Spongiane Diterpenoids†
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Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution
marine drugs Review A Soft Spot for Chemistry–Current Taxonomic and Evolutionary Implications of Sponge Secondary Metabolite Distribution Adrian Galitz 1 , Yoichi Nakao 2 , Peter J. Schupp 3,4 , Gert Wörheide 1,5,6 and Dirk Erpenbeck 1,5,* 1 Department of Earth and Environmental Sciences, Palaeontology & Geobiology, Ludwig-Maximilians-Universität München, 80333 Munich, Germany; [email protected] (A.G.); [email protected] (G.W.) 2 Graduate School of Advanced Science and Engineering, Waseda University, Shinjuku-ku, Tokyo 169-8555, Japan; [email protected] 3 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, 26111 Wilhelmshaven, Germany; [email protected] 4 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg (HIFMB), 26129 Oldenburg, Germany 5 GeoBio-Center, Ludwig-Maximilians-Universität München, 80333 Munich, Germany 6 SNSB-Bavarian State Collection of Palaeontology and Geology, 80333 Munich, Germany * Correspondence: [email protected] Abstract: Marine sponges are the most prolific marine sources for discovery of novel bioactive compounds. Sponge secondary metabolites are sought-after for their potential in pharmaceutical applications, and in the past, they were also used as taxonomic markers alongside the difficult and homoplasy-prone sponge morphology for species delineation (chemotaxonomy). The understanding Citation: Galitz, A.; Nakao, Y.; of phylogenetic distribution and distinctiveness of metabolites to sponge lineages is pivotal to reveal Schupp, P.J.; Wörheide, G.; pathways and evolution of compound production in sponges. This benefits the discovery rate and Erpenbeck, D. A Soft Spot for yield of bioprospecting for novel marine natural products by identifying lineages with high potential Chemistry–Current Taxonomic and Evolutionary Implications of Sponge of being new sources of valuable sponge compounds. -
Marine Spongin: Naturally Prefabricated 3D Scaffold-Based Biomaterial
marine drugs Review Marine Spongin: Naturally Prefabricated 3D Scaffold-Based Biomaterial Teofil Jesionowski 1,*, Małgorzata Norman 1, Sonia Z˙ ółtowska-Aksamitowska 1, Iaroslav Petrenko 2, Yvonne Joseph 3 ID and Hermann Ehrlich 2,* 1 Institute of Chemical Technology and Engineering, Faculty of Chemical Technology, Poznan University of Technology, Berdychowo 4, 60965 Poznan, Poland; [email protected] (M.N.); [email protected] (S.Z.-A.)˙ 2 Institute of Experimental Physics, TU Bergakademie Freiberg, Leipziger str. 23, 09559 Freiberg, Germany; [email protected] 3 Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav-Zeuner-Str. 3, 09599 Freiberg, Germany; [email protected] * Correspondence: teofi[email protected] (T.J.); [email protected] (H.E.); Tel.: +48-61-665-3720 (T.J.); +49-3731-39-2867 (H.E.) Received: 30 January 2018; Accepted: 6 March 2018; Published: 9 March 2018 Abstract: The biosynthesis, chemistry, structural features and functionality of spongin as a halogenated scleroprotein of keratosan demosponges are still paradigms. This review has the principal goal of providing thorough and comprehensive coverage of spongin as a naturally prefabricated 3D biomaterial with multifaceted applications. The history of spongin’s discovery and use in the form of commercial sponges, including their marine farming strategies, have been analyzed and are discussed here. Physicochemical and material properties of spongin-based scaffolds are also presented. The review also focuses on prospects and trends in applications of spongin for technology, materials science and biomedicine. Special attention is paid to applications in tissue engineering, adsorption of dyes and extreme biomimetics. -
The Organic Chemistry of Drug Synthesis
