The Chain of Being and a New Taxonomy in the 1700S, Charles
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Basal Body Structure and Composition in the Apicomplexans Toxoplasma and Plasmodium Maria E
Francia et al. Cilia (2016) 5:3 DOI 10.1186/s13630-016-0025-5 Cilia REVIEW Open Access Basal body structure and composition in the apicomplexans Toxoplasma and Plasmodium Maria E. Francia1* , Jean‑Francois Dubremetz2 and Naomi S. Morrissette3 Abstract The phylum Apicomplexa encompasses numerous important human and animal disease-causing parasites, includ‑ ing the Plasmodium species, and Toxoplasma gondii, causative agents of malaria and toxoplasmosis, respectively. Apicomplexans proliferate by asexual replication and can also undergo sexual recombination. Most life cycle stages of the parasite lack flagella; these structures only appear on male gametes. Although male gametes (microgametes) assemble a typical 9 2 axoneme, the structure of the templating basal body is poorly defined. Moreover, the rela‑ tionship between asexual+ stage centrioles and microgamete basal bodies remains unclear. While asexual stages of Plasmodium lack defined centriole structures, the asexual stages of Toxoplasma and closely related coccidian api‑ complexans contain centrioles that consist of nine singlet microtubules and a central tubule. There are relatively few ultra-structural images of Toxoplasma microgametes, which only develop in cat intestinal epithelium. Only a subset of these include sections through the basal body: to date, none have unambiguously captured organization of the basal body structure. Moreover, it is unclear whether this basal body is derived from pre-existing asexual stage centrioles or is synthesized de novo. Basal bodies in Plasmodium microgametes are thought to be synthesized de novo, and their assembly remains ill-defined. Apicomplexan genomes harbor genes encoding δ- and ε-tubulin homologs, potentially enabling these parasites to assemble a typical triplet basal body structure. -
The Scientist from a Flourishing Sex-Life to Modern DNA Technology
The Scientist From a Flourishing Sex-life to Modern DNA Technology Linnaeus the Scientist ll of a sudden you are standing there, in the bo- tanic garden that is to be Linnaeus’s base for a whole lifetime of scientific achievements. It is a beautiful spring day in Uppsala, the sun’s rays warm your heart as cheerfully as in your own 21st century. The hus- tle and bustle of the town around you break into the cen- trally located garden. Carriage wheels rattle over the cob- blestones, horses neigh, hens cackle from the house yards. The acrid smell of manure and privies bears witness to a town atmosphere very different from your own. You cast a glance at what is growing in the garden. The beds do not look particularly well kept. In fact, the whole garden gives a somewhat dilapidated impression. Suddenly, in the distance, you see a young man squat- A ting down by one of the beds. He is looking with great concentration at a small flower, examining it closely through a magnifying glass. When he lifts his head for a moment and ponders, you recognise him at once. It is Carl von Linné, or Carl Linnaeus as he was originally called. He looks very young, just over 20 years old. His pale cheeks tell you that it has been a harsh winter. His first year as a university student at Uppsala has been marked by a lack of money for both food and clothes as well as for wood to warm his rented room. 26 linnaean lessons • www.bioresurs.uu.se © 2007 Swedish Centre for School Biology and Biotechnology, Uppsala University, Sweden. -
Of Dahlia Myths.Pub
Cavanilles’ detailed illustrations established the dahlia in the botanical taxonomy In 1796, the third volume of “Icones” introduced two more dahlia species, named D. coccinea and D. rosea. They also were initially thought to be sunflowers and had been brought to Spain as part of the Alejandro Malaspina/Luis Neé expedition. More than 600 drawings brought the plant collection to light. Cavanilles, whose extensive correspondence included many of Europe’s leading botanists, began to develop a following far greater than his title of “sacerdote” (priest, in French Abbé) ever would have offered. The A. J. Cavanilles archives of the present‐day Royal Botanical Garden hold the botanist’s sizable oeu‐ vre, along with moren tha 1,300 letters, many