Centronuclear Myopathy in Mice Lacking a Novel Muscle-Specific Protein Kinase Transcriptionally Regulated by MEF2
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Myotubular Myopathy Caused by Multiple Abnormal Splicing Variants in the MTM1 RNA in a Patient with a Mild Phenotype
European Journal of Human Genetics (2012) 20, 701–704 & 2012 Macmillan Publishers Limited All rights reserved 1018-4813/12 www.nature.com/ejhg SHORT REPORT Myotubular myopathy caused by multiple abnormal splicing variants in the MTM1 RNA in a patient with a mild phenotype Nasim Vasli1,2,3,4, Vincent Laugel5, Johann Bo¨hm1,2,3,4,Be´atrice Lannes6, Vale´rie Biancalana1,2,3,4,7and Jocelyn Laporte*,1,2,3,4 Mutations impacting on the splicing of pre-mRNA are one important cause of genetically inherited diseases. However, detection of splice mutations, that are mainly due to intronic variations, and characterization of their effects are usually not performed as a first approach during genetic diagnosis. X-linked recessive myotubular myopathy is a severe congenital myopathy due to mutations in the MTM1 gene encoding myotubularin. Here, we screened a male patient showing an unusually mild phenotype without respiratory distress by western blot with specific myotubularin antibodies and detected a strong reduction of the protein level.The disease was subsequently linked to a hemizygous point mutation affecting the acceptor splice site of exon 8 of MTM1, proven by protein, transcript and genomic DNA analysis. Detailed analysis of the MTM1 mRNA by RT-PCR, sequencing and quantitative PCR revealed multiple abnormal transcripts with retention of a truncated exon 8, and neighboring exons 7 and 9 but exclusion of several other exons, suggesting a complex effect of this mutation on the splicing of non-adjacent exons. We conclude that the analysis of RNA by RT-PCR and sequencing is an important step to characterize the precise impact of detected splice variants. -
Defining Functional Interactions During Biogenesis of Epithelial Junctions
ARTICLE Received 11 Dec 2015 | Accepted 13 Oct 2016 | Published 6 Dec 2016 | Updated 5 Jan 2017 DOI: 10.1038/ncomms13542 OPEN Defining functional interactions during biogenesis of epithelial junctions J.C. Erasmus1,*, S. Bruche1,*,w, L. Pizarro1,2,*, N. Maimari1,3,*, T. Poggioli1,w, C. Tomlinson4,J.Lees5, I. Zalivina1,w, A. Wheeler1,w, A. Alberts6, A. Russo2 & V.M.M. Braga1 In spite of extensive recent progress, a comprehensive understanding of how actin cytoskeleton remodelling supports stable junctions remains to be established. Here we design a platform that integrates actin functions with optimized phenotypic clustering and identify new cytoskeletal proteins, their functional hierarchy and pathways that modulate E-cadherin adhesion. Depletion of EEF1A, an actin bundling protein, increases E-cadherin levels at junctions without a corresponding reinforcement of cell–cell contacts. This unexpected result reflects a more dynamic and mobile junctional actin in EEF1A-depleted cells. A partner for EEF1A in cadherin contact maintenance is the formin DIAPH2, which interacts with EEF1A. In contrast, depletion of either the endocytic regulator TRIP10 or the Rho GTPase activator VAV2 reduces E-cadherin levels at junctions. TRIP10 binds to and requires VAV2 function for its junctional localization. Overall, we present new conceptual insights on junction stabilization, which integrate known and novel pathways with impact for epithelial morphogenesis, homeostasis and diseases. 1 National Heart and Lung Institute, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK. 2 Computing Department, Imperial College London, London SW7 2AZ, UK. 3 Bioengineering Department, Faculty of Engineering, Imperial College London, London SW7 2AZ, UK. 4 Department of Surgery & Cancer, Faculty of Medicine, Imperial College London, London SW7 2AZ, UK. -