The Organic Chemistry of Drug Synthesis VOLUME 2 DANIEL LEDNICER Mead Johnson and Company Evansville, Indiana LESTER A. MITSCHER The University of Kansas School of Pharmacy Department of Medicinal Chemistry Lawrence, Kansas A WILEY-INTERSCIENCE PUBLICATION JOHN WILEY AND SONS, New York • Chichester • Brisbane • Toronto Copyright © 1980 by John Wiley & Sons, Inc. All rights reserved. Published simultaneously in Canada. Reproduction or translation of any part of this work beyond that permitted by Sections 107 or 108 of the 1976 United States Copyright Act without the permission of the copyright owner is unlawful. Requests for permission or further information should be addressed to the Permissions Department, John Wiley & Sons, Inc. Library of Congress Cataloging in Publication Data: Lednicer, Daniel, 1929- The organic chemistry of drug synthesis. "A Wiley-lnterscience publication." 1. Chemistry, Medical and pharmaceutical. 2. Drugs. 3. Chemistry, Organic. I. Mitscher, Lester A., joint author. II. Title. RS421 .L423 615M 91 76-28387 ISBN 0-471-04392-3 Printed in the United States of America 10 987654321 It is our pleasure again to dedicate a book to our helpmeets: Beryle and Betty. "Has it ever occurred to you that medicinal chemists are just like compulsive gamblers: the next compound will be the real winner." R. L. Clark at the 16th National Medicinal Chemistry Symposium, June, 1978. vii Preface The reception accorded "Organic Chemistry of Drug Synthesis11 seems to us to indicate widespread interest in the organic chemistry involved in the search for new pharmaceutical agents. We are only too aware of the fact that the book deals with a limited segment of the field; the earlier volume cannot be considered either comprehensive or completely up to date. -
An Annotated Checklist of the Marine Macroinvertebrates of Alaska David T
NOAA Professional Paper NMFS 19 An annotated checklist of the marine macroinvertebrates of Alaska David T. Drumm • Katherine P. Maslenikov Robert Van Syoc • James W. Orr • Robert R. Lauth Duane E. Stevenson • Theodore W. Pietsch November 2016 U.S. Department of Commerce NOAA Professional Penny Pritzker Secretary of Commerce National Oceanic Papers NMFS and Atmospheric Administration Kathryn D. Sullivan Scientific Editor* Administrator Richard Langton National Marine National Marine Fisheries Service Fisheries Service Northeast Fisheries Science Center Maine Field Station Eileen Sobeck 17 Godfrey Drive, Suite 1 Assistant Administrator Orono, Maine 04473 for Fisheries Associate Editor Kathryn Dennis National Marine Fisheries Service Office of Science and Technology Economics and Social Analysis Division 1845 Wasp Blvd., Bldg. 178 Honolulu, Hawaii 96818 Managing Editor Shelley Arenas National Marine Fisheries Service Scientific Publications Office 7600 Sand Point Way NE Seattle, Washington 98115 Editorial Committee Ann C. Matarese National Marine Fisheries Service James W. Orr National Marine Fisheries Service The NOAA Professional Paper NMFS (ISSN 1931-4590) series is pub- lished by the Scientific Publications Of- *Bruce Mundy (PIFSC) was Scientific Editor during the fice, National Marine Fisheries Service, scientific editing and preparation of this report. NOAA, 7600 Sand Point Way NE, Seattle, WA 98115. The Secretary of Commerce has The NOAA Professional Paper NMFS series carries peer-reviewed, lengthy original determined that the publication of research reports, taxonomic keys, species synopses, flora and fauna studies, and data- this series is necessary in the transac- intensive reports on investigations in fishery science, engineering, and economics. tion of the public business required by law of this Department. -
Embryonic Development of Verongid Demosponges Supports the Independent Acquisition of Spongin Skeletons As an Alternative to the Siliceous Skeleton