dissertations, studies, and drawings. In time, Cavanilles achieved another goal: in 1801, he was finally appointed professor and director of the garden. Regrettably, he died in Madrid on May 10, 1804. The Cavanillesia, a tree from Central America, was later named for this famousMaterial Spanish scientist. ANDERS DAHL The lives of Dahl and his Spanish ‘godfather’ could not have been any more different. Born March 17,1751, in Varnhem town (Västergötland), this Swedish botanist struggled with health and financial hardship throughout his short life. While attending school in Skara, he and several teenage friends with scientific bent founded the “Swedish Topographic Society of Skara” and sought to catalogue the natural world of their community. With his preacher father’s support, the young Dahl enrolled on April 3, 1770, at Uppsala University in medicine, and he soon became one of Carl Linnaeus’ students. -
Supplementary Table S2: New Taxonomic Assignment of Sequences of Basal Fungal Lineages
Supplementary Table S2: New taxonomic assignment of sequences of basal fungal lineages. Fungal sequences were subjected to BLAST-N analysis and checked for their taxonomic placement in the eukaryotic guide-tree of the SILVA release 111. Sequences were classified depending on combined results from the methods mentioned above as well as literature searches. Accession Name New classification Clustering of the sequence in the Best BLAST-N hit number based on combined results eukaryotic guide tree of SILVA Name Accession number E.value Identity AB191431 Uncultured fungus Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB191432 Unculltured eukaryote Blastocladiomycota Blastocladiomycota Rhizophlyctis rosea NG_017175.1 0.0 91 AB252775 Uncultured eukaryote Chytridiomycota Chytridiomycota Blastocladiales sp. EF565163.1 0.0 91 AB252776 Uncultured eukaryote Fungi Nucletmycea_Fonticula Rhizophydium sp. AF164270.2 0.0 87 AB252777 Uncultured eukaryote Chytridiomycota Chytridiomycota Basidiobolus haptosporus AF113413.1 0.0 91 AB275063 Uncultured fungus Chytridiomycota Chytridiomycota Catenomyces sp. AY635830.1 0.0 90 AB275064 Uncultured fungus Chytridiomycota Chytridiomycota Endogone lactiflua DQ536471.1 0.0 91 AB433328 Nuclearia thermophila Nuclearia Nucletmycea_Nuclearia Nuclearia thermophila AB433328.1 0.0 100 AB468592 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 90 AB468593 Uncultured fungus Basal clone group I Chytridiomycota Physoderma dulichii DQ536472.1 0.0 91 AB468594 Uncultured -
A Web Tool for Hydrogenase Classification and Analysis Dan Søndergaard1, Christian N
www.nature.com/scientificreports OPEN HydDB: A web tool for hydrogenase classification and analysis Dan Søndergaard1, Christian N. S. Pedersen1 & Chris Greening2,3 H2 metabolism is proposed to be the most ancient and diverse mechanism of energy-conservation. The Received: 24 June 2016 metalloenzymes mediating this metabolism, hydrogenases, are encoded by over 60 microbial phyla Accepted: 09 September 2016 and are present in all major ecosystems. We developed a classification system and web tool, HydDB, Published: 27 September 2016 for the structural and functional analysis of these enzymes. We show that hydrogenase function can be predicted by primary sequence alone using an expanded classification scheme (comprising 29 [NiFe], 8 [FeFe], and 1 [Fe] hydrogenase classes) that defines 11 new classes with distinct biological functions. Using this scheme, we built a web tool that rapidly and reliably classifies hydrogenase primary sequences using a combination of k-nearest neighbors’ algorithms and CDD referencing. Demonstrating its capacity, the tool reliably predicted hydrogenase content and function in 12 newly-sequenced bacteria, archaea, and eukaryotes. HydDB provides the capacity to browse the amino acid sequences of 3248 annotated hydrogenase catalytic subunits and also contains a detailed repository of physiological, biochemical, and structural information about the 38 hydrogenase classes defined here. The database and classifier are freely and publicly available at http://services.birc.au.dk/hyddb/ Microorganisms conserve energy by metabolizing H2. Oxidation of this high-energy fuel yields electrons that can be used for respiration and carbon-fixation. This diffusible gas is also produced in diverse fermentation and 1 anaerobic respiratory processes . H2 metabolism contributes to the growth and survival of microorganisms across the three domains of life, including chemotrophs and phototrophs, lithotrophs and heterotrophs, aerobes and 1,2 anaerobes, mesophiles and extremophiles alike . -
