Fauna & Flora Specialist Impact Assessment: Nuweveld West Wind
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Freshwater Fishes
WESTERN CAPE PROVINCE state oF BIODIVERSITY 2007 TABLE OF CONTENTS Chapter 1 Introduction 2 Chapter 2 Methods 17 Chapter 3 Freshwater fishes 18 Chapter 4 Amphibians 36 Chapter 5 Reptiles 55 Chapter 6 Mammals 75 Chapter 7 Avifauna 89 Chapter 8 Flora & Vegetation 112 Chapter 9 Land and Protected Areas 139 Chapter 10 Status of River Health 159 Cover page photographs by Andrew Turner (CapeNature), Roger Bills (SAIAB) & Wicus Leeuwner. ISBN 978-0-620-39289-1 SCIENTIFIC SERVICES 2 Western Cape Province State of Biodiversity 2007 CHAPTER 1 INTRODUCTION Andrew Turner [email protected] 1 “We live at a historic moment, a time in which the world’s biological diversity is being rapidly destroyed. The present geological period has more species than any other, yet the current rate of extinction of species is greater now than at any time in the past. Ecosystems and communities are being degraded and destroyed, and species are being driven to extinction. The species that persist are losing genetic variation as the number of individuals in populations shrinks, unique populations and subspecies are destroyed, and remaining populations become increasingly isolated from one another. The cause of this loss of biological diversity at all levels is the range of human activity that alters and destroys natural habitats to suit human needs.” (Primack, 2002). CapeNature launched its State of Biodiversity Programme (SoBP) to assess and monitor the state of biodiversity in the Western Cape in 1999. This programme delivered its first report in 2002 and these reports are updated every five years. The current report (2007) reports on the changes to the state of vertebrate biodiversity and land under conservation usage. -
Supplemental Information Biological Conservation No Safe Haven: Protection Levels Show Imperilled South African Reptiles Not
Supplemental Information Biological Conservation No safe haven: protection levels show imperilled South African reptiles not sufficiently safe- guarded despite low average extinction risk Krystal A. Tolley, Joshua Weeber, Bryan Maritz, Luke Verburgt, Michael F. Bates, Werner Conradie, Margaretha D. Hofmeyr, Andrew A. Turner, Jessica M. da Silva, Graham J. Alexander Supplemental Figures S1-S3 Figure S1. Species richness of threatened and Near Threatened reptiles in South Africa. 1 Figure S2. Reptile species richness in South Africa (darker shades indicate higher richness), with the current protected area network indicated by the black outlines. 2 Figure S3. Reptile species richness in South Africa (darker shades indicate higher richness), with the current protected area network indicated by the grey shaded polygons and the protected area expansion network indicated by black polygon outlines. 3 Appendix S1. Protocol for Measuring Protection Level for South African Reptiles The following process was applied to measure the level of protection for each species, using the interpreted distributions for the species (see main text). We evaluated the effectiveness of South Africa’s protected area network in ensuring that minimum viable populations of reptiles are protected. We set a conservation target for protection of at least 10 fragments of protected habitat, each with areas greater than 10 km2 (1000 ha) for a total of 100 km2 for each species. The fragment size was considered to be the minimum area that would support viable populations, with the total area considered to be the total area needed to safeguard the species survival into the future. The interpreted distributions for each species were then intersected with South Africa’s protected area network (Government of South Africa, 2010). -
A Systematic Study of Berkheya and Allies (Compositae)
