Rice Black-Streaked Dwarf Virus P6 Self-Interacts to Form Punctate
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(LRV1) Pathogenicity Factor
Antiviral screening identifies adenosine analogs PNAS PLUS targeting the endogenous dsRNA Leishmania RNA virus 1 (LRV1) pathogenicity factor F. Matthew Kuhlmanna,b, John I. Robinsona, Gregory R. Bluemlingc, Catherine Ronetd, Nicolas Faseld, and Stephen M. Beverleya,1 aDepartment of Molecular Microbiology, Washington University School of Medicine in St. Louis, St. Louis, MO 63110; bDepartment of Medicine, Division of Infectious Diseases, Washington University School of Medicine in St. Louis, St. Louis, MO 63110; cEmory Institute for Drug Development, Emory University, Atlanta, GA 30329; and dDepartment of Biochemistry, University of Lausanne, 1066 Lausanne, Switzerland Contributed by Stephen M. Beverley, December 19, 2016 (sent for review November 21, 2016; reviewed by Buddy Ullman and C. C. Wang) + + The endogenous double-stranded RNA (dsRNA) virus Leishmaniavirus macrophages infected in vitro with LRV1 L. guyanensis or LRV2 (LRV1) has been implicated as a pathogenicity factor for leishmaniasis Leishmania aethiopica release higher levels of cytokines, which are in rodent models and human disease, and associated with drug-treat- dependent on Toll-like receptor 3 (7, 10). Recently, methods for ment failures in Leishmania braziliensis and Leishmania guyanensis systematically eliminating LRV1 by RNA interference have been − infections. Thus, methods targeting LRV1 could have therapeutic ben- developed, enabling the generation of isogenic LRV1 lines and efit. Here we screened a panel of antivirals for parasite and LRV1 allowing the extension of the LRV1-dependent virulence paradigm inhibition, focusing on nucleoside analogs to capitalize on the highly to L. braziliensis (12). active salvage pathways of Leishmania, which are purine auxo- A key question is the relevancy of the studies carried out in trophs. -
Virus Goes Viral: an Educational Kit for Virology Classes
Souza et al. Virology Journal (2020) 17:13 https://doi.org/10.1186/s12985-020-1291-9 RESEARCH Open Access Virus goes viral: an educational kit for virology classes Gabriel Augusto Pires de Souza1†, Victória Fulgêncio Queiroz1†, Maurício Teixeira Lima1†, Erik Vinicius de Sousa Reis1, Luiz Felipe Leomil Coelho2 and Jônatas Santos Abrahão1* Abstract Background: Viruses are the most numerous entities on Earth and have also been central to many episodes in the history of humankind. As the study of viruses progresses further and further, there are several limitations in transferring this knowledge to undergraduate and high school students. This deficiency is due to the difficulty in designing hands-on lessons that allow students to better absorb content, given limited financial resources and facilities, as well as the difficulty of exploiting viral particles, due to their small dimensions. The development of tools for teaching virology is important to encourage educators to expand on the covered topics and connect them to recent findings. Discoveries, such as giant DNA viruses, have provided an opportunity to explore aspects of viral particles in ways never seen before. Coupling these novel findings with techniques already explored by classical virology, including visualization of cytopathic effects on permissive cells, may represent a new way for teaching virology. This work aimed to develop a slide microscope kit that explores giant virus particles and some aspects of animal virus interaction with cell lines, with the goal of providing an innovative approach to virology teaching. Methods: Slides were produced by staining, with crystal violet, purified giant viruses and BSC-40 and Vero cells infected with viruses of the genera Orthopoxvirus, Flavivirus, and Alphavirus. -
Opportunistic Intruders: How Viruses Orchestrate ER Functions to Infect Cells
