3/n, H3/o, H3F2, H3FM, HIST2H3A, HIST2H3C, HIST2H3D, histone cluster 2, H3a, Histone H3, Histone H3.2, Histone H3/m, Histone H3/o Observed MW: 15-17 kDa Uniprot ID : Q71DI3 Application 1 Wuhan Fine Biotech Co., Ltd. B9 Bld, High-Tech Medical Devices Park, No. 818 Gaoxin Ave.East Lake High-Tech Development Zone.Wuhan, Hubei, China(430206) Tel :( 0086)027-87384275 Fax: (0086)027-87800889 www.fn-test.com Reactivity: Human, Mouse, Rat Tested Application: ELISA, WB, IHC, IF Recommended dilution: WB: 1:500-1:5000; IHC: 1:50-1:200; IF: 1:20-1:200 Image: Immunohistochemistry of paraffin-embedded human breast cancer tissue slide using FNab03890(Histone-H3 Antibody) at dilution of 1:50 Immunofluorescent analysis of HEK-293 cells using FNab03890 (Histone-H3 Antibody) at dilution of 1:50 and Rhodamine-Goat anti-Rabbit IgG 2 Wuhan Fine Biotech Co., Ltd. -
Androgen Receptor Interacting Proteins and Coregulators Table
ANDROGEN RECEPTOR INTERACTING PROTEINS AND COREGULATORS TABLE Compiled by: Lenore K. Beitel, Ph.D. Lady Davis Institute for Medical Research 3755 Cote Ste Catherine Rd, Montreal, Quebec H3T 1E2 Canada Telephone: 514-340-8260 Fax: 514-340-7502 E-Mail: [email protected] Internet: http://androgendb.mcgill.ca Date of this version: 2010-08-03 (includes articles published as of 2009-12-31) Table Legend: Gene: Official symbol with hyperlink to NCBI Entrez Gene entry Protein: Protein name Preferred Name: NCBI Entrez Gene preferred name and alternate names Function: General protein function, categorized as in Heemers HV and Tindall DJ. Endocrine Reviews 28: 778-808, 2007. Coregulator: CoA, coactivator; coR, corepressor; -, not reported/no effect Interactn: Type of interaction. Direct, interacts directly with androgen receptor (AR); indirect, indirect interaction; -, not reported Domain: Interacts with specified AR domain. FL-AR, full-length AR; NTD, N-terminal domain; DBD, DNA-binding domain; h, hinge; LBD, ligand-binding domain; C-term, C-terminal; -, not reported References: Selected references with hyperlink to PubMed abstract. Note: Due to space limitations, all references for each AR-interacting protein/coregulator could not be cited. The reader is advised to consult PubMed for additional references. Also known as: Alternate gene names Gene Protein Preferred Name Function Coregulator Interactn Domain References Also known as AATF AATF/Che-1 apoptosis cell cycle coA direct FL-AR Leister P et al. Signal Transduction 3:17-25, 2003 DED; CHE1; antagonizing regulator Burgdorf S et al. J Biol Chem 279:17524-17534, 2004 CHE-1; AATF transcription factor ACTB actin, beta actin, cytoplasmic 1; cytoskeletal coA - - Ting HJ et al. -
1 Supporting Information for a Microrna Network Regulates
Supporting Information for A microRNA Network Regulates Expression and Biosynthesis of CFTR and CFTR-ΔF508 Shyam Ramachandrana,b, Philip H. Karpc, Peng Jiangc, Lynda S. Ostedgaardc, Amy E. Walza, John T. Fishere, Shaf Keshavjeeh, Kim A. Lennoxi, Ashley M. Jacobii, Scott D. Rosei, Mark A. Behlkei, Michael J. Welshb,c,d,g, Yi Xingb,c,f, Paul B. McCray Jr.a,b,c Author Affiliations: Department of Pediatricsa, Interdisciplinary Program in Geneticsb, Departments of Internal Medicinec, Molecular Physiology and Biophysicsd, Anatomy and Cell Biologye, Biomedical Engineeringf, Howard Hughes Medical Instituteg, Carver College of Medicine, University of Iowa, Iowa City, IA-52242 Division of Thoracic Surgeryh, Toronto General Hospital, University Health Network, University of Toronto, Toronto, Canada-M5G 2C4 Integrated DNA Technologiesi, Coralville, IA-52241 To whom correspondence should be addressed: Email: [email protected] (M.J.W.); yi- [email protected] (Y.X.); Email: [email protected] (P.B.M.) This PDF file includes: Materials and Methods References Fig. S1. miR-138 regulates SIN3A in a dose-dependent and site-specific manner. Fig. S2. miR-138 regulates endogenous SIN3A protein expression. Fig. S3. miR-138 regulates endogenous CFTR protein expression in Calu-3 cells. Fig. S4. miR-138 regulates endogenous CFTR protein expression in primary human airway epithelia. Fig. S5. miR-138 regulates CFTR expression in HeLa cells. Fig. S6. miR-138 regulates CFTR expression in HEK293T cells. Fig. S7. HeLa cells exhibit CFTR channel activity. Fig. S8. miR-138 improves CFTR processing. Fig. S9. miR-138 improves CFTR-ΔF508 processing. Fig. S10. SIN3A inhibition yields partial rescue of Cl- transport in CF epithelia. -