A systematic study of Berkheya and allies (Compositae) A thesis submitted in the fulfilment of the requirements for the degree of Master of Science of Rhodes University by Ntombifikile Phaliso April 2013 Supervisor: Prof. N.P. Barker (Botany Department, Rhodes University) Co-supervisor: Dr. Robert McKenzie (Botany Department, Rhodes University) Table of contents: Title ……………………………………………………………………………..I Acknowledgements…………………………………………………………...III Declaration……………………………………………………………………IV Abstract…………………………………………………………………………1 Chapter 1: General Introduction……………………………………………..3 Chapter 2: The molecular phylogeny of Berkheya and allies……………...12 Aims………………………………………………………………………………………….12 2.1: Molecular (DNA-based) systematic……………………………………………………..12 2.2: Methods and Materials…………………………………………………………………..18 2.1.1: Sampling…………………………………………………………………………..18 2.1.2: DNA extraction, amplification and sequencing…………………………………..18 2.1.3: Sequence alignment……………………………………………………………..19 2.1.4: Phylogenetic Analyses …………………………………………………………...21 2.3: Results…………………………………………………………………………………..22 2.3.1: ITS data set………………………………………………………………………..22 2.3.2: psbA-trnH data set………………………………………………………………..23 2.3.3: Combined data set………………………………………………………………...24 2.4: Discussion……………………………………………………………………………….28 2.4.1: Phylogenetic relationships within the Berkheya clade……………………………28 2.4.2: Insights from the psbA-trnH & combined data set phylogenies………………….37 2.4.3: Taxonomic implications: paraphyly of Berkheya………………………………...39 2.4.4: Taxonomic Implications: Correspondence with -
Biodiversity and Ecology of Critically Endangered, Rûens Silcrete Renosterveld in the Buffeljagsrivier Area, Swellendam
Biodiversity and Ecology of Critically Endangered, Rûens Silcrete Renosterveld in the Buffeljagsrivier area, Swellendam by Johannes Philippus Groenewald Thesis presented in fulfilment of the requirements for the degree of Masters in Science in Conservation Ecology in the Faculty of AgriSciences at Stellenbosch University Supervisor: Prof. Michael J. Samways Co-supervisor: Dr. Ruan Veldtman December 2014 Stellenbosch University http://scholar.sun.ac.za Declaration I hereby declare that the work contained in this thesis, for the degree of Master of Science in Conservation Ecology, is my own work that have not been previously published in full or in part at any other University. All work that are not my own, are acknowledge in the thesis. ___________________ Date: ____________ Groenewald J.P. Copyright © 2014 Stellenbosch University All rights reserved ii Stellenbosch University http://scholar.sun.ac.za Acknowledgements Firstly I want to thank my supervisor Prof. M. J. Samways for his guidance and patience through the years and my co-supervisor Dr. R. Veldtman for his help the past few years. This project would not have been possible without the help of Prof. H. Geertsema, who helped me with the identification of the Lepidoptera and other insect caught in the study area. Also want to thank Dr. K. Oberlander for the help with the identification of the Oxalis species found in the study area and Flora Cameron from CREW with the identification of some of the special plants growing in the area. I further express my gratitude to Dr. Odette Curtis from the Overberg Renosterveld Project, who helped with the identification of the rare species found in the study area as well as information about grazing and burning of Renosterveld. -
Squamata: Lacertidae)