REVIEWS Opportunistic intruders: how viruses orchestrate ER functions to infect cells Madhu Sudhan Ravindran*, Parikshit Bagchi*, Corey Nathaniel Cunningham and Billy Tsai Abstract | Viruses subvert the functions of their host cells to replicate and form new viral progeny. The endoplasmic reticulum (ER) has been identified as a central organelle that governs the intracellular interplay between viruses and hosts. In this Review, we analyse how viruses from vastly different families converge on this unique intracellular organelle during infection, co‑opting some of the endogenous functions of the ER to promote distinct steps of the viral life cycle from entry and replication to assembly and egress. The ER can act as the common denominator during infection for diverse virus families, thereby providing a shared principle that underlies the apparent complexity of relationships between viruses and host cells. As a plethora of information illuminating the molecular and cellular basis of virus–ER interactions has become available, these insights may lead to the development of crucial therapeutic agents. Morphogenesis Viruses have evolved sophisticated strategies to establish The ER is a membranous system consisting of the The process by which a virus infection. Some viruses bind to cellular receptors and outer nuclear envelope that is contiguous with an intri‑ particle changes its shape and initiate entry, whereas others hijack cellular factors that cate network of tubules and sheets1, which are shaped by structure. disassemble the virus particle to facilitate entry. After resident factors in the ER2–4. The morphology of the ER SEC61 translocation delivering the viral genetic material into the host cell and is highly dynamic and experiences constant structural channel the translation of the viral genes, the resulting proteins rearrangements, enabling the ER to carry out a myriad An endoplasmic reticulum either become part of a new virus particle (or particles) of functions5. -
Structure, Function and Intracellular Dynamics of Alphavirus Replication Complexes
Institute of Biotechnology Department of Biological and Environmental Sciences Division of Microbiology Faculty of Biosciences University of Helsinki and Viikki Graduate School in Biosciences Structure, function and intracellular dynamics of alphavirus replication complexes Giuseppe Balistreri ACADEMIC DISSERTATION To be presented, with the permission of the Faculty of Biosciences of the University of Helsinki, for public examination in Room 2041 at Biocenter Viikki (Viikinkaari 5), Helsinki, on 4th August 2010. Helsinki, 2010 To my astonishing beautiful wife Laura, the Sun in my life, and my little princesses Emilia, Sara and Kiira, who make my days such an unstoppable explosion of joy! Supervisor Professor Emeritus Leevi Kääriäinen and Docent Tero Ahola Institute of Biotechnology, University of Helsinki Viikinkaari 9, 00790 Helsinki, Finland Reviewers Professor Pirjo Laakkonen Molecular Cancer Biology Research Program, Institute of Biomedicine, University of Helsinki, Helsinki, Finland and A.I. Virtanen Institute for Molecular Medicine, University of Kuopio, Kuopio, Finland Docent Vesa Olkkonen Minerva Foundation Institute for Medical Research Biomedicum 2U, Tukholmankatu 8 00290 Helsinki, Finland Opponent Professor Kai Simons Max-Plank-Institute of Molecular Cell Biology and Genetics Pfotenhauerstrasse 108, 01307 Dresden, Germany ISBN 978-952-10-6377-0 (pbk.) ISBN 978-952-10-6378-7 (PDF) Helsinki University Printing House Helsinki 2010 Abstract Intracellular membrane alterations are hallmarks of positive-sense RNA (+RNA) virus replication. Strong evidence indicates that within these ‘exotic’ compartments, viral replicase proteins engage in RNA genome replication and transcription. To date, fundamental questions such as the origin of altered membranes, mechanisms of membrane deformation and topological distribution and function of viral components, are still waiting for comprehensive answers. -
Development of Leafhopper Cell Culture to Trace the Early Infection Process of a Nucleorhabdovirus, Rice Yellow Stunt Virus, In
Wang et al. Virology Journal (2018) 15:72 https://doi.org/10.1186/s12985-018-0987-6 RESEARCH Open Access Development of leafhopper cell culture to trace the early infection process of a nucleorhabdovirus, rice yellow stunt virus, in insect vector cells Haitao Wang, Juan Wang, Yunjie Xie, Zhijun Fu, Taiyun Wei* and Xiao-Feng Zhang* Abstract Background: In China, the rice pathogen Rice yellow stunt virus (RYSV), a member of the genus Nucleorhabdovirus in the family Rhabdoviridae, was a severe threat to rice production during the1960s and1970s. Fundamental aspects of the biology of this virus such as protein localization and formation of the RYSV viroplasm during infection of insect vector cells are largely