Modul: Zaštita Od Bolesti I Štetnika U Voćarstvu – Dio Zaštita Od Bolesti

Total Page:16

File Type:pdf, Size:1020Kb

Modul: Zaštita Od Bolesti I Štetnika U Voćarstvu – Dio Zaštita Od Bolesti Modul: Zaštita od bolesti i štetnika u voćarstvu – dio zaštita od bolesti Cvjetković, B. (2010.): Mikoze i pseudomikoze voćaka i vinove loze. Sveučilište u Zagrebu. Agronomski fakultet, 1-534. Jurković, D., Ćosić, J. (2003.): Zaštita vinograda i voćnjaka od uzročnika bolesti. Veleučilište u Požegi. Skripta, 1-83. Kišpatić, J (1992.): Bolesti voćaka i vinove loze. Sveučilište u Zagrebu. Agronomski fakultet, 1-292. Ćosić, J., Jurković, D., Vrandečić, K. (2006.): Praktikum iz fitopatologije. www.pfos.hr PROGNOZA POJAVE BILJNIH BOLESTI Predvidjeti vrijeme pojave i moguću jačinu neke bolesti može biti presudno za uspjeh kontrole bolesti te prije svega ekonomski učinak, određene proizvodnje. Svrha je prognoze da spriječi epidemiju bolesti (osobito onih koje se mogu suzbijati fungicidima) pravovremenim informacijama o početku, razvoju i jačini napada. Prognoza je osobito bitna za bolesti koje jako variraju u intenzitetu napada. Kod bolesti koje se redovito javljaju prognoza ima zadatak da odredi rokove i razmake tretiranja. Glavni zadatak prognoze je utvrditi rizik od pojave bolesti ili mogućnost da će se intenzitet bolesti povećati (Campbell and Madden 1990). Što definira uspješan prognozni model? Campbell and Madden (1990) izdvajaju: pouzdanost (korištenje podataka o biologiji patogena i okolišnim čimbenicima) jednostavnost važnost bolesti (bolest je važna za određenu kulturu, ali se rijetko javlja tako da potreba za tretiranjem nije dana) korisnost (prognostički model treba primijeniti kada bolest i / ili patogen može biti otkriven pouzdano) dostupnost (potrebne informacije o čimbenicima za nastanak bolesti (trokut) bi trebale biti raspoložive) višenamjenski primjenjivost (praćenje i donošenje odluka za više bolesti i štetnika treba biti na raspolaganju) isplativosti (prognostički sustav bi trebao biti pristupačne cijene u odnosu na ostale mjere zaštite koje se poduzimaju) Prognoza je osobito bitna u voćarstvu zbog smanjenja broja prskanja. Za prognozu potrebno je poznavati: biologiju parazita: koje spore parazit stvara, kojim sporama se širi u vegetaciji, a koje omogućuju održavanje pod nepovoljnim uvjetima, kada nastaju infekcije, kroz koje organe dolazi do zaraze, koji su minimalni, a koji optimalni uvjeti za razvoj parazita (za sporulaciju, infekciju, klijanje konidija) i dr. uvjete pod kojima nastaju zaraze Treba pratiti (i bilježiti) klimatske čimbenike (temperatura - najčešće srednja dnevna temperatura, ali i druge kada to metoda zahtjeva, količina oborina, relativna vlažnost zraka, rosa, trajanje sijanja sunca, jačina i smjer kretanja zračnih struja i dr.). Poznavanje jačine zaraženosti ili kontaminacije sjemena, lukovica, gomolja... kontinuirani obilasci i pregledi nasada ili polja (konfiguracija terena, mikroklima) poznavanja osjetljivosti sorata ili hibrida (fenofaza razvoja biljke) Prognoza se nekada služi indirektnim metodama, na pr. kada su u pitanju virusne zaraze prati se pojava vektora (vektori su prenosioci virusa), najčešće su to lisne uši. Intenzitet pojave bolesti u jednoj godini ponekada može biti indikator za prognozu jačine bolesti