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Protocol Development for Somatic Embryogenesis, SSR Markers And
Asadi‑Aghbolaghi et al. Plant Methods (2021) 17:70 https://doi.org/10.1186/s13007‑021‑00768‑9 Plant Methods RESEARCH Open Access Protocol development for somatic embryogenesis, SSR markers and genetic modifcation of Stipagrostis pennata (Trin.) De Winter Masoumeh Asadi‑Aghbolaghi1, Beata Dedicova2* , Sonali Sachi Ranade2, Kim‑Cuong Le2, Farzad Sharifzadeh1, Mansoor Omidi1 and Ulrika Egertsdotter2 Abstract Background: Stipagrostis pennata (Trin.) De Winter is an important species for fxing sand in shifting and semi‑fxed sandy lands, for grazing, and potentially as a source of lignocellulose fbres for pulp and paper industry. The seeds have low viability, which limits uses for revegetation. Somatic embryogenesis ofers an alternative method for obtain‑ ing large numbers of plants from limited seed sources. Results: A protocol for plant regeneration from somatic embryos of S. pennata was developed. Somatic embryogen‑ esis was induced on Murashige & Skoog (MS) medium supplemented with 3 mg L–1 2,4‑D subsequently shoots were induced on MS medium and supplemented with 5 mg L–1 zeatin riboside. The highest· shoots induction was obtained when embryogenic callus derived from mature embryos· (96%) in combination with MS flter‑sterilized medium was used from Khuzestan location. The genetic stability of regenerated plants was analysed using ten simple sequence repeats (SSR) markers from S. pennata which showed no somaclonal variation in regenerated plants from somatic embryos of S. pennata. The regenerated plants of S. pennata showed genetic stability without any somaclonal varia‑ tion for the four pairs of primers that gave the expected amplicon sizes. This data seems very reliable as three of the PCR products belonged to the coding region of the genome. -
Plants of Desert Dunes
Avinoam Danin Plants of Desert Dunes With 84 Figures Springer Contents Introduction Sand Deserts of the World . 2.1 Distribution of Sand Dunes 3 2.2 Sand Mobility 3 2.2.1 The Modes of Sand Movement 3 2.2.2 Ripples 5 2.2.3 Plants as Modifiers of Local Dune Topography 8 2.2.4 Microbiotic Crust as a Sand Fixer 10 2.2.4.1 The Succession of Sand Crust Community 11 2.2.4.2 Disturbances of the Microbiotic Crust 15 2.2.4.2.1 Natural Disturbances 15 2.2.4.2.2 Destruction by Humans and Domestic Animals 17 2.2.4.3 Distribution of Microbiotic Crust on Sands 17 Environmental Stresses in the Sand Desert 21 Substrate Stability 21 .1 Sand Accretion 21 .2 Deflation 22 .3 Blowouts 22 .4 Injuries by Airborne Sand 23 3.2 Moisture Regime 23 3.3 Nutrients 24 4 Habitat Types of Desert Dunes 25 4.1 Mobile Dunes 25 4.1.1 Crest 25 4.1.2 Slipface 25 4.1.3 Dune Base, Plinth 26 4.2 Stable Dunes 26 4.3 Sites of Constant Deflation 26 4.4 Sand Covering Other Substrates 27 4.4.1 Mobile Sand Covering Sand Sheets 27 4.4.2 Sand Covering Hills or Plains of Hard or Soft Rocks 27 4.4.3 Sand Covering Salt Marshes 27 VIII Contents. 4.4.4 Sand Covering Shallow Aquifers of Fresh Water 29 4.4.5 Sand Covering Dry Water Courses (Wadis Arroyos) 29 5 Plant Case Histories and Ecomorphological Types 31 5.1 Species Requiring Sand Accumulation - Stipagrostis scoparia Type 34 5.1.1 Stipagrostis scoparia 35 5.1.2 Stipagrostis acutiflora 38 5.1.3 Stipagrostis pungens 38 5.1.4 Stipagrostis pennata 39 5.1.5 Stipagrostis sabulicola and Other Southern African Species .. -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Camera Traps Unravel the Effects of Weather Conditions and Predator Presence on the Activity Levels of Two Lizards