Instr Uct Or's Guide Science
Scientists Of The Past SCIENCE Lesson Objectives • Students will compare and contrast how the rules of society restricted the progress of science in the past. • Students will list several famous scientists from history. Activities Checklist In this lesson, the student will • Watch the instructional video about how the rules of society restricted the progress of science in the past and the scientists who, over time, were able to break away from these restrictions • Interact with My Book and learn about how the rules of society restricted the progress of science in the past • Complete the crossword puzzle, in the Science Activities Workbook, by determining the scientist who made each cited discovery • Complete all learning activities assessing understanding of the sequence of scientifi c events and discoveries Video Summary Students are given a modern-day scenario of reading something aloud in front of the classroom to better understand the stress scientists felt during the sixteenth and seventeenth centuries, when they were presenting new scientifi c theories to society. Scientists of the past were not always respected. Sometimes publicly voicing their scientifi c opinions could result in jail, exile, or even death. Religion determined what could or could not be accepted as explanations and discoveries. When a scientist would come up with a new explanation for why something occurred in nature, he or she would often have to argue the claim against the church -- and the church always won. After many, many years, the scientifi c community was able to break away from the church, resulting in numerous scientifi c endeavors. Some of the most famous scientists include Anton van Leeuwenhoek (improved the microscope), Carl Linnaeus (developed the classifi cation of life on Earth), Charles Darwin (developed the Theory of Evolution by Natural Selection), and Albert Einstein (worked within mathematics, GUIDE INSTRUCTOR’S physics, and astronomy). -
The Voc and Swedish Natural History. the Transmission of Scientific Knowledge in the Eighteenth Century
THE VOC AND SWEDISH NATURAL HISTORY. THE TRANSMISSION OF SCIENTIFIC KNOWLEDGE IN THE EIGHTEENTH CENTURY Christina Skott In the later part of the eighteenth century Sweden held a place as one of the foremost nations in the European world of science. This was mainly due to the fame of Carl Linnaeus (1707–78, in 1762 enno- bled von Linné), whose ground breaking new system for classifying the natural world created a uniform system of scientific nomenclature that would be adopted by scientists all over Europe by the end of the century. Linnaeus had first proposed his new method of classifying plants in the slim volume Systema Naturae, published in 1735, while he was working and studying in Holland. There, he could for the first time himself examine the flora of the Indies: living plants brought in and cultivated in Dutch gardens and greenhouses as well as exotic her- baria collected by employees of the VOC. After returning to his native Sweden in 1737 Linnaeus would not leave his native country again. But, throughout his lifetime, Systema Naturae would appear in numerous augmented editions, each one describing new East Indian plants and animals. The Linnean project of mapping the natural world was driven by a strong patriotic ethos, and Linneaus would rely heavily on Swed- ish scientists and amateur collectors employed by the Swedish East India Company; but the links to the Dutch were never severed, and he maintained extensive contacts with leading Dutch scientists through- out his life. Linnaeus’ Dutch connections meant that his own students would become associated with the VOC. -
Linnaeus at Home