unexplored. The specific role(s) of the structural proteins nucleoprotein (N) and phosphoprotein (P) in the assembly of the viroplasm during RYSV infection in insect vector is also unclear. Methods: In present study, we used continuous leafhopper cell culture, immunocytochemical techniques, and transmission electron microscopy to investigate the subcellular distributions of N and P during RYSV infection. Both GST pull-down assay and yeast two-hybrid assay were used to assess the in vitro interaction of N and P. The dsRNA interference assay was performed to study the functional roles of N and P in the assembly of RYSV viroplasm. Results: Here we demonstrated that N and P colocalized in the nucleus of RYSV-infected Nephotettix cincticeps cell and formed viroplasm-like structures (VpLSs). The transiently expressed N and P are sufficient to form VpLSs in the Sf9 cells. In addition, the interactions of N/P, N/N and P/P were confirmed in vitro. -
Negri Bodies and Other Virus Membrane-Less Replication Compartments Quentin Nevers, Aurélie A
Negri bodies and other virus membrane-less replication compartments Quentin Nevers, Aurélie A. Albertini, Cécile Lagaudrière-Gesbert, Yves Gaudin To cite this version: Quentin Nevers, Aurélie A. Albertini, Cécile Lagaudrière-Gesbert, Yves Gaudin. Negri bodies and other virus membrane-less replication compartments. Biochimica et Biophysica Acta - Molecular Cell Research, Elsevier, 2020, pp.118831. 10.1016/j.bbamcr.2020.118831. hal-02928156 HAL Id: hal-02928156 https://hal.archives-ouvertes.fr/hal-02928156 Submitted on 14 Dec 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID- 19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. -
Avian Reovirus Nonstructural Protein ANS Forms Viroplasm-Like Inclusions and Recruits Protein Jns to These Structures
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Virology 319 (2004) 94–106 www.elsevier.com/locate/yviro Avian reovirus nonstructural protein ANS forms viroplasm-like inclusions and recruits protein jNS to these structures Fernando Touris-Otero,a Jose´ Martı´nez-Costas,a Vikram N. Vakharia,b and Javier Benaventea,* a Departamento de Bioquı´mica y Biologı´a Molecular, Facultad de Farmacia, Universidad de Santiago de Compostela, 15782 Santiago de Compostela, Spain b Center for Biosystems Research, University of Maryland Biotechnology Institute and VA-MD Regional College of Veterinary Medicine, University of Maryland, College Park, MD 20742, USA Received 23 September 2003; returned to author for revision 24 October 2003; accepted 28 October 2003 Abstract The M3 genome segment of avian reovirus 1733, which encodes the nonstructural protein ANS, is 1996 nucleotides long and contains a long open reading frame that is predicted to encode a polypeptide of 635 amino acid residues. Examination of the deduced amino acid sequence of ANS revealed the presence of two regions near its carboxyl terminus with a high probability of forming a-helical coiled coils. Expression of the M3 gene in both infected and transfected cells revealed that this gene specifies two protein isoforms that are recognized by a ANS-specific antiserum. Only the larger ANS isoform, but not the smaller one, interacts with the nonstructural protein jNS in infected cells, suggesting that the two isoforms play different roles during avian reovirus infection. In the second part of this study, we show that ANS and the nonstructural protein jNS colocalize throughout the viral life cycle in large and small phase-dense globular cytoplasmic inclusions, which are believed to be the sites of viral replication and assembly. -
New Perspectives on the Biogenesis of Viral Inclusion Bodies in Negative-Sense RNA Virus Infections
cells Review New Perspectives on the Biogenesis of Viral Inclusion Bodies in Negative-Sense RNA Virus Infections Olga Dolnik , Gesche K. Gerresheim and Nadine Biedenkopf * Institute for Virology, Philipps-University Marburg, 35043 Marburg, Germany; [email protected] (O.D.); [email protected] (G.K.G.) * Correspondence: [email protected]; +49-(0)-64212825307 Abstract: Infections by negative strand RNA viruses (NSVs) induce the formation of viral inclusion bodies (IBs) in the host cell that segregate viral as well as cellular proteins to enable efficient viral replication. The induction of those membrane-less viral compartments leads inevitably to structural