u drugoj godini. ANTIFUZIKLADIJSKA SLUŽBA Ova služba predviđa pojavu čađave krstavosti (Fusicladium dendriticum - nespolni stadij gljive; Venturia inaequalis - spolni stadij gljive), bolesti koja se svake godine javlja u nasadu jabuka (i krušaka). Venturia inaequalis Carstvo:Fungi, Pododjel:Ascomycota, Razred: Dothideomycetes, Red:Pleosporales, Porodica: Venturiaceae, Rod: Venturia -uzročnik krastavosti jabuke ili fuzikladija (Fusicladium dendriticum) - napada najčešće list i plod, a znatno rjeđe cvijet i mladice - najvažnija i najštetnija bolest Na listovima se od proljeća do jeseni uočavaju maslinasto zelene pjege i to pretežito na gornjoj strani lista (oko 1 cm). Pjege se mogu spajati, a list je često deformiran što za posljedicu ima slabiju asimilaciju, jaču transpiraciju i izvor zaraze za plodove. U slučaju velikog broja pjega list se osuši i otpadne. Pjege rijetko nalazimo na naličju – dlakavost lišća. Na zarazu su osjetljiviji mladi listovi. Najjaču zarazu nalazimo u unutrašnjosti krošnje. Što je voćnjak bujniji i gušćeg sklopa to su razlike u zaraženosti unutrašnjosti krošnje i rubova manje. Gljiva nije tipični endoparazit hife – subkutikularno. Rub pjega nije oštro odjeljen od zdravog dijela, nego postepeno prelazi u nezaraženi dio plojke. Štetnost napada na lišće očituje se u smanjenoj asimilaciji, a takovo lišće i jače transpirira (takav gubitak vode posebice dolazi do izražaja u vrućim ljetnim mjesecima), lišće postepeno žuti i otpada još tijekom vegetacije, i na kraju, napadnuto lišće je izvor zaraze za plodove. Na plodovima se takđer javljaju maslinasto-zelene pjege veličine obično 2-6 mm, ali mogu biti i veće (1-2 cm). www.apsnet.org http://botit.botany.wisc.edu/ Pjege su površinske (hife su ograničene na subkutikularni rast). Jako zaraženi plodovi su deformirani, sitniji i otpadaju. Stariji plodovi, čak i ako su jače zaraženi, u pravilu ne otpadaju, već se unutar pjege raspucavaju. Ispod zaraženog staničja dolazi do tvorbe plutastog staničja (aktivna obrambena reakcija) koje izolira zaraženo tkivo od zdravog. Posljedice napada plodova su: - gubitak plodova (otpadaju, sitni su i deformirani) - kroz pukotine ulaze drugi paraziti (Monilia) - loša kvaliteta (niža tržišna cijena) www.plantwise.org Napad fuzikladija na cvjetovima nije česta pojava, ali se može naći. Na laticama i lapovima - maslinastozelene mrlje. Direktnih šteta nema. www.viette.com - Napad na kori mladica također kod jabuka nije česta pojava (krastava mjesta s plitko raspucanom korom). U tim krastama prezimi micelij, te u proljeće kraste poprimaju maslinasto-zelenu boju zbog formiranja konidija. Biologija Zaraženo lišće otpada tijekom cijele vegetacije, a posebice u jesen. Tada gljiva prelazi na saprofitski način života, a micelij prelazi iz subkutikularnog staničja u mezofil gdje se proširi. U proljeće se nakon spolnog razvoja javljaju se periteciji s askusima i askosporama, a vratovi plodišta pojavljuju su na licu lista u ožujku i travnju. Heterotalična vrsta. botit.botany.wisc.edu Askospore se oslobađaju aktivno i za to je potrebna voda (kiša). Jak razvoj parazita treba očekivati u godinama s čestim kišama u travnju i svibnju uz relativno toplo vrijeme. Primarna zaraza - askospore ili konidije koje se razvijaju na kori mladice. Askospore kliju u micelij