UNIVERSITY OF CALIFORNIA SANTA CRUZ EVOLUTIONARY CONSEQUENCES OF CENOZOIC CLIMATE CHANGE ON AFRICAN LACERTID LIZARDS (SQUAMATA: LACERTIDAE) A dissertation submitted in partial satisfaction of the requirements for the degree of DOCTOR OF PHILOSOPHY in ECOLOGY AND EVOLUTIONARY BIOLOGY by Christy A. Hipsley September 2012 The Dissertation of Christy Hipsley is approved: _________________________________ Professor Barry Sinervo, Chair _________________________________ Professor Giacomo Bernardi _________________________________ Professor Johannes Müller _________________________________ Tyrus Miller Vice Provost and Dean of Graduate Studies Copyright © by Christy A. Hipsley 2012 TABLE OF CONTENTS LIST OF TABLES AND FIGURES …………………………………………………………. v ABSTRACT ……………………………………………………………………………… vii ACKNOWLEDGEMENTS ………………………………………………………………… ix INTRODUCTION ……………………………………………………………………..……. 1 CHAPTER 1. INTEGRATION OF BAYESIAN MOLECULAR CLOCK METHODS AND FOSSIL-BASED SOFT BOUNDS REVEALS EARLY CENOZOIC ORIGIN OF AFRICAN LACERTIDS LIZARDS…………………………………………………………………… 9 Abstract ………………………………………………………………………… 9 Background …………………………………………………………………….. 10 Methods ………………………………………………………………………… 11 Results ……………………………………………………….…………………. 13 Discussion………………………………………………………….………………16 CHAPTER 2. MORPHOLOGICAL CONVERGENCE IN ARID-DWELLING AFRICAN LACERTID LIZARDS DRIVEN BY ECOLOGICAL AND CLIMATIC FACTORS………………. 22 Abstract ………………………………………………………………………... 22 Introduction ……………………………………………………………………. 23 Materials and Methods ………………………………………………………… 26 Results ……………………………………………………………………..…… -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
History and Function of Scale Microornamentation in Lacertid Lizards
JOURNALOFMORPHOLOGY252:145–169(2002) HistoryandFunctionofScaleMicroornamentation inLacertidLizards E.N.Arnold* NaturalHistoryMuseum,CromwellRoad,LondonSW75BD,UK ABSTRACTDifferencesinsurfacestructure(ober- mostfrequentlyinformsfromdryhabitatsorformsthat hautchen)ofbodyscalesoflacertidlizardsinvolvecell climbinvegetationawayfromtheground,situations size,shapeandsurfaceprofile,presenceorabsenceoffine wheredirtadhesionislessofaproblem.Microornamen- pitting,formofcellmargins,andtheoccurrenceoflongi- tationdifferencesinvolvingotherpartsofthebodyand tudinalridgesandpustularprojections.Phylogeneticin- othersquamategroupstendtocorroboratethisfunctional formationindicatesthattheprimitivepatterninvolved interpretation.Microornamentationfeaturescandevelop narrowstrap-shapedcells,withlowposteriorlyoverlap- onlineagesindifferentordersandappeartoactadditively pingedgesandrelativelysmoothsurfaces.Deviations inreducingshine.Insomecasesdifferentcombinations fromthisconditionproduceamoresculpturedsurfaceand maybeoptimalsolutionsinparticularenvironments,but havedevelopedmanytimes,althoughsubsequentovert lineageeffects,suchaslimitedreversibilityanddifferent reversalsareuncommon.Likevariationsinscaleshape, developmentalproclivities,mayalsobeimportantintheir differentpatternsofdorsalbodymicroornamentationap- peartoconferdifferentandconflictingperformancead- genesis.Thefinepitsoftenfoundoncellsurfacesare vantages.Theprimitivepatternmayreducefrictiondur- unconnectedwithshinereduction,astheyaresmaller inglocomotionandalsoenhancesdirtshedding,especially thanthewavelengthsofmostvisiblelight.J.Morphol. -
AFRICAN HERP NEWS ISSN 1017-6187 No
AFRICAN HERP NEWS ISSN 1017-6187 No. 36 December 2003 CONTENTS AFRICAN HERP NEWS E DITORIAL.____________________ l NEWSLETTER OF THE S HORT C OMMUNICATIONS MENEGON M et al. Nguu North forest reserve, Tanzania.___ 2 HERPETOLOGICAL ASSOCIATION OF AFRICA N ATURAL HISTORY NOTES CUNNINGHAM PL & W ADANK. Geochelone pardalis. ____ 9 CUNNINGHAM PL & W ADANK. Pachydactylus turneri 10 GEOGRAPHICAL D ISTRIBUTION RASMUSSEN JB. Micrelaps vaillanti 12 SCHMIDT WR & SCOTT E. Lamprophis-- swazicus-------- 14 DU TOIT DA & ALBLAS A. Nucras livida 15 ESTERHUIZEN A et al. Varanus albigularis 16 BROAD LEY DG & VAN DAELE P. Colopus wahlbergi 20 BAUER AM & LAMB T. Pachydactylus fasciatus 20 H ERPETOLOGICAL S URVEYS CUNNINGHAM M et al. Cockscomb Mt. South Africa. ____22 RECENT AFRICAN H ERPETOLOGICAL LITERATURE_____ _ _ 26 NEWS & ANNOUNCEMENTS_ _____________38 HAA FINANCIAL STATEMENTS.