NATURE-BASED ACTIVITIES FOR PARENTS LINNAEUS 1 AT HOME A GuiDE TO EXPLORING NATURE WITH CHILDREN Acknowledgements Written by Joe Burton Inspired by Carl Linnaeus With thanks to editors and reviewers: LINNAEUS Lyn Baber, Melissa Balzano, Jane Banham, Sarah Black, Isabelle Charmantier, Mark Chase, Maarten Christenhusz, Alex Davey, Gareth Dauley, AT HOME Zia Forrai, Jon Hale, Simon Hiscock, Alice ter Meulen, Lynn Parker, Elizabeth Rollinson, James Rosindell, Daryl Stenvoll-Wells, Ross Ziegelmeier Share your explorations @LinneanLearning #LinnaeusAtHome Facing page: Carl Linnaeus paper doll, illustrated in 1953. © Linnean Society of London 2019 All rights reserved. No part of this publication may be reproduced, stored in a retrival system or trasmitted in any form or by any means without the prior consent of the copyright owner. www.linnean.org/learning “If you do not know Introduction the names of things, the knowledge of them is Who was Carl Linnaeus? Contents Pitfall traps 5 lost too” Carl Linnaeus was one of the most influential scientists in the world, - Carl Linnaeus A bust of ‘The Young Linnaeus’ by but you might not know a lot about him. Thanks to Linnaeus, we Bug hunting 9 Anthony Smith (2007). have a naming system for all species so that we can understand how different species are related and can start to learn about the origins Plant hunting 13 of life on Earth. Pond dipping 17 As a young man, Linnaeus would study the animals, plants, Bird feeders 21 minerals and habitats around him. By watching the natural world, he began to understand that all living things are adapted to their Squirrel feeders 25 environments and that they can be grouped together by their characteristics (like animals with backbones, or plants that produce Friendly spaces 29 spores). -
Archaeoglobus Profundus Type Strain (AV18T)
Standards in Genomic Sciences (2010) 2:327-346 DOI:10.4056/sigs.942153 Complete genome sequence of Archaeoglobus profundus type strain (AV18T) Mathias von Jan1, Alla Lapidus2, Tijana Glavina Del Rio2, Alex Copeland2, Hope Tice2, Jan-Fang Cheng2, Susan Lucas2, Feng Chen2, Matt Nolan2, Lynne Goodwin2,3, Cliff Han2,3, Sam Pitluck2, Konstantinos Liolios2, Natalia Ivanova2, Konstantinos Mavromatis2, Galina Ovchinnikova2, Olga Chertkov2, Amrita Pati2, Amy Chen4, Krishna Palaniappan4, Miriam Land2,5, Loren Hauser2,5, Yun-Juan Chang2,5, Cynthia D. Jeffries2,5, Elizabeth Saunders2, Thomas Brettin2,3, John C. Detter2,3, Patrick Chain2,4, Konrad Eichinger6, Harald Huber6, Ste- fan Spring1, Manfred Rohde7, Markus Göker1, Reinhard Wirth6, Tanja Woyke2, Jim Bristow2, Jonathan A. Eisen2,8, Victor Markowitz4, Philip Hugenholtz2, Nikos C Kyrpides2, and Hans-Peter Klenk1* 1 DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany 2 DOE Joint Genome Institute, Walnut Creek, California, USA 3 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA 4 Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA 5 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA 6 University of Regensburg, Microbiology – Archaeenzentrum, Regensburg, Germany 7 HZI – Helmholtz Centre for Infection Research, Braunschweig, Germany 8 University of California Davis Genome Center, Davis, California, USA *Corresponding author: Hans-Peter Klenk Keywords: hyperthermophilic, marine, strictly anaerobic, sulfate respiration, hydrogen utili- zation, hydrothermal systems, Archaeoglobaceae, GEBA Archaeoglobus profundus (Burggraf et al. 1990) is a hyperthermophilic archaeon in the eu- ryarchaeal class Archaeoglobi, which is currently represented by the single family Archaeog- lobaceae, containing six validly named species and two strains ascribed to the genus 'Geoglobus' which is taxonomically challenged as the corresponding type species has no va- lidly published name. -
Assessment of the Carbon Monoxide Metabolism of the Hyperthermophilic Sulfate-Reducing Archaeon Archaeoglobus Fulgidus VC-16 by Comparative Transcriptome Analyses
Hindawi Publishing Corporation Archaea Volume 2015, Article ID 235384, 12 pages http://dx.doi.org/10.1155/2015/235384 Research Article Assessment of the Carbon Monoxide Metabolism of the Hyperthermophilic Sulfate-Reducing Archaeon Archaeoglobus fulgidus VC-16 by Comparative Transcriptome Analyses William P. Hocking, Irene Roalkvam, Carina Magnussen, Runar Stokke, and Ida H. Steen Department of Biology, Centre for Geobiology, University of Bergen, 5020 Bergen, Norway Correspondence should be addressed to Ida H. Steen; [email protected] Received 10 April 2015; Revised 9 June 2015; Accepted 14 June 2015 Academic Editor: Uwe Deppenmeier Copyright © 2015 William P. Hocking et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The hyperthermophilic, sulfate-reducing archaeon, Archaeoglobus fulgidus, utilizes CO as an energy source