RESEARCH ARTICLE Some Like It Hot: Camera Traps Unravel the Effects of Weather Conditions and Predator Presence on the Activity Levels of Two Lizards Chris Broeckhoven*☯, Pieter le Fras Nortier Mouton☯ Department of Botany and Zoology, Stellenbosch University, Stellenbosch, South Africa ☯ These authors contributed equally to this work. * [email protected] Abstract It is generally assumed that favourable weather conditions determine the activity levels of lizards, because of their temperature-dependent behavioural performance. Inactivity, how- ever, might have a selective advantage over activity, as it could increase survival by reduc- ing exposure to predators. Consequently, the effects of weather conditions on the activity OPEN ACCESS patterns of lizards should be strongly influenced by the presence of predators. Using remote Citation: Broeckhoven C, Mouton PlFN (2015) Some camera traps, we test the hypothesis that predator presence and weather conditions inter- Like It Hot: Camera Traps Unravel the Effects of act to modulate daily activity levels in two sedentary cordylid lizards, Karusasaurus polyzo- Weather Conditions and Predator Presence on the nus and Ouroborus cataphractus. While both species are closely related and have a fully Activity Levels of Two Lizards. PLoS ONE 10(9): overlapping distribution, the former is a fast-moving lightly armoured lizard, whereas the lat- e0137428. doi:10.1371/journal.pone.0137428 ter is a slow-moving heavily armoured lizard. The significant interspecific difference in anti- Editor: Daniel E. Naya, Universidad de la Republica, predator morphology and consequently differential vulnerability to aerial and terrestrial URUGUAY predators, allowed us to unravel the effects of predation risk and weather conditions on Received: March 16, 2015 activity levels. -
Morphological and Ecological Correlates of Bite Force in the Rockdwelling Lizards Ouroborus Cataphractus And
bs_bs_banner Biological Journal of the Linnean Society, 2014, 111, 823–833. With 4 figures Under pressure: morphological and ecological correlates of bite force in the rock-dwelling lizards Ouroborus cataphractus and Karusasaurus polyzonus (Squamata: Cordylidae) Downloaded from https://academic.oup.com/biolinnean/article/111/4/823/2415797 by guest on 28 September 2021 CHRIS BROECKHOVEN* and P. LE FRAS N. MOUTON Department of Botany & Zoology, Stellenbosch University, Private Bag X1, Matieland 7602, Stellenbosch, South Africa Received 31 October 2013; revised 2 December 2013; accepted for publication 2 December 2013 Rock-dwelling lizards are hypothesized to be highly constrained in the evolution of head morphology and, consequently, bite force. Because the ability to generate a high bite force might be advantageous for a species’ dietary ecology, morphological changes in head configuration that allow individuals to maintain or improve their bite force under the constraint of crevice-dwelling behaviour are to be expected. The present study addressed this issue by examining head morphology, bite force, and a number of dietary traits in the rock-dwelling cordylid lizards Ouroborus cataphractus and Karusasaurus polyzonus. The results obtained show that O. cataphractus has a larger head and higher bite force than K. polyzonus. In K. polyzonus, head width, lower jaw length, and jaw closing-in lever are the best predictors of bite force, whereas head height is the main determinant of bite force in O. cataphractus. Although the observed difference in bite force between the species does not appear to be related to dietary patterns or prey handling, the prey spectrum available for intake was greater in O. -
The C4 Plant Lineages of Planet Earth
