(Cyanophyta) of Goalpara District, Assam, India
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PCR Based Molecular Characterization of Cyanobacteria with Special Emphasis on Non-Heterocystous Filamentous Cyanobacteria Gunapati Oinam, O.N.Tiwari* and G.D
ERSITY IV N S Assam University Journal of Science & Technology : ISSN 0975-2773 U I L M C H A S A Biological and Environmental Sciences R S A Vol. 7 Number I 101-113, 2011 PCR Based Molecular Characterization of Cyanobacteria with Special Emphasis on Non-Heterocystous Filamentous Cyanobacteria Gunapati Oinam, O.N.Tiwari* and G.D. Sharma** Microbial Bioprospecting Laboratory Institute of Bioresources and Sustainable Development Takyelpat, Imphal-795001, Manipur, INDIA ** Department of Life science, Assam University, Silchar, Assam *Corresponding author email : [email protected] Abstract Cyanobacteria have an ancient history dating almost 3.5 billion years and diversified extensively to become one of the most successful and ecologically significant organisms on earth, with respect to longevity of lineage and impact on earth’s early environment. Despite the availability of various monograph based on morphological and ecological variants, the identification and classification of cyanobacteria remain a difficult and confusing task leading to uncertain identifications. Therefore, molecular approaches based on PCR techniques and DNA fingerprinting have been adopted for taxonomical studies. Molecular markers such as RAPD, RFLP and AFLP are used for the PCR techniques. Keywords: Non-heterocystous, cyanobacteria, molecular characterization. Introduction Cyanobacteria are an ancient group of prokaryotic aided by the presence of exopolysaccharides such microorganisms exhibiting the general as mucilage and / or a firm sheath. The presence characteristics of gram-negative bacteria. They or absence of a heterocyst is an important feature are unique among the prokaryotes in possessing separating genera. However, gas vacuoles, the capacity of oxygenic photosynthesis. structures that aid buoyancy, are found in species Cyanobacteria are a morphologically diverse group of many different genera. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
The Spatial and Temporal Distribution and Environmental Drivers Of
THE SPATIAL AND TEMPORAL DISTRIBUTION AND POTENTIAL ENVIRONMENTAL DRIVERS OF SAXITOXIN IN NORTHWEST OHIO Callie A. Nauman A Thesis Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE May 2020 Committee: Timothy Davis, Advisor George Bullerjahn Justin Chaffin © 2020 Callie A. Nauman All Rights Reserved iii ABSTRACT Timothy Davis, Advisor Cyanobacterial harmful algal blooms threaten freshwater quality and human health around the world. One specific threat is the ability of some cyanobacteria to produce multiple types of toxins, including a range of neurotoxins called saxitoxins. While it is not completely understood, the general consensus is environmental factors like phosphorus, nitrogen, and light availability, may be driving forces in saxitoxin production. Recent surveys have determined saxitoxin and potential saxitoxin producing cyanobacterial species in both lakes and rivers across the United States and Ohio. Research evaluating benthic cyanobacterial blooms determined benthic cyanobacteria as a source for saxitoxin production in systems, specifically rivers. Currently, little is known about when, where, why, or who is producing saxitoxin in Ohio, and even less is known about the role benthic cyanobacterial blooms play in Ohio waterways. With increased detections of saxitoxin, the saxitoxin biosynthesis gene sxtA, and saxitoxin producing species in both the Western Basin of Lake Erie and the lake’s major tributary the Maumee River, seasonal sampling was conducted to monitor saxitoxin in both systems. The sampling took place from late spring to early autumn of 2018 and 2019. Monitoring including bi-/weekly water column sampling in the Maumee River and Lake Erie and Nutrient Diffusing Substrate (NDS) Experiments, were completed to evaluate saxitoxin, sxtA, potential environmental drivers, and benthic production. -