and it is resistant to the toxic effects of high CO concentrations. Herein, transcription profiles were obtained from A. fulgidus during growth with CO and sulfate or thiosulfate, or without an electron acceptor. This provided a basis for a model of the CO metabolism of A. fulgidus. The model suggests proton translocation by “Mitchell-type” loops facilitated by Fqo catalyzingred aFd :menaquinone oxidoreductase reaction, as the major mode of energy conservation, rather than formate or H2 cycling during respiratory growth. The bifunctional CODH (cdhAB-2) is predicted to play an ubiquitous role in the metabolism of CO, and a novel nitrate reductase- associated respiratory complex was induced specifically in the presence of sulfate. A potential role of this complex in relation to Fdred and APS reduction is discussed. -
“The Infinite Universe of the New Cosmology, Infinite in Duration As Well As Exten- Sion, in Which Eternal Matter in Accordanc
“The infinite Universe of the New Cosmology, infinite in Duration as well as Exten- sion, in which eternal matter in accordance with eternal and necessary laws moves endlessly and aimlessly in eternal space, inherited all the ontological attributes of Divinity. Yet only those — all the others the departed God took with him... The Divine Artifex had therefore less and less to do in the world. He did not even have to con- serve it, as the world, more and more, became able to dispense with this service...” ALEXANDRE KOYRE, “From the Closed World to the Infinite Universe”, 1957 into the big world -26- “La raison pour laquelle la relocalisation du global est devenue si importante est que le Terre elle-même pourrait bien ne pas être un globe après tout (...). Même la fameuse vision de la “planète bleue” pour- rait se révéler comme une image composite, c’est à dire une image composée de l’ancienne forme donnée au Dieu chrétien et du réseau complexe d’acquisitions de données de la NASA, à son tour projeté à l’intérieur du panorama diffracté des médias. Voilà peut-être la source de la fascination que l’image de la sphère a exercé depuis: la forme sphérique arrondit la con- naissance en un volume continu, complet, transparent, omniprésent qui masque la tâche extraordinairement difficile d’assembler les points de données venant de tous les instruments et de toutes les disciplines. Une sphère n’a pas d’histoire, pas de commencement, pas de fin, pas de trou, pas de discontinuité d’aucune sorte.” BRUNO LATOUR, “l’Anthropocène et la Destruction de l’Image -
Names of Botanical Genera Inspired by Mythology
Names of botanical genera inspired by mythology Iliana Ilieva * University of Forestry, Sofia, Bulgaria. GSC Biological and Pharmaceutical Sciences, 2021, 14(03), 008–018 Publication history: Received on 16 January 2021; revised on 15 February 2021; accepted on 17 February 2021 Article DOI: https://doi.org/10.30574/gscbps.2021.14.3.0050 Abstract The present article is a part of the project "Linguistic structure of binomial botanical denominations". It explores the denominations of botanical genera that originate from the names of different mythological characters – deities, heroes as well as some gods’ attributes. The examined names are picked based on “Conspectus of the Bulgarian vascular flora”, Sofia, 2012. The names of the plants are arranged in alphabetical order. Beside each Latin name is indicated its English common name and the family that the particular genus belongs to. The article examines the etymology of each name, adding a short account of the myth based on which the name itself is created. An index of ancient authors at the end of the article includes the writers whose works have been used to clarify the etymology of botanical genera names. Keywords: Botanical genera names; Etymology; Mythology 1. Introduction The present research is a part of the larger project "Linguistic structure of binomial botanical denominations", based on “Conspectus of the Bulgarian vascular flora”, Sofia, 2012 [1]. The article deals with the botanical genera appellations that originate from the names of different mythological figures – deities, heroes as well as some gods’ attributes. According to ICBN (International Code of Botanical Nomenclature), "The name of a genus is a noun in the nominative singular, or a word treated as such, and is written with an initial capital letter (see Art.