Protein Interactions in the Cancer Proteome† Cite This: Mol
Molecular BioSystems View Article Online PAPER View Journal | View Issue Small-molecule binding sites to explore protein– protein interactions in the cancer proteome† Cite this: Mol. BioSyst., 2016, 12,3067 David Xu,ab Shadia I. Jalal,c George W. Sledge Jr.d and Samy O. Meroueh*aef The Cancer Genome Atlas (TCGA) offers an unprecedented opportunity to identify small-molecule binding sites on proteins with overexpressed mRNA levels that correlate with poor survival. Here, we analyze RNA-seq and clinical data for 10 tumor types to identify genes that are both overexpressed and correlate with patient survival. Protein products of these genes were scanned for binding sites that possess shape and physicochemical properties that can accommodate small-molecule probes or therapeutic agents (druggable). These binding sites were classified as enzyme active sites (ENZ), protein–protein interaction sites (PPI), or other sites whose function is unknown (OTH). Interestingly, the overwhelming majority of binding sites were classified as OTH. We find that ENZ, PPI, and OTH binding sites often occurred on the same structure suggesting that many of these OTH cavities can be used for allosteric modulation of Creative Commons Attribution 3.0 Unported Licence. enzyme activity or protein–protein interactions with small molecules. We discovered several ENZ (PYCR1, QPRT,andHSPA6)andPPI(CASC5, ZBTB32,andCSAD) binding sites on proteins that have been seldom explored in cancer. We also found proteins that have been extensively studied in cancer that have not been previously explored with small molecules that harbor ENZ (PKMYT1, STEAP3,andNNMT) and PPI (HNF4A, MEF2B,andCBX2) binding sites. All binding sites were classified by the signaling pathways to Received 29th March 2016, which the protein that harbors them belongs using KEGG. -
Loss of Supervillin Causes Myopathy with Myofibrillar Disorganization and Autophagic Vacuoles
University of Massachusetts Medical School eScholarship@UMMS Open Access Articles Open Access Publications by UMMS Authors 2020-08-01 Loss of supervillin causes myopathy with myofibrillar disorganization and autophagic vacuoles Carola Hedberg-Oldfors University of Gothenburg Et al. Let us know how access to this document benefits ou.y Follow this and additional works at: https://escholarship.umassmed.edu/oapubs Part of the Amino Acids, Peptides, and Proteins Commons, Cardiovascular Diseases Commons, Cell Biology Commons, Cellular and Molecular Physiology Commons, Molecular and Cellular Neuroscience Commons, Musculoskeletal Diseases Commons, Musculoskeletal, Neural, and Ocular Physiology Commons, Nervous System Diseases Commons, and the Neurology Commons Repository Citation Hedberg-Oldfors C, Luna EJ, Oldfors A, Knopp C. (2020). Loss of supervillin causes myopathy with myofibrillar disorganization and autophagic vacuoles. Open Access Articles. https://doi.org/10.1093/ brain/awaa206. Retrieved from https://escholarship.umassmed.edu/oapubs/4320 Creative Commons License This work is licensed under a Creative Commons Attribution-Noncommercial 4.0 License This material is brought to you by eScholarship@UMMS. It has been accepted for inclusion in Open Access Articles by an authorized administrator of