Communication Pathways in Human Nonmuscle Myosin-2C 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 Authors: 25 Krishna Chinthalapudia,B,C,1, Sarah M
1 Mechanistic Insights into the Active Site and Allosteric 2 Communication Pathways in Human Nonmuscle Myosin-2C 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 Authors: 25 Krishna Chinthalapudia,b,c,1, Sarah M. Heisslera,d,1, Matthias Prellera,e, James R. Sellersd,2, and 26 Dietmar J. Mansteina,b,2 27 28 Author Affiliations 29 aInstitute for Biophysical Chemistry, OE4350 Hannover Medical School, 30625 Hannover, 30 Germany. 31 bDivision for Structural Biochemistry, OE8830, Hannover Medical School, 30625 Hannover, 32 Germany. 33 cCell Adhesion Laboratory, Department of Integrative Structural and Computational Biology, The 34 Scripps Research Institute, Jupiter, Florida 33458, USA. 35 dLaboratory of Molecular Physiology, NHLBI, National Institutes of Health, Bethesda, Maryland 36 20892, USA. 37 eCentre for Structural Systems Biology (CSSB), German Electron Synchrotron (DESY), 22607 38 Hamburg, Germany. 39 1K.C. and S.M.H. contributed equally to this work 40 2To whom correspondence may be addressed: E-mail: [email protected] or 41 [email protected] 42 43 1 44 Abstract 45 Despite a generic, highly conserved motor domain, ATP turnover kinetics and their activation by 46 F-actin vary greatly between myosin-2 isoforms. Here, we present a 2.25 Å crystal pre- 47 powerstroke state (ADPVO4) structure of the human nonmuscle myosin-2C motor domain, one 48 of the slowest myosins characterized. In combination with integrated mutagenesis, ensemble- 49 solution kinetics, and molecular dynamics simulation approaches, the structure reveals an 50 allosteric communication pathway that connects the distal end of the motor domain with the 51 active site. -
Myopathy Genes (HGNC) Neuropathy (HGNC) Neuromuscular Disease
Myopathy Genes Neuropathy Neuromuscular Disease (HGNC) (HGNC) (HGNC) ABHD5 ABCA1 ADCK3 ACTG2 ACO2 AGRN AGK AGXT ALS2 ALDOA AIFM1 ANG AMER1 ALAD AP4B1 ANO5 AMACR AP4E1 AR AP1S1 AP4M1 AUH APTX AP4S1 B4GALT1 AR AP5Z1 CACNA1S ATL3 ATM CASQ1 B4GALNT1 ATXN10 CCDC78 BAG3 ATXN7 CHCHD10 BRP44L BEAN1 CHRNA1 C12orf65 C9orf72 CHRNB1 C19orf12 CACNB4 CHRND C1NH CAPN3 CHRNE CECR1 CHAT CLPB CISD2 CHKB COL6A1 CLCF1 CHMP2B COL6A2 CLCN2 CHRNG COL6A3 CLP1 CLCN1 COLQ CMT2G COL9A3 CTNS CMT2H COQ2 DGUOK CMTDIA COQ6 DNA2 CMTX2 COQ9 DNAJB6 CMTX3 COX15 DNAJC19 COASY CPT1A DNM2 COX6A1 CYP7B1 DPM2 CPOX DAG1 DYSF CYP27A1 DDHD2 EMD CYP2U1 DOK7 EPG5 DARS2 DPAGT1 FAM111B DCAF8 DPM3 FBXL4 DDHD1 DUX4 FKBP14 DFNX5 ECEL1 FKRP DHTKD1 ERBB3 FLH1 DIAPH3 ERLIN2 FLNC DNAJB2 FA2H HNRNPA1 DNAJC3 FKTN HNRNPDL ELOVL5 FUS HNRPA2B1 ERCC8 G6PC KLHL40 FAH GFPT1 KLHL41 FAM126A GLE1 LAMA2 FBN1 GYS2 LDB3 FMR1 HSPD1 LMOD3 FXN IFRD1 MEGF10 GALC INF2 MGME1 GBE1 ISPD MTAP GJC2 ITGA7 MTMR14 GP1BA ITPR1 MYF6 HADHA KCNA1 MYH14 HADHB KCNC3 MYLK2 HFE KCNE3 NARS2 HINT1 KCNJ18 NEB HK1 KCNJ2 ORAI1 HMBS KIAA0196 PRKAG2 HSD17B4 KIF21A PTEN HSN1B L1CAM RBCK1 IARS2 LAMB2 RET IGHMBP2 LARGE RMND1 KCNJ10 MCCC2 SCN4A KIF5A MRE11A SERAC1 LRSAM1 MRPL3 SGCA LYST MTO1 SIL1 MANBA MTPAP SPEG MARS MTTP STAC3 MTATP6 MUSK STIM1 MYH14 MYBPC3 SYNE1 MYOT MYH3 SYNE2 NAMSD MYH8 TAZ NF2 NF1 TIA1 NGLY1 NIPA1 TMEM43 NMSR NOP56 TNPO3 NOTCH3 OPTN TNXB OPA1 PDSS2 TPM2 OPA3 PDYN TRPV4 OTOF PFN1 UBA1 PDK3 PHKA2 VCP PDSS1 PHKG2 XDH PEX10 PHOX2A ACADS PEX2 PIP5K1C ACADVL PMM2 PLEC ACTA1 PNPLA6 PLP1 AGL PPOX POMGNT1 AMPD1 PRICKLE1 -