Florida's Marine Algal Toxins
Leanne J. Flewelling, Ph.D. Florida Fish and Wildlife Conservation Commission Fish and Wildlife Research Institute Distribution of HAB-related Poisoning Syndromes in the United States https://www.whoi.edu/redtide/regions/us-distribution Neurotoxic SP Paralytic SP Amnesic SP Diarrhetic SP CyanoHABs Ciguatera FP Brown tide Golden alga Gulf of Mexico Karlodinium SP = Shellfish Poisoning FP = Fish Poisoning Toxin-producing HABs present Karenia brevis human health risks. Organism(s) Toxins Syndrome Pyrodinium bahamense Karenia brevis Brevetoxins Neurotoxic Shellfish Poisoning Pyrodinium bahamense Saxitoxins Paralytic Shellfish Poisoning Saxitoxin Puffer Fish Poisoning Pseudo-nitzschia sp. Pseudo-nitzschia spp. Domoic Acid Amnesic Shellfish Poisoning Dinophysis spp. Okadaic Acid, Diarrhetic Shellfish Poisoning Prorocentrum spp. Dinophysistoxins Dinophysis sp. Gambierdiscus spp. Gambiertoxins, Ciguatera Fish Poisoning Maitotoxins Gambierdiscus sp. PyrodiniumKarenia brevis bahamensePseudo-nitzschia spp. Pyrodinium bahamense Bioluminescent dinoflagellate Atlantic strain (P. bahamense var. bahamense) was not known to be toxic until 2002 2002-2004:MICROSCOPY 28 cases saxitoxin poisoning associated with consumption of puffer fish originating in the Indian River Lagoon LIGHT (IRL) Pyrodinium bahamense in the IRL confirmed to produce saxitoxin First confirmation of saxitoxin in marine waters in Florida PermanentMICROSCOPY ban on harvest of puffer fish from the IRL Pyrodinium bahamense ELECTRON ELECTRON 30 µm 5 µm 30 µm Pyrodinium bahamense • blooms occur annually in the Indian River Lagoon and Old Tampa Bay • first PSP closure in Pine Island Sound in 2016 photo credit: Dorian Photography Pseudo-nitzschia spp. Cosmopolitan chain-forming marine diatom At least 14 species of Pseudo-nitzschia produce the neurotoxin domoic acid (DA) www.eos.ubc.ca/research/phytoplankton/ DA is the only marine algal toxin produced by diatoms DA can cause Amnesic Shellfish Poisoning in humans and Domoic Acid Poisoning in marine birds and mammals Domoic Acid Pseudo2016-nitzschia spp. -
DOMAIN Bacteria PHYLUM Cyanobacteria
DOMAIN Bacteria PHYLUM Cyanobacteria D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub IV F Homoeotrichaceae Chamaesiphonaceae Ammatoideaceae Microchaetaceae Borzinemataceae Family I Family I Family I Chroococcaceae Borziaceae Nostocaceae Capsosiraceae Dermocarpellaceae Gomontiellaceae Rivulariaceae Chlorogloeopsaceae Entophysalidaceae Oscillatoriaceae Scytonemataceae Fischerellaceae Gloeobacteraceae Phormidiaceae Loriellaceae Hydrococcaceae Pseudanabaenaceae Mastigocladaceae Hyellaceae Schizotrichaceae Nostochopsaceae Merismopediaceae Stigonemataceae Microsystaceae Synechococcaceae Xenococcaceae S-F Homoeotrichoideae Note: Families shown in green color above have breakout charts G Cyanocomperia Dactylococcopsis Prochlorothrix Cyanospira Prochlorococcus Prochloron S Amphithrix Cyanocomperia africana Desmonema Ercegovicia Halomicronema Halospirulina Leptobasis Lichen Palaeopleurocapsa Phormidiochaete Physactis Key to Vertical Axis Planktotricoides D=Domain; P=Phylum; C=Class; O=Order; F=Family Polychlamydum S-F=Sub-Family; G=Genus; S=Species; S-S=Sub-Species Pulvinaria Schmidlea Sphaerocavum Taxa are from the Taxonomicon, using Systema Natura 2000 . Triochocoleus http://www.taxonomy.nl/Taxonomicon/TaxonTree.aspx?id=71022 S-S Desmonema wrangelii Palaeopleurocapsa wopfnerii Pulvinaria suecica Key Genera D Bacteria Cyanobacteria P C Chroobacteria Hormogoneae Cyanobacteria O Chroococcales Oscillatoriales Nostocales Stigonematales Sub I Sub III Sub -
Benthic Cyanobacteria (Oscillatoriaceae) That Produce Microcystin-LR, Isolated from Four Reservoirs in Southern California