Journal of Experimental Botany, Vol. 62, No. 9, pp. 3155–3169, 2011 doi:10.1093/jxb/err048 Advance Access publication 16 March, 2011 REVIEW PAPER The C4 plant lineages of planet Earth Rowan F. Sage1,*, Pascal-Antoine Christin2 and Erika J. Edwards2 1 Department of Ecology and Evolutionary Biology, The University of Toronto, 25 Willcocks Street, Toronto, Ontario M5S3B2 Canada 2 Department of Ecology and Evolutionary Biology, Brown University, 80 Waterman St., Providence, RI 02912, USA * To whom correspondence should be addressed. E-mail: [email protected] Received 30 November 2010; Revised 1 February 2011; Accepted 2 February 2011 Abstract Using isotopic screens, phylogenetic assessments, and 45 years of physiological data, it is now possible to identify most of the evolutionary lineages expressing the C4 photosynthetic pathway. Here, 62 recognizable lineages of C4 photosynthesis are listed. Thirty-six lineages (60%) occur in the eudicots. Monocots account for 26 lineages, with a Downloaded from minimum of 18 lineages being present in the grass family and six in the sedge family. Species exhibiting the C3–C4 intermediate type of photosynthesis correspond to 21 lineages. Of these, 9 are not immediately associated with any C4 lineage, indicating that they did not share common C3–C4 ancestors with C4 species and are instead an independent line. The geographic centre of origin for 47 of the lineages could be estimated. These centres tend to jxb.oxfordjournals.org cluster in areas corresponding to what are now arid to semi-arid regions of southwestern North America, south- central South America, central Asia, northeastern and southern Africa, and inland Australia. -
Describing Species
DESCRIBING SPECIES Practical Taxonomic Procedure for Biologists Judith E. Winston COLUMBIA UNIVERSITY PRESS NEW YORK Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1999 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data © Winston, Judith E. Describing species : practical taxonomic procedure for biologists / Judith E. Winston, p. cm. Includes bibliographical references and index. ISBN 0-231-06824-7 (alk. paper)—0-231-06825-5 (pbk.: alk. paper) 1. Biology—Classification. 2. Species. I. Title. QH83.W57 1999 570'.1'2—dc21 99-14019 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 98765432 p 10 98765432 The Far Side by Gary Larson "I'm one of those species they describe as 'awkward on land." Gary Larson cartoon celebrates species description, an important and still unfinished aspect of taxonomy. THE FAR SIDE © 1988 FARWORKS, INC. Used by permission. All rights reserved. Universal Press Syndicate DESCRIBING SPECIES For my daughter, Eliza, who has grown up (andput up) with this book Contents List of Illustrations xiii List of Tables xvii Preface xix Part One: Introduction 1 CHAPTER 1. INTRODUCTION 3 Describing the Living World 3 Why Is Species Description Necessary? 4 How New Species Are Described 8 Scope and Organization of This Book 12 The Pleasures of Systematics 14 Sources CHAPTER 2. BIOLOGICAL NOMENCLATURE 19 Humans as Taxonomists 19 Biological Nomenclature 21 Folk Taxonomy 23 Binomial Nomenclature 25 Development of Codes of Nomenclature 26 The Current Codes of Nomenclature 50 Future of the Codes 36 Sources 39 Part Two: Recognizing Species 41 CHAPTER 3. -
Grasses of Namibia Contact
Checklist of grasses in Namibia Esmerialda S. Klaassen & Patricia Craven For any enquiries about the grasses of Namibia contact: National Botanical Research Institute Private Bag 13184 Windhoek Namibia Tel. (264) 61 202 2023 Fax: (264) 61 258153 E-mail: [email protected] Guidelines for using the checklist Cymbopogon excavatus (Hochst.) Stapf ex Burtt Davy N 9900720 Synonyms: Andropogon excavatus Hochst. 