na listovima, dolazi do perforiranja kutikule i micelij se smjesti subkutikularno. Nakon inkubacije nastaju mrlje, a na njima konidije, koje se šire kišom i omogućuju sekundarnu infekciju. Suzbijanje 1. kulturalne mjere (pravilan izbor tla, izbor sorata, razmak između redova, prorjeđivanje krošnje, njega voćaka, pravilna gnojidba, suzbijanje korova) kemijska zaštita (sumporni fungicidi - nisu najbolji, ali djeluju i na pepelnicu; bakarni fungicidi - ne preporučuju se zbog fitotoksičnosti iako imaju dobro djelovanje na parazita; Glasilo biljne zaštite. Koda nas se za prognozu koriste aparati CDA-AGRA- Čakovec i Metos (Weiz- Austrija) bazarini na Millsovoj tablici. wiki.bugwood.org Tijekom godina iskušane su različite metode određivanja roka za provođenje prvog prskanja. Temelj svih metoda je: utvrđivanje dozrelosti peritecija (to su plodišta parazita koja nastaju nakon prezimljenja zaraženog lišća iz prethodne vegetacije) izbacivanje i let askospora (askospore su osnovni izvor primarnih zaraza) Za uspješno suzbijanje fuzikladija potrebno je pratiti oborine početak i trajanje vlaženja lista temperaturu za vrijeme vlaženja lista relativnu vlagu zraka let spora Početak kiše u proljeće uvjetuje let spora, a dovoljno je već 0.2 mm kiše za pucanje askusa i let spora. Kiša zatim uvjetuje trajanje vlažnosti lista. Može isprati i fungicide. Relativna vlaga zraka je važna jer spora može ostati klijava bez vode duže što je viša relativna vlaga zraka. 7 sati pri 70 % r.v.z, 8 sati pri 80 % r.v.z., te duže vrijeme kod 90 % r.v.z. Praćenje leta zimskih spora je osnovni podatak, jer one svojim klijanjem prouzrokuju primarne infekcije. Askospore se iz askusa oslobadaju silovito, bivaju izbačene pod tlakom i prepuštene su zračnim strujanjima. Askospore mogu uzrokovat zarazu u određenom rasponu temperatura i u ovisnosti o dostupnosti vode potrebne za klijanje ovih spora. Konidije nastaju nakon zaraze biljnih organa raznose se po nasadu uglavnom vodom (kišnim kapima). Inkubacijska krivulja po Millsu služi prvenstveno radi predviđanja mogućnosti i jačine zaraze jabuke askosporama i konidijama gljive V. inaequalis. Pretpostavlja se da su tijekom vegetacije u voćnjaku uvijek prisutne konidije gljive uzročnika krastavosti. U nekim velikim nasadima jabuka danas su postavljeni aparati koji automatski hvataju askospore, te na temelju kompjutorskih modela i unešenih podataka sami preračunavaju elemente potrebne za određivanje roka prskanja. U manjim nasadima, ali i pojedinim velikim voćnjacima prognoza se radi na temelju iskustva, poznavanja biologije i ekologije parazita, te praćenju podataka o oborinama i temperaturama. Nakon što se utvrdi da su periteciji u otpalom lišću počeli oslobađati askospore, na temelju kretanja dnevnih temperatura i duljine vlaženja lista utvrđuje se rizik od zaraze. Let spora može se odrediti na temelju zbroja srednjih dnevnih temperatura od kalendraskog početka godine (Creemers i sur., 1996.) Zbroj srednjih dnevnih Let spora u % temperatura u °C 262-270 50 557-571 95 938-887 Završetak leta Millsova inkubacijska krivulja Predviđa jačina zaraze krastavošću. Prisutnost zrelih askospora neophodno je pratiti
Recommended publications
  • Preliminary Classification of Leotiomycetes
    Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades.