________ _ ____40 No. 36 December 2003 Af rican Herp News N o. 36 December 2003 HERPETOLOGICAL ASSOCIATION OF AFRICA http:/ /www. wits.ac.za/haa EDITORIAL FOUNDED 1965 The HAA is dedicated to the study and conservation of African reptiles and amphibians. Membership is open to anyone with an interest in the African herpetofauna. Members receive the It is now over a year since issue 35 of African Herp News and this long Association's journal, African Journal of Herpetolog,; (which publishes review papers, research overdue issue is replete with natural history and distribution notes, along with articles, short communications and book reviews - subject to peer review) and newsletter, Africa,i the latest update on African Herp literature from Bill Branch (apologies from Herp News (which includes short communications, life history notes, geographical distribution notes, herpetological survey reports, venom and snakebite notes, short book reviews, the editor for the delay). -
Reptiles and Amphibians of the Goegap Nature Reserve
their time underground in burrows. These amphibians often leave their burrows after heavy rains that are seldom. Reptiles And Amphibians Of The There are reptiles included in this report, which don’t occur here in Goegap but at the Augrabies Falls NP. So you can find here also the Nile monitor and the flat liz- Goegap Nature Reserve ard. Measuring reptiles By Tanja Mahnkopf In tortoises and terrapins the length is measured at the shell. Straight along the mid- line of the carapace. The SV-Length is the length of head and body (Snout to Vent). In lizards it easier to look for this length because their tail may be a regenerated one Introduction and these are often shorter than the original one. The length that is mentioned for the The reptiles are an ancient class on earth. The earliest reptile fossils are about 315 species in this report is the average to the maximum length. For the snakes I tried to million years old. During the aeons of time they evolved a great diversity of extinct give the total length because it is often impossible to say where the tail begins and and living reptiles. The dinosaurs and their relatives dominated the earth 150 million the body ends without holding the snake. But there was not for every snake a total years ago. Our living reptiles are remnants of that period or from a period after the length available. dinosaurs were extinct. Except of the chameleons (there are only two) you can find all reptiles in the appen- Obviously it looks like reptiles are not as successful as mammals. -
Annotated Checklist and Provisional Conservation Status of Namibian Reptiles
Annotated Checklist - Reptiles Page 1 ANNOTATED CHECKLIST AND PROVISIONAL CONSERVATION STATUS OF NAMIBIAN REPTILES MICHAEL GRIFFIN BIODIVERSITY INVENTORY MINISTRY OF ENVIRONMENT AND TOURISM PRIVATE BAG 13306 WINDHOEK NAMIBIA Annotated Checklist - Reptiles Page 2 Annotated Checklist - Reptiles Page 3 CONTENTS PAGE ABSTRACT 5 INTRODUCTION 5 METHODS AND DEFINITIONS 6 SPECIES ACCOUNTS Genus Crocodylus Nile Crocodile 11 Pelomedusa Helmeted Terrapin 11 Pelusios Hinged Terrapins 12 Geochelone Leopard Tortoise 13 Chersina Bowsprit Tortoise 14 Homopus Nama Padloper 14 Psammobates Tent Tortoises 15 Kinixys Hinged Tortoises 16 Chelonia GreenTurtle 16 Lepidochelys Olive Ridley Turtle 17 Dermochelys Leatherback Turtle 17 Trionyx African Soft-shelled Turtle 18 Afroedura Flat Geckos 19 Goggia Dwarf Leaf-toed Geckos 20 Afrogecko Marbled Leaf-toed Gecko 21 Phelsuma Namaqua Day Gecko 22 Lygodactylus Dwarf Geckos 23 Rhoptropus Namib Day Geckos 25 Chondrodactylus Giant Ground Gecko 27 Colopus Kalahari Ground Gecko 28 Palmatogecko Web-footed Geckos 28 Pachydactylus Thick-toed Geckos 29 Ptenopus Barking Geckos 39 Narudasia Festive Gecko 41 Hemidactylus Tropical House Geckos 41 Agama Ground Agamas 42 Acanthocercus Tree Agama 45 Bradypodion Dwarf Chameleons 46 Chamaeleo Chameleons 47 Acontias Legless Skinks 48 Typhlosaurus Blind Legless Skinks 48 Sepsina Burrowing Skinks 50 Scelotes Namibian Dwarf Burrowing Skink 51 Typhlacontias Western Burrowing Skinks 51 Lygosoma Sundevall’s Writhing Skink 53 Mabuya Typical Skinks 53 Panaspis Snake-eyed Skinks 60 Annotated -