Biological Journal of the Linnean Society, 2009, 97, 427–447. With 14 figures Embryonic development of verongid demosponges supports the independent acquisition of spongin skeletons as an alternative to the siliceous skeleton of spongesbij_1202 427..446 MANUEL MALDONADO* Department of Marine Ecology, Centro de Estudios Avanzados de Blanes, Acceso Cala St Francesc 14, Blanes 17300, Girona, Spain Received 26 June 2008; accepted for publication 29 October 2008 Approximately 85% of extant sponges (phylum Porifera) belong to the class Demospongiae, which contains 14 taxonomic orders. In the orders Verongida, Dictyoceratida, and Dendroceratida, jointly referred to as ‘keratose demosponges’, the skeleton does not contain siliceous spicules but only spongin fibres. This shared trait has encouraged placement of these orders together within Demospongiae, although their relationships remain uncer- tain. The present study documents for the first time embryo development in the order Verongida (Aplysina aerophoba), providing some clues for phylogenetic inference. Spawned eggs were enveloped by a follicle of maternal cells. Embryos and larvae were chimeric organisms, the blastocoel of which was filled with symbionts and maternal cells migrated from the follicle. The ultrastructure of epithelial larval cells revealed: (1) a basal apparatus characterized by a peculiar, angling accessory centriole; (2) a pear-shaped nucleus with a protruding beak connected to the rootlets of the basal body; and (3) a distinctive Golgi apparatus encircling the nuclear apex. Developmental and ultrastructural findings support the concept, in congruence with recent molecular studies, that Verongida are more closely related to Halisarcida (askeletal sponges) and Chondrosida (askeletal sponges + sponges with spongin + spiculate sponges) than to the remaining ‘keratose’ orders, making a monophyletic ‘supra-ordinal unit’ equivalent to a subclass (Myxospongia, new subclass). -
Checklist of Sponges (Porifera) of the South China Sea Region
Micronesica 35-36:100-120. 2003 Taxonomic inventory of the sponges (Porifera) of the Mariana Islands MICHELLE KELLY National Institute of Water & Atmospheric Research (NIWA) Ltd Private Bag 109-695 Newmarket, Auckland, New Zealand JOHN HOOPER Queensland Museum P.O. Box 3300 South Brisbane, Queensland 4101, Australia VALERIE PAUL1 AND GUSTAV PAULAY2 Marine Laboratory University of Guam Mangilao, Guam 96923 USA ROB VAN SOEST AND WALLIE DE WEERDT Institute for Biodiversity and Ecosystem Dynamics Zoologisch Museum University of Amsterdam P. O. Box 94766, 1090 GT Amsterdam, The Netherlands Abstract—We review the sponge fauna of the Mariana Islands based on new and existing collections, and literature records. 124 species of siliceous sponges (Class Demospongiae) and 4 species of calcareous sponges (Class Calcarea) have been identified to date, representing 73 genera, 44 families, within 16 orders. Several species are adventive. Approximately 30% (40) of the species encountered are undescribed, but not all are endemics, as the authors know them from other locations. Approximately 30% (38) of the species are known from diverse locations within the Indo West Pacific, but several well-known, widespread species are absent. The actual diversity of sponge fauna of the Marianas is considerably higher, as many species, especially cryptic and encrusting taxa, remain to be collected and studied. Introduction Our knowledge of the sponge fauna of the tropical Pacific has increased substantially in recent years, as a result of enhanced collecting effort driven in 1 current address: Smithsonian Marine Station at Fort Pierce, Fort Pierce FL 34949 2 corresponding author; current address: Florida Museum of Natural History, University of Florida, Gainesville FL 32611-7800, USA; email: [email protected] Kelly et al.: Sponges of the Marianas 101 part by pharmaceutical interests, and by the attention of a larger number of systematists working on Pacific sponges than ever before. -
Spongivory by Nudibranchs on the Coast of Rio De Janeiro State, Southeastern Brazil