ARTICLE IN PRESS WATER RESEARCH 41 (2007) 492– 498 Available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/watres Benthic cyanobacteria (Oscillatoriaceae) that produce microcystin-LR, isolated from four reservoirs in southern California George Izaguirrea,Ã, Anne-Dorothee Jungblutb, Brett A. Neilanb aWater Quality Laboratory, 700 Moreno Avenue, Metropolitan Water District of Southern California, La Verne, CA 91750, USA bSchool of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, 2053 New South Wales, Australia article info ABSTRACT Article history: Cyanobacteria that produce the toxin microcystin have been isolated from many parts of Received 9 November 2005 the world. Most of these organisms are planktonic; however, we report on several Received in revised form microcystin-producing benthic filamentous cyanobacterial isolates from four drinking- 3 October 2006 water reservoirs in southern California (USA): Lake Mathews, Lake Skinner, Diamond Valley Accepted 4 October 2006 Lake (DVL), and Lake Perris. Some samples of benthic material from these reservoirs tested Available online 28 November 2006 positive for microcystin by an ELISA tube assay, and all the positive samples had in Keywords: common a green filamentous cyanobacterium 10–15 mm in diameter. Seventeen unialgal Cyanobacteria strains of the organism were isolated and tested positive by ELISA, and 11 cultures of these À1 Cyanotoxins strains were found to contain high concentrations of microcystin-LR (90–432 mgL ). The Lyngbya cultures were analyzed by protein phosphatase inhibition assay (PPIA) and HPLC with Microcystin photodiode array detector (PDA) or liquid chromatography/mass spectrometry (LC/MS). Phormidium Microcystin per unit carbon was determined for six cultures and ranged from 1.15 to 4.15 mgmgÀ1 C. -
Seeking the True Oscillatoria: a Quest for a Reliable Phylogenetic and Taxonomic Reference Point
Preslia 90: 151–169, 2018 151 Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point Hledání fylogenetického a taxonomického referenčního bodu pro rod Oscillatoria RadkaMühlsteinová1,2,TomášHauer1,2,PaulDe Ley3 &NicolePietrasiak4 1Department of Botany, Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice, Czech Republic, CZ-370 05, e-mail: [email protected]; 2The Czech Academy of Sciences, Institute of Botany, Centre for Phycology, Dukelská 135, CZ-379 82, Třeboň, Czech Republic, e-mail: [email protected]; 3Department of Nematology, University of California Riverside, Riverside, California 92521, USA, e-mail: [email protected]; 4Department of Plant and Environmental Science, New Mexico State University, Skeen Hall, Box 30003 MSC 3Q, Las Cruces, New Mexico 88003, USA, e-mail: [email protected] Mühlsteinová R., Hauer T., De Ley P. & Pietrasiak N. (2018): Seeking the true Oscillatoria: a quest for a reliable phylogenetic and taxonomic reference point. – Preslia 90: 151–169. Reliable taxonomy of any group of organisms cannot be performed without phylogenetic refer- ence points. In the historical “morphological era”, a designated type specimen was considered fully sufficient but nowadays this principle can prove to be problematic and challenging espe- cially when studying microscopic organisms. However, within the last decades there has been tre- mendous advancement in microscopy imaging and molecular biology offering additional data to systematic studies in ways that are revolutionizing cyanobacterial taxonomy. Unfortunately, most of the existing herbarium specimens or even iconotypes of old established taxa often cannot be subjects of modern analytic methods. Such is the case for the widely known cyanobacterial genus Oscillatoria which was introduced by Vaucher in 1803. -
First Insights Into the Impacts of Benthic Cyanobacterial Mats on Fish