    [Show full text]
  • Diplocarpon Rosae) Genetic Diversity in Eastern North America Using Amplified Fragment Length Polymorphism and Implications for Resistance Screening
    J. AMER.SOC.HORT.SCI. 132(4):534–540. 2007. Distribution of Rose Black Spot (Diplocarpon rosae) Genetic Diversity in Eastern North America Using Amplified Fragment Length Polymorphism and Implications for Resistance Screening Vance M. Whitaker and Stan C. Hokanson1 Department of Horticultural Science, University of Minnesota, 258 Alderman Hall, 1970 Folwell Avenue, St. Paul, MN 55108 James Bradeen Department of Plant Pathology, University of Minnesota, 495 Borlaug Hall, 1991 Upper Buford Circle, St. Paul, MN 55108 ADDITIONAL INDEX WORDS. AMOVA, dendrogram, fungal isolate, Jaccard’s coefficient, pathogenic race, principal component analysis ABSTRACT. Black spot, incited by the fungus Diplocarpon rosae Wolf, is the most significant disease problem of landscape roses (Rosa hybrida L.) worldwide. The documented presence of pathogenic races necessitates that rose breeders screen germplasm with isolates that represent the range of D. rosae diversity for their target region. The objectives of this study were to characterize the genetic diversity of single-spore isolates from eastern North America and to examine their distribution according to geographic origin, host of origin, and race. Fifty isolates of D. rosae were collected from roses representing multiple horticultural classes in disparate locations across eastern North America and analyzed by amplified fragment length polymorphism. Considerable marker diversity among isolates was discovered, although phenetic and cladistic analyses revealed no significant clustering according to host of origin or race. Some clustering within collection locations suggested short-distance dispersal through asexual conidia. Lack of clustering resulting from geographic origin was consistent with movement of D. rosae on vegetatively propagated roses. Results suggest that field screening for black spot resistance in multiple locations may not be necessary; however, controlled inoculations with single-spore isolates representing known races is desirable as a result of the inherent limitations of field screening.
    [Show full text]
  • Light Leaf Spot and White Leaf Spot of Brassicaceae in Washington State
    LIGHT LEAF SPOT AND WHITE LEAF SPOT OF BRASSICACEAE IN WASHINGTON STATE By SHANNON MARIE CARMODY A thesis submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE IN PLANT PATHOLOGY WASHINGTON STATE UNIVERSITY Department of Plant Pathology JULY 2017 © Copyright by SHANNON MARIE CARMODY, 2017 All Rights Reserved To the Faculty of Washington State University: The members of the Committee appointed to examine the thesis of SHANNON MARIE CARMODY find it satisfactory and recommend that it be accepted. Lindsey J. du Toit, Ph.D., Chair Lori M. Carris, Ph.D. Timothy C. Paulitz, Ph.D. Cynthia M. Ocamb, Ph.D. ii ACKNOWLEDGMENT I would like to thank my major advisor Dr. Lindsey du Toit for her tireless mentorship, passion, and enthusiasm. I wish to thanks my committee members Dr. Lori Carris, Dr. Cynthia Ocamb, and Dr. Timothy Paulitz who welcomed me into their labs in Pullman, WA and when visiting in Corvallis, OR. This work would not have been possible without the financial support of the Clif Bar Family Foundation Seed Matters Initiative and the Western Sustainable Agriculture Research and Education Fellowship. Thank you to all of the faculty, students, and staff of WSU Mount Vernon and WSU Pullman who have generously shared time, support, knowledge, tulips, equipment, and humor. As was noted in my hospital chart, you all made sure I was “emotionally, financially, and botanically supported” which is more than I could have ever asked for. None of my research would have been possible without the members of the Vegetable Seed Pathology Lab.
