diversity Article Comparative Chloroplast Genomics in Phyllanthaceae Species Umar Rehman 1, Nighat Sultana 1,*, Abdullah 2 , Abbas Jamal 3 , Maryam Muzaffar 2,4 and Peter Poczai 5,6,* 1 Department of Biochemistry, Hazara University, Mansehra P.O. Box 21300, Pakistan;
[email protected] 2 Department of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad 45320, Pakistan;
[email protected] (A.);
[email protected] (M.M.) 3 Key Laboratory of Horticulture Plant Biology (Ministry of Education), College of Horticulture and Forestry Sciences, Huazhong Agriculture University, Wuhan 430070, China;
[email protected] 4 Alpha Genomics Private Limited, Islamabad 45710, Pakistan 5 Finnish Museum of Natural History, University of Helsinki, P.O. Box 7, FI-00014 Helsinki, Finland 6 Faculty of Biological and Environmental Sciences, University of Helsinki, P.O. Box 65, FI-00065 Helsinki, Finland * Correspondence:
[email protected] (N.S.); peter.poczai@helsinki.fi (P.P.) Abstract: Family Phyllanthaceae belongs to the eudicot order Malpighiales, and its species are herbs, shrubs, and trees that are mostly distributed in tropical regions. Here, we elucidate the molecular evo- lution of the chloroplast genome in Phyllanthaceae and identify the polymorphic loci for phylogenetic inference. We de novo assembled the chloroplast genomes of three Phyllanthaceae species, i.e., Phyl- lanthus emblica, Flueggea virosa, and Leptopus cordifolius, and compared them with six other previously reported genomes. All species comprised two inverted repeat regions (size range 23,921–27,128 bp) that separated large single-copy (83,627–89,932 bp) and small single-copy (17,424–19,441 bp) regions.