www.nature.com/scientificreports OPEN First insights into the impacts of benthic cyanobacterial mats on fsh herbivory functions on a nearshore coral reef Amanda K. Ford 1,2*, Petra M. Visser 3, Maria J. van Herk3, Evelien Jongepier 4 & Victor Bonito5 Benthic cyanobacterial mats (BCMs) are becoming increasingly common on coral reefs. In Fiji, blooms generally occur in nearshore areas during warm months but some are starting to prevail through cold months. Many fundamental knowledge gaps about BCM proliferation remain, including their composition and how they infuence reef processes. This study examined a seasonal BCM bloom occurring in a 17-year-old no-take inshore reef area in Fiji. Surveys quantifed the coverage of various BCM-types and estimated the biomass of key herbivorous fsh functional groups. Using remote video observations, we compared fsh herbivory (bite rates) on substrate covered primarily by BCMs (> 50%) to substrate lacking BCMs (< 10%) and looked for indications of fsh (opportunistically) consuming BCMs. Samples of diferent BCM-types were analysed by microscopy and next-generation amplicon sequencing (16S rRNA). In total, BCMs covered 51 ± 4% (mean ± s.e.m) of the benthos. Herbivorous fsh biomass was relatively high (212 ± 36 kg/ha) with good representation across functional groups. Bite rates were signifcantly reduced on BCM-dominated substratum, and no fsh were unambiguously observed consuming BCMs. Seven diferent BCM-types were identifed, with most containing a complex consortium of cyanobacteria. These results provide insight into BCM composition and impacts on inshore Pacifc reefs. Tough scarcely mentioned in the literature a decade ago, benthic cyanobacterial mats (BCMs) are receiving increasing attention from researchers and managers as being a nuisance on tropical coral reefs worldwide1–4. -
The Classification of Lower Organisms
The Classification of Lower Organisms Ernst Hkinrich Haickei, in 1874 From Rolschc (1906). By permission of Macrae Smith Company. C f3 The Classification of LOWER ORGANISMS By HERBERT FAULKNER COPELAND \ PACIFIC ^.,^,kfi^..^ BOOKS PALO ALTO, CALIFORNIA Copyright 1956 by Herbert F. Copeland Library of Congress Catalog Card Number 56-7944 Published by PACIFIC BOOKS Palo Alto, California Printed and bound in the United States of America CONTENTS Chapter Page I. Introduction 1 II. An Essay on Nomenclature 6 III. Kingdom Mychota 12 Phylum Archezoa 17 Class 1. Schizophyta 18 Order 1. Schizosporea 18 Order 2. Actinomycetalea 24 Order 3. Caulobacterialea 25 Class 2. Myxoschizomycetes 27 Order 1. Myxobactralea 27 Order 2. Spirochaetalea 28 Class 3. Archiplastidea 29 Order 1. Rhodobacteria 31 Order 2. Sphaerotilalea 33 Order 3. Coccogonea 33 Order 4. Gloiophycea 33 IV. Kingdom Protoctista 37 V. Phylum Rhodophyta 40 Class 1. Bangialea 41 Order Bangiacea 41 Class 2. Heterocarpea 44 Order 1. Cryptospermea 47 Order 2. Sphaerococcoidea 47 Order 3. Gelidialea 49 Order 4. Furccllariea 50 Order 5. Coeloblastea 51 Order 6. Floridea 51 VI. Phylum Phaeophyta 53 Class 1. Heterokonta 55 Order 1. Ochromonadalea 57 Order 2. Silicoflagellata 61 Order 3. Vaucheriacea 63 Order 4. Choanoflagellata 67 Order 5. Hyphochytrialea 69 Class 2. Bacillariacea 69 Order 1. Disciformia 73 Order 2. Diatomea 74 Class 3. Oomycetes 76 Order 1. Saprolegnina 77 Order 2. Peronosporina 80 Order 3. Lagenidialea 81 Class 4. Melanophycea 82 Order 1 . Phaeozoosporea 86 Order 2. Sphacelarialea 86 Order 3. Dictyotea 86 Order 4. Sporochnoidea 87 V ly Chapter Page Orders. Cutlerialea 88 Order 6. -
Structure, Morphogenesis of Calyptra and Nomenclatural Identity of Trichodesmium Erythraeum Ehr
Bangladesh J. Plant Taxon. 27(2): 273-282, 2020 (December) © 2020 Bangladesh Association of Plant Taxonomists STRUCTURE, MORPHOGENESIS OF CALYPTRA AND NOMENCLATURAL IDENTITY OF TRICHODESMIUM ERYTHRAEUM EHR. (CYANOBACTERIA) NEWLY RECORDED OFF THE SOUTH-WEST COAST OF BANGLADESH ABDUL AZIZ*AND MAHIN MOHID Department of Botany, University of Dhaka, Dhaka 1000, Bangladesh Keywords: Trichodesmium erythraeum Ehr., Microcoleaceae, Calyptra morphogenesis, Cyanobacteria, Bangladesh Abstract Trichodesmium erythraeum Ehrenberg 1830 (Cyanobacteria) has been described and newly recorded from three km off the west coast of the St. Martin’s Island (SMI), Cox’s Bazar, Bangladesh. The Red Sea algal bloom was narrowly elliptical raft-like loose aggregates 20-40 cm long, 4-8 cm wide and 2-3 cm thick. Volume of small and large Sea sawdust were 160×10-6 to 960×10-6 m3 consisting of 25-153 millions flat tuft or spindle- like colonies measured 830-1500 µm long and 155-260 µm wide with 13-16 filaments laterally in the median region. Sheath