Deconstructing Sarcomeric Structure–Function Relations in Titin-Bioid Knock-In Mice
ARTICLE https://doi.org/10.1038/s41467-020-16929-8 OPEN Deconstructing sarcomeric structure–function relations in titin-BioID knock-in mice Franziska Rudolph1, Claudia Fink1, Judith Hüttemeister1, Marieluise Kirchner2, Michael H. Radke 1,3, Jacobo Lopez Carballo1, Eva Wagner4,5,6, Tobias Kohl4,5,6, Stephan E. Lehnart 4,5,6, Philipp Mertins 2,7 & ✉ Michael Gotthardt 1,3,8 Proximity proteomics has greatly advanced the analysis of native protein complexes and 1234567890():,; subcellular structures in culture, but has not been amenable to study development and disease in vivo. Here, we have generated a knock-in mouse with the biotin ligase (BioID) inserted at titin’s Z-disc region to identify protein networks that connect the sarcomere to signal transduction and metabolism. Our census of the sarcomeric proteome from neonatal to adult heart and quadriceps reveals how perinatal signaling, protein homeostasis and the shift to adult energy metabolism shape the properties of striated muscle cells. Mapping biotinylation sites to sarcomere structures refines our understanding of myofilament dynamics and supports the hypothesis that myosin filaments penetrate Z-discs to dampen contraction. Extending this proof of concept study to BioID fusion proteins generated with Crispr/CAS9 in animal models recapitulating human pathology will facilitate the future analysis of molecular machines and signaling hubs in physiological, pharmacological, and disease context. 1 Neuromuscular and Cardiovascular Cell Biology, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert Rössle Strasse, 1013125 Berlin, Germany. 2 Proteomics Platform, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, Robert Rössle Strasse, 1013125 Berlin, Germany. 3 DZHK (German Center for Cardiovascular Research), Partner Site Berlin, Berlin, Germany. -
Cldn19 Clic2 Clmp Cln3
NewbornDx™ Advanced Sequencing Evaluation When time to diagnosis matters, the NewbornDx™ Advanced Sequencing Evaluation from Athena Diagnostics delivers rapid, 5- to 7-day results on a targeted 1,722-genes. A2ML1 ALAD ATM CAV1 CLDN19 CTNS DOCK7 ETFB FOXC2 GLUL HOXC13 JAK3 AAAS ALAS2 ATP1A2 CBL CLIC2 CTRC DOCK8 ETFDH FOXE1 GLYCTK HOXD13 JUP AARS2 ALDH18A1 ATP1A3 CBS CLMP CTSA DOK7 ETHE1 FOXE3 GM2A HPD KANK1 AASS ALDH1A2 ATP2B3 CC2D2A CLN3 CTSD DOLK EVC FOXF1 GMPPA HPGD K ANSL1 ABAT ALDH3A2 ATP5A1 CCDC103 CLN5 CTSK DPAGT1 EVC2 FOXG1 GMPPB HPRT1 KAT6B ABCA12 ALDH4A1 ATP5E CCDC114 CLN6 CUBN DPM1 EXOC4 FOXH1 GNA11 HPSE2 KCNA2 ABCA3 ALDH5A1 ATP6AP2 CCDC151 CLN8 CUL4B DPM2 EXOSC3 FOXI1 GNAI3 HRAS KCNB1 ABCA4 ALDH7A1 ATP6V0A2 CCDC22 CLP1 CUL7 DPM3 EXPH5 FOXL2 GNAO1 HSD17B10 KCND2 ABCB11 ALDOA ATP6V1B1 CCDC39 CLPB CXCR4 DPP6 EYA1 FOXP1 GNAS HSD17B4 KCNE1 ABCB4 ALDOB ATP7A CCDC40 CLPP CYB5R3 DPYD EZH2 FOXP2 GNE HSD3B2 KCNE2 ABCB6 ALG1 ATP8A2 CCDC65 CNNM2 CYC1 DPYS F10 FOXP3 GNMT HSD3B7 KCNH2 ABCB7 ALG11 