©Zoologische Staatssammlung München/Verlag Friedrich Pfeil; download www.pfeil-verlag.de SPIXIANA 38 2 187-195 München, Dezember 2015 ISSN 0341-8391 Spongivory by nudibranchs on the coast of Rio de Janeiro state, southeastern Brazil (Mollusca, Gastropoda) Thalita Belmonte, Juliana Alvim, Vinicius Padula & Guilherme Muricy Belmonte, T., Alvim, J., Padula, V. & Muricy, G. 2015. Spongivory by nudibranchs on the coast of Rio de Janeiro state, southeastern Brazil (Mollusca, Gastropoda). Spixiana 38 (2): 187-195. Nudibranch gastropods are carnivores and most dorid nudibranchs are spongi- vores, preying on a single or a few species of sponges. The feeding biology has important biological, ecological and evolutionary implications, and many charac- teristics of nudibranchs likely arose from co-evolution with diet organisms. Data on spongivory by dorid nudibranchs are available for many species from the Indo- Pacific, eastern Pacific and the Mediterranean Sea, but such information is scarce for the southwestern Atlantic. In this study we provide qualitative data on spongi- vory by dorid nudibranchs along the coast of Rio de Janeiro State, southeastern Brazil, including the identification of the species involved. A total of 94 spongi- vory events were observed between 12 nudibranch and 13 sponge species, greatly expanding our knowledge of predator-prey interactions. Among the sponges preyed upon, one species belongs to the class Homoscleromorpha (Plakina sp.) and 12 species to the class Demospongiae. Our observations show that spongivorous nudibranchs have a more diverse diet than previously thought. Additional observa- tions on a higher number of species from different biogeographic regions are needed for a better understanding of the feeding preferences of the diverse and ecologically important spongivorous dorid nudibranchs. -
THE STEREOCHEMISTRY of the CATALYTIC HYDROGENATION of Compounds Containing an a S M E T R Ic CARBON ATOM
THE STEREOCHEMISTRY OF THE CATALYTIC HYDROGENATION of compounds containing an a s m e t r ic CARBON ATOM By TERENCE JOHN HOWARD A T hesis submitted to the University of London for the Degree of Doctor of Philosophy in th e Faculty of Science The Organic Research Laboratories, Battersea College of Technology, Sept. i 960 London, S.W .ll. ProQuest Number: 10804653 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. uest ProQuest 10804653 Published by ProQuest LLC(2018). Copyright of the Dissertation is held by the Author. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code Microform Edition © ProQuest LLC. ProQuest LLC. 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 4 8 1 0 6 - 1346 2 ABSTRACT OF THESIS 4-Phenyl pen t-3-en-2--one has been prepared by the reaction of dimethyl cadmium with j3~methylcinnamoyl chloride, and its structure confirmed by a haloform degradation to trans - Q - methylcinnamic acid. Reduction of the ketone with aluminium isopropoxide gave (i)-4“Pbenylpent-3-en~2~ol, characterised by the preparation of the 3J-a-naphthyl and R-4-diphenylyl-carbamates. On catalytic hydrogenation (-)-4“-phenylpent-3-en-2--ol gave a mixture of the two diastereoisomeric racemates of (-)~4~phenylpentan-2-ol in which a new centre of asymmetry has been generated at C^. -
Porifera) Using Nuclear Encoded Housekeeping Genes
Reconstruction of Family-Level Phylogenetic Relationships within Demospongiae (Porifera) Using Nuclear Encoded Housekeeping Genes Malcolm S. Hill1, April L. Hill1, Jose Lopez2, Kevin J. Peterson3, Shirley Pomponi4, Maria C. Diaz5, Robert W. Thacker6, Maja Adamska7, Nicole Boury-Esnault8, Paco Ca´rdenas9, Andia Chaves-Fonnegra2, Elizabeth Danka1, Bre-Onna De Laine1, Dawn Formica2, Eduardo Hajdu10, Gisele Lobo-Hajdu11, Sarah Klontz12, Christine C. Morrow13, Jignasa Patel2, Bernard Picton14, Davide Pisani15, Deborah Pohlmann1, Niamh E. Redmond12, John Reed4, Stacy Richey1, Ana Riesgo16, Ewelina Rubin2, Zach Russell1, Klaus Ru¨ tzler12, Erik A. Sperling17, Michael di Stefano1, James E. Tarver18, Allen G. Collins12,19* 1 Gottwald Science Center, University of Richmond, Richmond, Virginia, United States of