eScholarship@UMMS. For more information, please contact [email protected]. doi:10.1093/brain/awaa206 BRAIN 2020: 143; 2406–2420 | 2406 Loss of supervillin causes myopathy with Downloaded from https://academic.oup.com/brain/article/143/8/2406/5890852 by Medical Center Library user on 17 September 2020 myofibrillar disorganization and autophagic vacuoles Carola Hedberg-Oldfors,1,* Robert Meyer,2,* Kay Nolte,3,* Yassir Abdul Rahim,1 Christopher Lindberg,4 Kristjan Karason,5 Inger Johanne Thuestad,6 Kittichate Visuttijai,1 Mats Geijer,7,8 Matthias Begemann,2 Florian Kraft,2 Eva Lausberg,2 Lea Hitpass,9 Rebekka Go¨tzl,10 Elizabeth J. -
Cardiac Signaling Genes Exhibit Unexpected Sequence Diversity in Sporadic Cardiomyopathy, Revealing HSPB7 Polymorphisms Associated with Disease Scot J
Research article Cardiac signaling genes exhibit unexpected sequence diversity in sporadic cardiomyopathy, revealing HSPB7 polymorphisms associated with disease Scot J. Matkovich,1 Derek J. Van Booven,1 Anna Hindes,1 Min Young Kang,1 Todd E. Druley,2,3 Francesco L.M. Vallania,3 Robi D. Mitra,3 Muredach P. Reilly,4 Thomas P. Cappola,4 and Gerald W. Dorn II1 1Center for Pharmacogenomics, Department of Medicine, 2Division of Pediatric Hematology and Oncology, Department of Pediatrics, and 3Center for Genome Sciences, Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, USA. 4Penn Cardiovascular Institute, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, USA. Sporadic heart failure is thought to have a genetic component, but the contributing genetic events are poorly defined. Here, we used ultra-high-throughput resequencing of pooled DNAs to identify SNPs in 4 biologically relevant cardiac signaling genes, and then examined the association between allelic variants and incidence of sporadic heart failure in 2 large Caucasian populations. Resequencing of DNA pools, each containing DNA from approximately 100 individuals, was rapid, accurate, and highly sensitive for identifying common and rare SNPs; it also had striking advantages in time and cost efficiencies over individual resequencing using conventional Sanger methods. In 2,606 individuals examined, we identified a total of 129 separate SNPs in the 4 cardiac signaling genes, including 23 nonsynonymous SNPs that we believe to be novel. Comparison of allele frequencies between 625 Caucasian nonaffected controls and 1,117 Caucasian individuals with systolic heart failure revealed 12 SNPs in the cardiovascular heat shock protein gene HSPB7 with greater proportional representation in the systolic heart failure group; all 12 SNPs were confirmed in an independent replication study. -
Open Data for Differential Network Analysis in Glioma
International Journal of Molecular Sciences Article Open Data for Differential Network Analysis in Glioma , Claire Jean-Quartier * y , Fleur Jeanquartier y and Andreas Holzinger Holzinger Group HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2/V, 8036 Graz, Austria; [email protected] (F.J.); [email protected] (A.H.) * Correspondence: [email protected] These authors contributed equally to this work. y Received: 27 October 2019; Accepted: 3 January 2020; Published: 15 January 2020 Abstract: The complexity of cancer diseases demands bioinformatic techniques and translational research based on big data and personalized medicine. Open data enables researchers to accelerate cancer studies, save resources and foster collaboration. Several tools and programming approaches are available for analyzing data, including annotation, clustering, comparison and extrapolation, merging, enrichment, functional association and statistics. We exploit openly available data via cancer gene expression analysis, we apply refinement as well as enrichment analysis via gene ontology and conclude with graph-based visualization of involved protein interaction networks as a basis for