Genetic Diversity and Evolution in Lactuca L. (Asteraceae)
Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis committee Promotor Prof. Dr M.E. Schranz Professor of Biosystematics Wageningen University Other members Prof. Dr P.C. Struik, Wageningen University Dr N. Kilian, Free University of Berlin, Germany Dr R. van Treuren, Wageningen University Dr M.J.W. Jeuken, Wageningen University This research was conducted under the auspices of the Graduate School of Experimental Plant Sciences. Genetic diversity and evolution in Lactuca L. (Asteraceae) from phylogeny to molecular breeding Zhen Wei Thesis submitted in fulfilment of the requirements for the degree of doctor at Wageningen University by the authority of the Rector Magnificus Prof. Dr A.P.J. Mol, in the presence of the Thesis Committee appointed by the Academic Board to be defended in public on Monday 25 January 2016 at 1.30 p.m. in the Aula. Zhen Wei Genetic diversity and evolution in Lactuca L. (Asteraceae) - from phylogeny to molecular breeding, 210 pages. PhD thesis, Wageningen University, Wageningen, NL (2016) With references, with summary in Dutch and English ISBN 978-94-6257-614-8 Contents Chapter 1 General introduction 7 Chapter 2 Phylogenetic relationships within Lactuca L. (Asteraceae), including African species, based on chloroplast DNA sequence comparisons* 31 Chapter 3 Phylogenetic analysis of Lactuca L. and closely related genera (Asteraceae), using complete chloroplast genomes and nuclear rDNA sequences 99 Chapter 4 A mixed model QTL analysis for salt tolerance in -
Berkheya Setifera DC
Alfred Maroyi et al /J. Pharm. Sci. & Res. Vol. 11(8), 2019, 2942-2948 A review of botany, medicinal uses and biological activities of Berkheya setifera DC. (Asteraceae) Alfred Maroyi Medicinal Plants and Economic Development (MPED) Research Centre, Department of Botany, University of Fort Hare, Private Bag X1314, Alice 5700, South Africa Abstract Berkheya setifera is a well-known plant species in southern Africa in traditional and folk medicine. This study is aimed at providing a critical review of the botany, biological activities and medicinal uses of B. setifera. Documented information on botany, biological activities and medicinal uses of B. setifera was collected from several online sources which included BMC, Scopus, SciFinder, Google Scholar, Science Direct, Elsevier, Pubmed and Web of Science. Additional information on the botany, biological activities and medicinal uses of B. setifera was sourced from book chapters, books, journal articles, theses and scientific publications sourced from the University of Fort Hare library. The current study showed that the leaves and roots of B. setifera are traditionally used in 60% of the countries where the species is indigenous. Berkheya setifera is used as herbal medicine for 28 human diseases which include abdominal pains, arthritis, blood circulatory problems, colds, coughs, itching skin and rash, jaundice, kidney problems, magical uses, stomach complaints, sterility and uterine disorders. Pharmacological research revealed that B. setifera extracts have antibacterial, antimalarial, anti-inflammatory, antioxidant, haemolysis, antifungal and cytotoxicity properties. Future studies should concentrate on assessing the phytochemical, pharmacological and toxicological activities of B. setifera crude extracts as well as chemical ingredients isolated from the species.