    [Show full text]
  • A Multigene Phylogeny Toward a New Phylogenetic Classification of Leotiomycetes Peter R
    Johnston et al. IMA Fungus (2019) 10:1 https://doi.org/10.1186/s43008-019-0002-x IMA Fungus RESEARCH Open Access A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes Peter R. Johnston1* , Luis Quijada2, Christopher A. Smith1, Hans-Otto Baral3, Tsuyoshi Hosoya4, Christiane Baschien5, Kadri Pärtel6, Wen-Ying Zhuang7, Danny Haelewaters2,8, Duckchul Park1, Steffen Carl5, Francesc López-Giráldez9, Zheng Wang10 and Jeffrey P. Townsend10 Abstract Fungi in the class Leotiomycetes are ecologically diverse, including mycorrhizas, endophytes of roots and leaves, plant pathogens, aquatic and aero-aquatic hyphomycetes, mammalian pathogens, and saprobes. These fungi are commonly detected in cultures from diseased tissue and from environmental DNA extracts. The identification of specimens from such character-poor samples increasingly relies on DNA sequencing. However, the current classification of Leotiomycetes is still largely based on morphologically defined taxa, especially at higher taxonomic levels. Consequently, the formal Leotiomycetes classification is frequently poorly congruent with the relationships suggested by DNA sequencing studies. Previous class-wide phylogenies of Leotiomycetes have been based on ribosomal DNA markers, with most of the published multi-gene studies being focussed on particular genera or families. In this paper we collate data available from specimens representing both sexual and asexual morphs from across the genetic breadth of the class, with a focus on generic type species, to present a phylogeny based on up to 15 concatenated genes across 279 specimens. Included in the dataset are genes that were extracted from 72 of the genomes available for the class, including 10 new genomes released with this study. To test the statistical support for the deepest branches in the phylogeny, an additional phylogeny based on 3156 genes from 51 selected genomes is also presented.
    [Show full text]
  • Recent Progress in Enhancing Fungal Disease Resistance in Ornamental Plants
    International Journal of Molecular Sciences Review Recent Progress in Enhancing Fungal Disease Resistance in Ornamental Plants Manjulatha Mekapogu 1, Jae-A Jung 1,* , Oh-Keun Kwon 1, Myung-Suk Ahn 1, Hyun-Young Song 1 and Seonghoe Jang 2,* 1 Floriculture Research Division, National Institute of Horticultural and Herbal Science, Rural Development Administration, Wanju 55365, Korea; [email protected] (M.M.); [email protected] (O.-K.K.); [email protected] (M.-S.A.); [email protected] (H.-Y.S.) 2 World Vegetable Center Korea Office (WKO), Wanju 55365, Korea * Correspondence: [email protected] (J.-A.J.); [email protected] (S.J.) Abstract: Fungal diseases pose a major threat to ornamental plants, with an increasing percentage of pathogen-driven host losses. In ornamental plants, management of the majority of fungal diseases primarily depends upon chemical control methods that are often non-specific. Host basal resistance, which is deficient in many ornamental plants, plays a key role in combating diseases. Despite their economic importance, conventional and molecular breeding approaches in ornamental plants to facilitate disease resistance are lagging, and this is predominantly due to their complex genomes, limited availability of gene pools, and degree of heterozygosity. Although genetic engineering in ornamental plants offers feasible methods to overcome the intrinsic barriers of classical breeding, achievements have mainly been reported only in regard to the modification of floral attributes in ornamentals. The unavailability of transformation protocols and candidate gene resources for several ornamental crops presents an obstacle for tackling the functional studies on disease resistance. Re- cently, multiomics technologies, in combination with genome editing tools, have provided shortcuts Citation: Mekapogu, M.; Jung, J.-A.; to examine the molecular and genetic regulatory mechanisms underlying fungal disease resistance, Kwon, O.-K.; Ahn, M.-S.; Song, H.-Y.; Jang, S.
    [Show full text]
  • Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
    Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system.