remodeling of the cellular architecture. Recent studies suggested that viral IBs have properties of biomolecular condensates (or liquid organelles), as have previously been shown for other membrane- less cellular compartments like stress granules or P-bodies. Biomolecular condensates are highly dynamic structures formed by liquid-liquid phase separation (LLPS). Key drivers for LLPS in cells are multivalent protein:protein and protein:RNA interactions leading to specialized areas in the cell that recruit molecules with similar properties, while other non-similar molecules are excluded. These typical features of cellular biomolecular condensates are also a common characteristic in the biogenesis of viral inclusion bodies. Viral IBs are predominantly induced by the expression of the viral nucleoprotein (N, NP) and phosphoprotein (P); both are characterized by a special protein architecture containing multiple disordered regions and RNA-binding domains that contribute to Citation: Dolnik, O.; Gerresheim, different protein functions. P keeps N soluble after expression to allow a concerted binding of N to G.K.; Biedenkopf, N. -
Role of Membrane Rafts in Viral Infection Tadanobu Takahashi and Takashi Suzuki*
178 The Open Dermatology Journal, 2009, 3, 178-194 Open Access Role of Membrane Rafts in Viral Infection Tadanobu Takahashi and Takashi Suzuki* Department of Biochemistry, School of Pharmaceutical Sciences, University of Shizuoka, and Global COE Program for Innovation in Human Health Sciences, Shizuoka 422-8526, Japan Abstract: Membrane rafts are small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched domains that compartmentalize cellular processes. Many studies have established that membrane rafts play an important role in the process of virus infection cycle and virus-associated diseases. It is well known that many viral components or virus receptors are concentrated in the lipid microdomains. Viruses are divided into four main classes, nonenveloped RNA virus, enveloped RNA virus, nonenveloped DNA virus, and enveloped DNA virus. General virus infection cycle is also classified into two sections, the early stage (entry) and the late stage (assembly and budding of virion). Caveola-dependent endocytosis has been investigated mostly by analysis of cell entry of the SV40 representative of polyomaviruses. Thus, the study of membrane rafts has been partially advanced by virological researches. Membrane rafts also act as a scaffold of many cellular signal transductions. Involvement of membrane rafts in many virus-associated diseases is often responsible for up- or down-regulation of cellular signal transductions. What is the role of membrane rafts in virus replications? Viruses do not necessarily require and probably utilize membrane rafts for more efficiency in virus entry, viral genome replication, high-infective virion production, and cellular signaling activation toward advantageous virus replication. In this review, we described the involvement of membrane rafts in the virus life cycle and virus-associated diseases. -
Characterization of Viroplasm Formation During the Early Stages Of
Carreño-Torres et al. Virology Journal 2010, 7:350 http://www.virologyj.com/content/7/1/350 RESEARCH Open Access Characterization of viroplasm formation during the early stages of rotavirus infection José J Carreño-Torres, Michelle Gutiérrez, Carlos F Arias, Susana López, Pavel Isa* Abstract Background: During rotavirus replication cycle, electron-dense cytoplasmic inclusions named viroplasms are formed, and two non-structural proteins, NSP2 and NSP5, have been shown to localize in these membrane-free structures. In these inclusions, replication of dsRNA and packaging of pre-virion particles occur. Despite the importance of viroplasms in the replication cycle of rotavirus, the information regarding their formation, and the possible sites of their nucleation during the early stages of infection is scarce. Here, we analyzed the formation of viroplasms after infection of MA104 cells with the rotavirus strain RRV, using different multiplicities of infection (MOI), and different times post-infection. The possibility that viroplasms formation is nucleated by the entering viral particles was investigated using fluorescently labeled purified rotavirus particles. Results: The immunofluorescent detection of viroplasms, using antibodies specific to NSP2 showed that both the number and size of viroplasms increased during infection, and depend on the MOI used. Small-size viroplasms predominated independently of the MOI or time post-infection, although at MOI’s of 2.5 and 10 the proportion of larger viroplasms increased. Purified RRV particles were successfully labeled with the Cy5 mono reactive dye, without decrease in virus infectivity, and the labeled viruses were clearly observed by confocal microscope. PAGE gel analysis showed that most viral proteins were labeled; including the intermediate capsid protein VP6. -