was present around each trichome even covering the tip cell wall the feature has so far not been reported for the Trichodesmium spp. Because of most likely sticky nature of the sheath 300-600 µm long filaments of 195-450 formed compact colonies without colonial sheath around. In interior filaments cells were rectangular 7-10 µm long and 6.3-10 µm wide with abundant gas vacuoles, bluish-green red, no diazocyte developed and without calyptra. Cells of peripheral filaments were without gas vacuoles, cytoplasm disorganized, appearing necrotic with glycogen granules, and produced convex to sickle-shaped four-layered calyptra consisting of outermost sheath followed by outer extra thick wall, tip cell wall and inner extra thick wall on the tip cell. -
Nonheterocytous Cyanobacteria from Brazilian Saline-Alkaline Lakes
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Archive Ouverte en Sciences de l'Information et de la Communication Nonheterocytous cyanobacteria from Brazilian saline-alkaline lakes Ana Paula Dini Andreote, Marcelo Gomes Marçal Vieira Vaz, Diego Genuário, Laurent Barbiero, Ary Tavares Rezende-Filho, Marli Fiore To cite this version: Ana Paula Dini Andreote, Marcelo Gomes Marçal Vieira Vaz, Diego Genuário, Laurent Barbiero, Ary Tavares Rezende-Filho, et al.. Nonheterocytous cyanobacteria from Brazilian saline-alkaline lakes. European Journal of Phycology, Taylor & Francis, 2014, 50 (4), pp.675-684. 10.1111/jpy.12192. hal-02082696 HAL Id: hal-02082696 https://hal.archives-ouvertes.fr/hal-02082696 Submitted on 28 Mar 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NON-HETEROCYTOUS CYANOBACTERIA FROM BRAZILIAN SALINE-ALKALINE LAKES Ana Paula Dini Andreote University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970, Piracicaba, São Paulo, Brazil. Marcelo Gomes Marçal Vieira Vaz University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970, Piracicaba, São Paulo, Brazil. Diego Bonaldo Genuário University of São Paulo, Center for Nuclear Energy in Agriculture, Avenida Centenário 303, 13400-970, Piracicaba, São Paulo, Brazil. -
Phenotype Diversity of the Cyanobacterial Genus Leptolyngbya in the Maritime Antarctic
vol. 28, no. 3, pp. 211–231, 2007 Phenotype diversity of the cyanobacterial genus Leptolyngbya in the maritime Antarctic Jiří KOMÁREK Botanický ústav, Akademie věd České Republiky, Centrum pro algologii and Jihočeská univerzita, Biologická fakulta, Dukelská 135, CZ−379 82 Třeboň, Česká republika <[email protected]> Abstract: The common and ecologically important cyanobacterial form−genus Lepto− lyngbya is widely distributed in numerous ecosystems over the Earth's biosphere. Several morphospecies dominate microbial communities in polar habitats, but their diversity and local ecological significance are little known. Several articles characterising strains iso− lated from Antarctic coastal habitats by molecular methods were published, but knowl− edge of their phenotype and ecological characters are indispensable for future detailed en− vironmental studies. Distinct morpho− and ecotypes (ecologically important morpho− species) from maritime Antarctica are characterised in this article. Eight dominant Leptolyngbya types from subaerophytic and freshwater habitats were recognised, and four of them (L. borchgrevinkii, L. fritschiana, L. nigrescens and L. vincentii)arede− scribed as new distinct species. Key words: Maritime Antarctica, Cyanobacteria, Leptolyngbya, taxonomy, ecology. Introduction The cyanobacterial genus Leptolyngbya was defined as a wide natural cluster (genotype) comprising several species of old traditional genera Lyngbya, Phor− midium and Plectonema. Species of this genus have thin filaments (0.5 to 3.5 µm wide) and parietal location of the thylakoids (Anagnostidis and Komárek 1988; Komárek and Anagnostidis 2005). This taxonomic cluster was designated originally as “LPP−group B” by bacteriologists (Rippka et al. 1979), and recently supported and justified by molecular analyses (Castenholz 2001; Taton et al. 2003; Taton in Komárek and Anagnostidis 2005; Casamatta et al.