    [Show full text]
  • Foliar Pathogenic Fungi: Growing Threats to Global Food Security and Ecosystem Health
    REVIEW ARTICLE Foliar pathogenic fungi: growing threats to global food security and ecosystem health D. Udayanga, S.D. Miriyagalla, I.S. Herath, L.A. Castlebury, H.S. Ferdinandez and D.S. Manamgoda Highlights • Foliar pathogens represent a diverse assemblage of species in the fungal kingdom. • Global climate change, increasing international trade of plant material, and poor phytosanitary practices lead to the spread of destructive diseases. • Non-indigenous, invasive foliar pathogens cause threats to food security and ecosystem health. • Therefore, emerging foliar diseases should not be ignored, especially when encountered on the new hosts and localities. • Understanding evolutionary relationships, diversity, and biology of organisms are vital to avert disease epidemics. Ceylon Journal of Science 49 (Special Issue) 2020: 337-353 DOI: http://doi.org/10.4038/cjs.v49i5.7801 REVIEW ARTICLE Foliar pathogenic fungi: growing threats to global food security and ecosystem health D. Udayanga1,*, S.D. Miriyagalla1, I.S. Herath1, L.A. Castlebury2, H. S. Ferdinandez3 and D.S. Manamgoda3 1Department of Biosystems Technology, Faculty of Technology, University of Sri Jayewardenepura, Pitipana, Homagama, 10200, Sri Lanka. 2Mycology and Nematology Genetic Diversity and Biology Laboratory, United States Department of Agriculture Agricultural Research Service, Beltsville, MD 20705, USA. 3Department of Botany, Faculty of Applied Sciences, University of Sri Jayewardenepura, Gangodawila, Nugegoda, 10250, Sri Lanka. Received: 06/09/2020 ; Accepted: 16/10/2020 Abstract: Globally, foliar pathogenic fungi cause serious losses reproduction totally depend on the host, while others are of annual and perennial crops, ornamentals, landscape plants opportunistic species or secondary invaders (Chaure et and forest trees. Plant pathogens that infect foliage are a diverse al., 2000).
    [Show full text]
  • View a Copy of This Licence, Visit
    Udayanga et al. IMA Fungus (2021) 12:15 https://doi.org/10.1186/s43008-021-00069-9 IMA Fungus RESEARCH Open Access Molecular reassessment of diaporthalean fungi associated with strawberry, including the leaf blight fungus, Paraphomopsis obscurans gen. et comb. nov. (Melanconiellaceae) Dhanushka Udayanga1* , Shaneya D. Miriyagalla1, Dimuthu S. Manamgoda2, Kim S. Lewers3, Alain Gardiennet4 and Lisa A. Castlebury5 ABSTRACT Phytopathogenic fungi in the order Diaporthales (Sordariomycetes) cause diseases on numerous economically important crops worldwide. In this study, we reassessed the diaporthalean species associated with prominent diseases of strawberry, namely leaf blight, leaf blotch, root rot and petiole blight, based on molecular data and morphological characters using fresh and herbarium collections. Combined analyses of four nuclear loci, 28S ribosomal DNA/large subunit rDNA (LSU), ribosomal internal transcribed spacers 1 and 2 with 5.8S ribosomal DNA (ITS), partial sequences of second largest subunit of RNA polymerase II (RPB2) and translation elongation factor 1-α (TEF1), were used to reconstruct a phylogeny for these pathogens. Results confirmed that the leaf blight pathogen formerly known as Phomopsis obscurans belongs in the family Melanconiellaceae and not with Diaporthe (syn. Phomopsis) or any other known genus in the order. A new genus Paraphomopsis is introduced herein with a new combination, Paraphomopsis obscurans, to accommodate the leaf blight fungus. Gnomoniopsis fragariae comb. nov. (Gnomoniaceae), is introduced to accommodate Gnomoniopsis fructicola, the cause of leaf blotch of strawberry. Both of the fungi causing leaf blight and leaf blotch were epitypified. Fresh collections and new molecular data were incorporated for Paragnomonia fragariae (Sydowiellaceae), which causes petiole blight and root rot of strawberry and is distinct from the above taxa.