signaling. The different databases allowed for the construction of huge networks or specified ones consisting of high-confidence interactions only. Several genes associated to glioma were isolated via a network analysis from top hub nodes as well as from an outlier analysis. The latter approach highlights a mitogen-activated protein kinase next to a member of histondeacetylases and a protein phosphatase as genes uncommonly associated with glioma. Cluster analysis from top hub nodes lists several identified glioma-associated gene products to function within protein complexes, including epidermal growth factors as well as cell cycle proteins or RAS proto-oncogenes. -
Downregulation of the Tumor Suppressor HSPB7, Involved in the P53 Pathway, in Renal Cell Carcinoma by Hypermethylation
1490 INTERNATIONAL JOURNAL OF ONCOLOGY 44: 1490-1498, 2014 Downregulation of the tumor suppressor HSPB7, involved in the p53 pathway, in renal cell carcinoma by hypermethylation JIAYING LIN1,2, ZHENZHONG DENG1, CHIZU TANIKAWA1, TARO SHUIN3, TSUNEHARU MIKI4, KOICHI MATSUDA1 and YUSUKE NAKAMURA1,2 1Laboratory of Molecular Medicine, Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo 108-8639, Japan; 2Section of Hematology/Oncology, Department of Medicine, University of Chicago, Chicago, IL 60637, USA; 3Department of Urology, School of Medicine, Kochi University, Kochi 783-8505; 4Department of Urology, Kyoto Prefectural University of Medicine, Kyoto 602-8566, Japan Received December 10, 2013; Accepted January 27, 2014 DOI: 10.3892/ijo.2014.2314 Abstract. In order to identify genes involved in renal carci- obesity, acquired cystic kidney disease and inherited suscepti- nogenesis, we analyzed the expression profile of renal cell bility (von Hippel-Lindau disease) (3,7,8) have been indicated, carcinomas (RCCs) using microarrays consisting of 27,648 but the etiological and pathological mechanisms of this disease cDNA or ESTs, and found a small heat shock protein, HSPB7, are still far from fully understood. to be significantly and commonly downregulated in RCC. Although local renal tumors can be surgically removed Subsequent quantitative PCR (qPCR) and immunohistochem- (9-11), distant metastasis is often observed even if the primary ical (IHC) analyses confirmed the downregulation of HSPB7 tumor is relatively small (12,13). Patients with metastatic in RCC tissues and cancer cell lines in both transcriptional RCC generally result in extremely poor outcomes with and protein levels. Bisulfite sequencing of a genomic region of overall median survival of around 13 months and the 5 year HSPB7 detected DNA hypermethylation of some segments of survival rate of <10% (13). -
A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans
Journal of Personalized Medicine Article A Genome-Wide Association Study of Idiopathic Dilated Cardiomyopathy in African Americans Huichun Xu 1,* ID , Gerald W. Dorn II 2, Amol Shetty 3, Ankita Parihar 1, Tushar Dave 1, Shawn W. Robinson 4, Stephen S. Gottlieb 4 ID , Mark P. Donahue 5, Gordon F. Tomaselli 6, William E. Kraus 5,7 ID , Braxton D. Mitchell 1,8 and Stephen B. Liggett 9,* 1 Division of Endocrinology, Diabetes and Nutrition, Department of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USA; [email protected] (A.P.); [email protected] (T.D.); [email protected] (B.D.M.) 2 Center for Pharmacogenomics, Department of Internal Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA; [email protected] 3 Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA; [email protected] 4 Division of Cardiovascular Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USA; [email protected] (S.W.R.); [email protected] (S.S.G.) 5 Division of Cardiology, Department of Medicine, Duke University Medical Center, Durham, NC 27708, USA; [email protected] (M.P.D.); [email protected] (W.E.K.) 6 Department of Medicine, Division of Cardiology, Johns Hopkins University, Baltimore, MD 21218, USA; [email protected] 7 Duke Molecular Physiology Institute, Duke University Medical Center, Durham, NC 27701, USA 8 Geriatrics Research and Education Clinical Center, Baltimore Veterans Administration -