47 Common names: Breëblaarterpentyngras A; Broad-leaved turpentine grass E; Breitblättriges Pfeffergras G; dukwa, heng’ge, kamakama (-si) J Life form: perennial Abundance: uncommon to locally common Habitat: various Distribution: southern Africa Notes: said to smell of turpentine hence common name E2 Uses: used as a thatching grass E3 Cited specimen: Giess 3152 Reference: 37; 47 Botanical Name: The grasses are arranged in alphabetical or- Rukwangali R der according to the currently accepted botanical names. This Shishambyu Sh publication updates the list in Craven (1999). Silozi L Thimbukushu T Status: The following icons indicate the present known status of the grass in Namibia: Life form: This indicates if the plant is generally an annual or G Endemic—occurs only within the political boundaries of perennial and in certain cases whether the plant occurs in water Namibia. as a hydrophyte. = Near endemic—occurs in Namibia and immediate sur- rounding areas in neighbouring countries. Abundance: The frequency of occurrence according to her- N Endemic to southern Africa—occurs more widely within barium holdings of specimens at WIND and PRE is indicated political boundaries of southern Africa. here. 7 Naturalised—not indigenous, but growing naturally. < Cultivated. Habitat: The general environment in which the grasses are % Escapee—a grass that is not indigenous to Namibia and found, is indicated here according to Namibian records. -
A Phylogeny and Revised Classification of Squamata, Including 4161 Species of Lizards and Snakes
BMC Evolutionary Biology This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes BMC Evolutionary Biology 2013, 13:93 doi:10.1186/1471-2148-13-93 Robert Alexander Pyron ([email protected]) Frank T Burbrink ([email protected]) John J Wiens ([email protected]) ISSN 1471-2148 Article type Research article Submission date 30 January 2013 Acceptance date 19 March 2013 Publication date 29 April 2013 Article URL http://www.biomedcentral.com/1471-2148/13/93 Like all articles in BMC journals, this peer-reviewed article can be downloaded, printed and distributed freely for any purposes (see copyright notice below). Articles in BMC journals are listed in PubMed and archived at PubMed Central. For information about publishing your research in BMC journals or any BioMed Central journal, go to http://www.biomedcentral.com/info/authors/ © 2013 Pyron et al. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes Robert Alexander Pyron 1* * Corresponding author Email: [email protected] Frank T Burbrink 2,3 Email: [email protected] John J Wiens 4 Email: [email protected] 1 Department of Biological Sciences, The George Washington University, 2023 G St. -
A New Species of Sartidia (Graminae), Endemic to Ultramafic Soils ⁎ K
Available online at www.sciencedirect.com South African Journal of Botany 77 (2011) 598–607 www.elsevier.com/locate/sajb A new species of Sartidia (Graminae), endemic to ultramafic soils ⁎ K. Balkwill a, , G.J. Campbell-Young a, L. Fish b, J. Munday a, M.L. Frean a, M. Stalmans a,c a C.E. Moss Herbarium, School of Animal, Plant and Environmental Sciences, University of the Witwatersrand, Private Bag 3, Wits 2050, South Africa b National Herbarium, Pretoria (PRE), South African National Biodiversity Institute, Private Bag X101, Pretoria 0001, South Africa c International Conservation Services, PO Box 19139, Nelspruit 1200, South Africa Received 4 November 2009; received in revised form 27 November 2010; accepted 7 December 2010 Abstract A species of Sartidia De Winter, first collected by P.J. Muller in 1972 in the Cythna Letty Nature Reserve in Mpumalanga, does not match existing material of Sartidia, a genus comprising four species. The new species, S. dewinteri J. Munday & L. Fish, is most similar to S. jucunda (Schweick.) De Winter but differs in the leaf sheath colour, lower leaf blade surface texture, spikelet length and upper glume length. It differs also from all other species in the genus in the shape and branching of the inflorescence, the relative length of the lateral awns to the median awn, lemma body surface texture, callus shape and hair arrangement, palea shape and distribution. Sartidia dewinteri differs anatomically from S. angolensis and S. vanderystii in that the stereome strands in the leaf blades project partly or almost completely into the first order vascular bundles rather than not at all, and from S. -