    [Show full text]
  • Evolution of Helotialean Fungi (Leotiomycetes, Pezizomycotina): a Nuclear Rdna Phylogeny
    Molecular Phylogenetics and Evolution 41 (2006) 295–312 www.elsevier.com/locate/ympev Evolution of helotialean fungi (Leotiomycetes, Pezizomycotina): A nuclear rDNA phylogeny Zheng Wang a,¤, Manfred Binder a, Conrad L. Schoch b, Peter R. Johnston c, Joseph W. Spatafora b, David S. Hibbett a a Department of Biology, Clark University, 950 Main Street, Worcester, MA 01610, USA b Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA c Herbarium PDD, Landcare Research, Private bag 92170, Auckland, New Zealand Received 5 December 2005; revised 21 April 2006; accepted 24 May 2006 Available online 3 June 2006 Abstract The highly divergent characters of morphology, ecology, and biology in the Helotiales make it one of the most problematic groups in traditional classiWcation and molecular phylogeny. Sequences of three rDNA regions, SSU, LSU, and 5.8S rDNA, were generated for 50 helotialean fungi, representing 11 out of 13 families in the current classiWcation. Data sets with diVerent compositions were assembled, and parsimony and Bayesian analyses were performed. The phylogenetic distribution of lifestyle and ecological factors was assessed. Plant endophytism is distributed across multiple clades in the Leotiomycetes. Our results suggest that (1) the inclusion of LSU rDNA and a wider taxon sampling greatly improves resolution of the Helotiales phylogeny, however, the usefulness of rDNA in resolving the deep relationships within the Leotiomycetes is limited; (2) a new class Geoglossomycetes, including Geoglossum, Trichoglossum, and Sarcoleo- tia, is the basal lineage of the Leotiomyceta; (3) the Leotiomycetes, including the Helotiales, Erysiphales, Cyttariales, Rhytismatales, and Myxotrichaceae, is monophyletic; and (4) nine clades can be recognized within the Helotiales.
    [Show full text]
  • Drivers of Fungal Community Composition and Function In
    DRIVERS OF FUNGAL COMMUNITY COMPOSITION AND FUNCTION IN TEMPERATE FORESTS A dissertation submitted to Kent State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy By Matthew D. Gacura December 2018 © Copyright All rights reserved Except for previously published materials i Dissertation written by Matthew David Gacura B.S., Youngstown State University, 2007 M.S., Youngstown State University, 2009 Ph.D., Kent State University, 2018 Approved by Christopher B. Blackwood, Ph.D. , Chair, Doctoral Dissertation Committee Mark W. Kershner, Ph.D. , Members, Doctoral Dissertation Committee Xiaozhen Mou, Ph.D. Mandy J. Munro-Stasiuk, Ph.D. Abdul Shakoor, Ph.D. Accepted by Laura G. Leff, Ph.D. , Chair, Department of Biological Sciences James L. Blank, Ph.D. , Dean, College of Arts and Sciences ii TABLE OF CONTENTS TABLE OF CONTENTS…………………………………………….…………………………...iii LIST OF FIGURES…………………………….………………….………………………………v LIST OF TABLES……………….………………………………………………………………..x ACKNOWLEDGEMENTS……………………………………………………………………...xii I. CHAPTER 1: INTRODUCTION………………………..……………………………1 REFERENCES……………………..………………………………………………..20 II. CHAPTER 2: NICHE VS NEUTRAL: FACTORS INFLUENCING THE STRUCTURE OF SAPROTROPHIC FUNGAL COMMUNITIES AT FINE AND LARGE SPATIAL SCALES……………...…………………………………………35 ABSTRACT………………………………………………………………………….35 INTRODUCTION…………………..……………………………………………….36 MATERIALS AND METHODS…………...……………………..…………………40 RESULTS……………………..……………………………………………………..47 DISCUSSION……………..……………………………………………………..…..51 ACKNOWLEDGEMENTS………………………………………………………….60
    [Show full text]