HIST2H3A Antibody(C-Term) Affinity Purified Rabbit Polyclonal Antibody (Pab) Catalog # Ap19659b
10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 HIST2H3A Antibody(C-term) Affinity Purified Rabbit Polyclonal Antibody (Pab) Catalog # AP19659b Specification HIST2H3A Antibody(C-term) - Product Information Application WB,E Primary Accession Q71DI3 Other Accession P02299, P08898, P02302, P02301, Q6NXT2, Q6PI79, P84245, P84246, Q71LE2, P84244, P84243, P84249, Q6PI20, P84247, Q5E9F8, Q10453, P84233, P84228, Q4QRF4, P84229, P84227, Q6LED0, HIST2H3A Antibody (C-term) (Cat. P68433, P68431, #AP19659b) western blot analysis in MCF-7 P68432, Q16695, cell line lysates (35ug/lane).This NP_066403.2, demonstrates the HIST2H3A antibody C0HL66, C0HL67 detected the HIST2H3A protein (arrow). Reactivity Human Predicted Bovine, Mouse, Rat, Chicken, HIST2H3A Antibody(C-term) - Background Zebrafish, Xenopus, Histones are basic nuclear proteins that are C.Elegans, responsible Drosophila, Pig, for the nucleosome structure of the Rabbit Host Rabbit chromosomal fiber in Clonality Polyclonal eukaryotes. This structure consists of Isotype Rabbit Ig approximately 146 bp of DNA Calculated MW 15388 wrapped around a nucleosome, an octamer Antigen Region 108-136 composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin HIST2H3A Antibody(C-term) - Additional Information fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the Gene ID 126961;333932;653604 nucleosomes to form higher order chromatin structures. This gene is Other Names intronless and encodes a Histone H32, Histone H3/m, Histone H3/o, HIST2H3A member of the histone H3 family. Transcripts from this gene lack Target/Specificity polyA tails; instead, they contain a palindromic This HIST2H3A antibody is generated from termination rabbits immunized with a KLH conjugated element. -
A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family
Rockefeller University Digital Commons @ RU Student Theses and Dissertations 2018 A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family Linda Molla Follow this and additional works at: https://digitalcommons.rockefeller.edu/ student_theses_and_dissertations Part of the Life Sciences Commons A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY A Thesis Presented to the Faculty of The Rockefeller University in Partial Fulfillment of the Requirements for the degree of Doctor of Philosophy by Linda Molla June 2018 © Copyright by Linda Molla 2018 A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY Linda Molla, Ph.D. The Rockefeller University 2018 APOBEC2 is a member of the AID/APOBEC cytidine deaminase family of proteins. Unlike most of AID/APOBEC, however, APOBEC2’s function remains elusive. Previous research has implicated APOBEC2 in diverse organisms and cellular processes such as muscle biology (in Mus musculus), regeneration (in Danio rerio), and development (in Xenopus laevis). APOBEC2 has also been implicated in cancer. However the enzymatic activity, substrate or physiological target(s) of APOBEC2 are unknown. For this thesis, I have combined Next Generation Sequencing (NGS) techniques with state-of-the-art molecular biology to determine the physiological targets of APOBEC2. Using a cell culture muscle differentiation system, and RNA sequencing (RNA-Seq) by polyA capture, I demonstrated that unlike the AID/APOBEC family member APOBEC1, APOBEC2 is not an RNA editor. Using the same system combined with enhanced Reduced Representation Bisulfite Sequencing (eRRBS) analyses I showed that, unlike the AID/APOBEC family member AID, APOBEC2 does not act as a 5-methyl-C deaminase.