Observations of Infanticide and Cannibalism in Four Species of Cordylid Lizard (Squamata: Cordylidae) in Captivity and the Wild
Herpetology Notes, volume 14: 725-729 (2021) (published online on 21 April 2021) Observations of infanticide and cannibalism in four species of cordylid lizard (Squamata: Cordylidae) in captivity and the wild Daniel van Blerk1,†, Jens Reissig2,†, Julia L. Riley 3,†, John Measey1,*, and James Baxter-Gilbert1 Cannibalism, the consumption of conspecifics, of Africa (Reissig, 2014), from Ethiopia to South Africa is taxonomically widespread and occurs across a (latitudinally) and Angola to Ethiopia (longitudinally). diversity of reptilian species (Polis and Myers, 1985). Here, we present observations of cannibalism by four A long-standing, yet antiquated, perspective views species of cordylid lizard, two from free-living wild cannibalism as an aberrant behaviour (as discussed populations and another two from captive settings. Since in Fox, 1975), but contemporary investigations have the natural history of many cordylid species remains noted its important role in the ecology and evolution of deficient, and several species have been observed to many wild populations (Robbins et al., 2013; Cooper display reasonably high degrees of sociality, like group- et al., 2015; Van Kleek et al., 2018). Examples of this living in Armadillo Lizards, Ouroborus cataphractus include habitat partitioning and optimising resource (Boie, 1828) (Mouton, 2011) and Sungazers, Smaug availability, as seen in juvenile Komodo Dragons, giganteus (Smith, 1844) (Parusnath, 2020), these Varanus komodoensis Ouwens, 1912, taking to the trees observations provide important insights -
Patterns of Species Richness, Endemism and Environmental Gradients of African Reptiles
Journal of Biogeography (J. Biogeogr.) (2016) ORIGINAL Patterns of species richness, endemism ARTICLE and environmental gradients of African reptiles Amir Lewin1*, Anat Feldman1, Aaron M. Bauer2, Jonathan Belmaker1, Donald G. Broadley3†, Laurent Chirio4, Yuval Itescu1, Matthew LeBreton5, Erez Maza1, Danny Meirte6, Zoltan T. Nagy7, Maria Novosolov1, Uri Roll8, 1 9 1 1 Oliver Tallowin , Jean-Francßois Trape , Enav Vidan and Shai Meiri 1Department of Zoology, Tel Aviv University, ABSTRACT 6997801 Tel Aviv, Israel, 2Department of Aim To map and assess the richness patterns of reptiles (and included groups: Biology, Villanova University, Villanova PA 3 amphisbaenians, crocodiles, lizards, snakes and turtles) in Africa, quantify the 19085, USA, Natural History Museum of Zimbabwe, PO Box 240, Bulawayo, overlap in species richness of reptiles (and included groups) with the other ter- Zimbabwe, 4Museum National d’Histoire restrial vertebrate classes, investigate the environmental correlates underlying Naturelle, Department Systematique et these patterns, and evaluate the role of range size on richness patterns. Evolution (Reptiles), ISYEB (Institut Location Africa. Systematique, Evolution, Biodiversite, UMR 7205 CNRS/EPHE/MNHN), Paris, France, Methods We assembled a data set of distributions of all African reptile spe- 5Mosaic, (Environment, Health, Data, cies. We tested the spatial congruence of reptile richness with that of amphib- Technology), BP 35322 Yaounde, Cameroon, ians, birds and mammals. We further tested the relative importance of 6Department of African Biology, Royal temperature, precipitation, elevation range and net primary productivity for Museum for Central Africa, 3080 Tervuren, species richness over two spatial scales (ecoregions and 1° grids). We arranged Belgium, 7Royal Belgian Institute of Natural reptile and vertebrate groups into range-size quartiles in order to evaluate the Sciences, OD Taxonomy and Phylogeny, role of range size in producing richness patterns.