America, 2 Nova Southeastern University Oceanographic Center, Dania Beach, Florida, United States of America, 3 Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire, United States of America, 4 Harbor Branch Oceanographic Institute, Florida Atlantic University, Fort Pierce, Florida, United States of America, 5 Museo Marino de Margarita, Boulevard de Boca Del Rio, Boca del Rio, Nueva Esparta, Venezuela, 6 Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America, 7 Sars International Centre for Marine Molecular Biology, Thormøhlensgt, Bergen, Norway, 8 IMBE-UMR7263 CNRS, Universite´ d’Aix-Marseille, Station marine d’Endoume, Marseille, France, 9 Department of Systematic -
From the Andaman Sea/Indian Ocean with a Ba
bioRxiv preprint doi: https://doi.org/10.1101/636043; this version posted June 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 First report of marine sponge Chelonaplysilla delicata (Demospongiae: Darwinellidae) from 2 the Andaman Sea/Indian Ocean with a baseline information of epifauna on a mesophotic 3 shipwreck 4 Rocktim Ramen Das1,2*, Titus Immanuel1,3, Raj Kiran Lakra1, Karan baath4 and Ganesh 5 Thiruchitrambalam1 6 1Department of Ocean Studies and Marine Biology, Pondicherry University, brookshabad, 7 Andaman Islands, India 8 2Graduate School of Engineering and Science, University of the Ryukyus, Nishihara, Okinawa, 9 Japan 10 3Marine Biology Regional Centre (MBRC), Zoological Survey of India (ZSI), Chennai, Tamil Nadu, 11 India 12 4Infinity Scuba Andaman’s, Chidiyatapu, Andaman Islands, India 13 Correspondence e-mail: [email protected]; [email protected] 14 Abstract 15 During a biodiversity assessment on a wreck located in the Andaman Sea (Andaman Islands), a 16 single specimen of sponge Chelonaplysilla delicata was recorded. Our finding confirms the 17 species taxonomy and highlights the current observation as a first report from the Andaman 18 Sea/ Indian Ocean. The baseline information of epifauna is further stated in this study. 19 Keywords: Biodiversity, Porifera Taxonomy, Invasive, Tubastraea 20 INTRODUCTION 21 The Andaman Sea, an eastern subdivision of the Indian Ocean is bordered by countries like 22 Thailand, Myanmar on the east and the Andaman archipelago (Andaman & Nicobar 23 Islands/ANI) on the west (Brown 2007). -
Total Syntheses and Synthetic Studies of Spongiane Diterpenes
Available online at www.sciencedirect.com Tetrahedron 64 (2008) 445e467 www.elsevier.com/locate/tet Tetrahedron report number 821 Total syntheses and synthetic studies of spongiane diterpenes Miguel A. Gonza´lez* Departamento de Quı´mica Orga´nica, Universidad de Valencia, E-46100 Burjassot, Valencia, Spain Received 2 October 2007 Available online 22 October 2007 Keywords: Diterpenes; Spongiane; Marine natural products; Synthesis Contents 1. Introduction ................................................................................................................. 445 2. Structure, occurrence, and biological activity ................................................................................ 446 3. Syntheses of spongiane diterpenes ........................................................................................... 446 3.1. Syntheses from other natural products ............................................................................... 446 3.2. Syntheses by biomimetic approaches ................................................................................. 456 3.3. Other approaches and total syntheses ................................................................................ 459 4. Conclusions .................................................................................................................. 465 Acknowledgements .......................................................................................................... 465 References and notes .......................................................................................................