Comparative Plant Virology, Second Edition, by Roger Hull Revision to Fundamentals of Plant Virology Written by R
COMPARATIVE PLANT VIROLOGY SECOND EDITION science & ELSEVIERtechnology books Companion Web Site: http://www.elsevierdirect.com/companions/9780123741547 Comparative Plant Virology, Second Edition, by Roger Hull Revision to Fundamentals of Plant Virology written by R. Matthews Resources for Professors: • Image bank • Virus profiles TOOLS FOR YOUR TEACHING NEEDS ALL textbooks.elsevier.com ACADEMIC PRESS To adopt this book for course use, visit http://textbooks.elsevier.com COMPARATIVE PLANT VIROLOGY SECOND EDITION ROGER HULL Emeritus Fellow Department of Disease and Stress Biology John Innes Centre Norwich, UK AMSTERDAM • BOSTON • HEIDELBERG • LONDON NEW YORK • OXFORD • PARIS • SAN DIEGO SAN FRANCISCO • SINGAPORE • SYDNEY • TOKYO Academic Press is an imprint of Elsevier Cover Credits: BSMV leaf — Mild stripe mosaic; Symptom of BSMV in barley. Image courtesy of A.O. Jackson. BSMV genome: The infectious genome (BSMV) is divided between 3 species of positive sense ssRNA that are designated a, b, and g. Image courtesy of Roger Hull. BSMV particles. Image courtesy of Roger Hull. Diagram showing systemic spread of silencing signal: The signal is generated in the initially infected cell (bottom, left hand) and spreads to about 10–15 adjacent cells where it is amplified. It moves out of the initially infected leaf via the phloem sieve tubes and then spreads throughout systemic leaves being amplified at various times. Image courtesy of Roger Hull. Elsevier Academic Press 30 Corporate Drive, Suite 400, Burlington, MA 01803, USA 525 B Street, Suite 1900, San Diego, California 92101-4495, USA 84 Theobald’s Road, London WC1X 8RR, UK This book is printed on acid-free paper. Copyright # 2009, Elsevier Inc. -
Genome Replication and Packaging of Segmented Double-Stranded RNA Viruses
Virology 277, 217–225 (2000) doi:10.1006/viro.2000.0645, available online at http://www.idealibrary.com on CORE Metadata, citation and similar papers at core.ac.uk Provided by Elsevier - Publisher Connector MINIREVIEW Genome Replication and Packaging of Segmented Double-Stranded RNA Viruses John T. Patton*,1 and Eugenio Spencer†,2 *Laboratory of Infectious Diseases, National Institutes of Allergy and Infectious Diseases, National Institutes of Health, 7 Center Drive, MSC 0720, Room 117, Bethesda, Maryland 20892; and †Laboratorio de Virologia, Departamento de Ciencias Biolo´gicas, Facultad de Quı´mica y Biologı´a, Universidad de Santiago de Chile, Casilla 40 Correo 33, Santiago, Chile Received July 10, 2000; returned to author for revision September 1, 2000; accepted September 19, 2000 Viruses with segmented double-stranded (ds)RNA ge- Transcription of the Segmented Genome nomes infect a wide range of organisms including ver- by the Multiple Polymerase Units tebrates, invertebrates, plants, and bacteria and belong of the Core to the families Reoviridae, Birnaviridae, and Cystoviridae Structural studies have indicated that all segmented (Fauquet, 1994). The Reoviridae is the largest of the and some nonsegmented dsRNA viruses contain an ico- families and includes many well-studied viruses such as sahedral Tϭ2 core consisting of 120 capsid subunits bluetongue virus (BTV) (Roy, 1996), orthoreovirus (Nibert (core lattice protein: VP3 for BTV, 1 for reovirus, VP2 for et al., 1996), and rotavirus (Estes, 1996). Reovirus virions rotavirus), which immediately surrounds the genome are icosahedrons, made up of one or more layers of (Butcher et al., 1997; Caston et al., 1997; Grimes et al., capsid protein that enclose a genome consisting of 10, 1998; Hill et al., 1999; Lawton et al., 1997b; Reinisch et al., 11, or 12 equimolar segments of dsRNA (Hill et al., 1999; 2000).