  • Monitoring Spore Dispersal and Early Infections of Diplocarpon Coronariae Causing Apple Blotch Using Selected Spore Traps and A
    bioRxiv preprint doi: https://doi.org/10.1101/2021.07.25.453640; this version posted July 25, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Boutry et al. 1 Monitoring spore dispersal and early infections of Diplocarpon coronariae causing 2 apple blotch using selected spore traps and a new qPCR method 3 1 2 2 1 1 4 Clémence Boutry , Anne Bohr , Sascha Buchleither , Mathias Ludwig , Thomas Oberhänsli , 1 1 1 5 Lucius Tamm , Hans-Jakob Schärer *, Pascale Flury * 6 7 1 Plant Pathology, Research Institute of Organic Agriculture FiBL, Ackerstr. 113, 5070 Frick, 8 Switzerland 9 2 Competence center for fruit crops at the Lake of Constance (KOB), Schuhmacherhof 6, 88213 10 Ravensburg, Germany 11 * Corresponding authors, equal contribution: H.-J. Schärer, P. Flury 12 E-mail: [email protected]; [email protected] 13 14 Running title: Diplocarpon coronariae spore flight 15 16 Keywords: TaqMan qPCR, Marssonina coronaria, Diplocarpon mali, 17 18 19 Funding: Interreg V Program Number ABH003. 20 21 22 bioRxiv preprint doi: https://doi.org/10.1101/2021.07.25.453640; this version posted July 25, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Boutry et al. 23 Abstract 24 Apple blotch (AB) is a major disease of apples in Asia and recently also emerging in Europe 25 and the USA. It is caused by the fungus Diplocarpon coronariae (Dc) (formerly: Marssonina 26 coronaria; teleomorph: Diplocarpon mali) and leads to severe defoliation of apple trees in late 27 summer and thus to reduced yield and fruit quality.
    [Show full text]
  • Black Spot Fungi on Rosaceous Hosts: Diplocarpon Represents a Unique Evolutionary Lineage Within Leotiomycetes
    Black spot fungi on rosaceous hosts: Diplocarpon represents a unique evolutionary lineage within Leotiomycetes POSTER B56 Dhanushka Udayanga1, Lisa A. Castlebury2 1Department of Biosystems Technology, Faculty of Technology, University of Sri Jayewardenepura, Nugegoda, Sri Lanka. 2Mycology and Nematology Genetic Diversity and Biology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, USA Abstract The black spot diseases of rosaceous hosts are primarily caused by the species of Diplocarpon, formerly known as Marssonina. Species of Diplocarpon cause severe diseases on several economically important hosts, including garden roses, apple, pear, and strawberry. However, the precise phylogenetic placement of these species is not well understood. In the present study, we used fresh collections and herbarium specimens to infer molecular phylogenetic placement and to clarify the taxonomy and nomenclature of this poorly known group of phytopathogenic fungi. The molecular phylogeny based on 28S and ITS rDNA sequences and including the type species of the genus, Diplocarpon rosae, revealed that the genus represents a unique evolutionary lineage within the Helotiales. Two additional species, Diplocarpon fragariae, causing leaf scorch disease of strawberry, and Diplocarpon coronariae, causing black spot of apple and pear, grouped with the type species and could be distinguished using sequence data. In addition, type specimens of other species in the genus were studied and distinguished based on morphological characters. These species of phytopathogenic fungi were found to grow poorly on artificial media thus limited amounts of molecular data and cultures were available in public databases. However, this study contributes towards a stable platform for the taxonomy of obscure genera of phytopathogenic fungi.
    [Show full text]