ATP8B1 CCDC78 CNTN1 CYP11B1 DRC1 F11 FOXRED1 GNPAT HSPD1 KCNH5 ABCC2 ALG12 ATPAF2 CCDC8 CNTNAP1 CYP11B2 DSC2 F13A1 FRAS1 GNPTAB HSPG2 KCNJ10 ABCC8 ALG13 ATR CCDC88C CNTNAP2 CYP17A1 DSG1 F13B FREM1 GNPTG HUWE1 KCNJ11 ABCC9 ALG14 ATRX CCND2 COA5 CYP1B1 DSP F2 FREM2 GNS HYDIN KCNJ13 ABCD3 ALG2 AUH CCNO COG1 CYP24A1 DST F5 FRMD7 GORAB HYLS1 KCNJ2 ABCD4 ALG3 B3GALNT2 CCS COG4 CYP26C1 DSTYK F7 FTCD GP1BA IBA57 KCNJ5 ABHD5 ALG6 B3GAT3 CCT5 COG5 CYP27A1 DTNA F8 FTO GP1BB ICK KCNJ8 ACAD8 ALG8 B3GLCT CD151 COG6 CYP27B1 DUOX2 F9 FUCA1 GP6 ICOS KCNK3 ACAD9 ALG9 -
2021 Code Changes Reference Guide
Boston University Medical Group 2021 CPT Code Changes Reference Guide Page 1 of 51 Background Current Procedural Terminology (CPT) was created by the American Medical Association (AMA) in 1966. It is designed to be a means of effective and dependable communication among physicians, patients, and third-party payers. CPT provides a uniform coding scheme that accurately describes medical, surgical, and diagnostic services. CPT is used for public and private reimbursement systems; development of guidelines for medical care review; as a basis for local, regional, and national utilization comparisons; and medical education and research. CPT Category I codes describe procedures and services that are consistent with contemporary medical practice. Category I codes are five-digit numeric codes. CPT Category II codes facilitate data collection for certain services and test results that contribute to positive health outcomes and quality patient care. These codes are optional and used for performance management. They are alphanumeric five-digit codes with the alpha character F in the last position. CPT Category III codes represent emerging technologies. They are alphanumeric five-digit codes with the alpha character T in the last position. The CPT Editorial Panel, appointed by the AMA Board of Trustees, is responsible for maintaining and updating the CPT code set. Purpose The AMA makes annual updates to the CPT code set, effective January 1. These updates include deleted codes, revised codes, and new codes. It’s important for providers to understand the code changes and the impact those changes will have to systems, workflow, reimbursement, and RVUs. This document is meant to assist you with this by providing a summary of the changes; a detailed breakdown of this year’s CPT changes by specialty, and HCPCS Updates for your reference. -
Rashid Thesis 2015
Protein Profile and Directed Gene Expression of Developing C2C12 cells By Susan Rashid Submitted in Partial Fulfillment of the Requirements For the Degree of Master of Science In the Biological Sciences Program YOUNGSTOWN STATE UNIVERSITY August 3, 2015 Protein Profile and Directed Gene Expression of Developing C2C12 cells Susan Rashid I hereby release this thesis to the public. I understand that this will be made available from the OhioLINK ETD Center and the Maag Library Circulation Desk for public access. I also authorize the University or other individuals to make copies of this thesis as needed for scholarly research. Signature: ___________________________________________________ Susan Rashid, Student Date Approvals: ___________________________________________________ Dr. Gary Walker, Thesis Advisor 'ate ___________________________________________________ Dr. Jonathan Caguiat, Committee Member Date ___________________________________________________ Dr. David Asch, Committee Member Date ___________________________________________________ Dr. Sal Sanders, Associate Dean, Graduate Studies Date ABSTRACT Myogenesis is a tightly regulated process resulting in unique structures called myotubes or myofibers, which compose skeletal muscle. Myotubes are multi-nucleated fibers containing a functional unit composed of cytoskeletal proteins called the sarcomere. The specific arrangement of these proteins in the sarcomere works to contract and relax muscles. During embryonic and post-embryonic development, fluctuations in expression of growth factors throughout the program account for the dramatic structural changes from cell to mature muscle fiber. In vivo, these growth factors are strictly spatiotemporally regulated according to a ‘myogenic program.’ In order to assess the dynamics of protein expression throughout this program, we conducted a time course study using the mouse myoblast cell line C2C12, in which cells were allowed to differentiate and insoluble protein fractions were collected at seven time points. -
Full Disclosure Forms
Expanding genotype/phenotype of neuromuscular diseases by comprehensive target capture/NGS Xia Tian, PhD* ABSTRACT * Wen-Chen Liang, MD Objective: To establish and evaluate the effectiveness of a comprehensive next-generation * Yanming Feng, PhD sequencing (NGS) approach to simultaneously analyze all genes known to be responsible for Jing Wang, MD the most clinically and genetically heterogeneous neuromuscular diseases (NMDs) involving spi- Victor Wei Zhang, PhD nal motoneurons, neuromuscular junctions, nerves, and muscles. Chih-Hung Chou, MS Methods: All coding exons and at least 20 bp of flanking intronic sequences of 236 genes causing Hsien-Da Huang, PhD NMDs were enriched by using SeqCap EZ solution-based capture and enrichment method fol- Ching Wan Lam, PhD lowed by massively parallel sequencing on Illumina HiSeq2000. Ya-Yun Hsu, PhD ; 3 Thy-Sheng Lin, MD Results: The target gene capture/deep sequencing provides an average coverage of 1,000 per Wan-Tzu Chen, MS nucleotide. Thirty-five unrelated NMD families (38 patients) with clinical and/or muscle pathologic Lee-Jun Wong, PhD diagnoses but without identified causative genetic defects were analyzed. Deleterious mutations Yuh-Jyh Jong, MD were found in 29 families (83%). Definitive causative mutations were identified in 21 families (60%) and likely diagnoses were established in 8 families (23%). Six families were left without diagnosis due to uncertainty in phenotype/genotype correlation and/or unidentified causative Correspondence to genes. Using this comprehensive panel, we not only identified mutations in expected genes but Dr. Wong: also expanded phenotype/genotype among different subcategories of NMDs. [email protected] or Dr. Jong: Conclusions: Target gene capture/deep sequencing approach can greatly improve the genetic [email protected] diagnosis of NMDs. -
Arthrogryposis Infosheet 6-10-19
Next Generation Sequencing Panel for Distal Arthrogryposes Arthrogryposis is a term used to describe multiple congenital contractures that affect two or more different areas of the body (1). Distal Arthrogryposes are a group of autosomal dominant disorders that are mainly characterized by the involvement of the distal parts of the limbs without primary neurological and/or muscle disease. Findings include a consistent pattern of hand and foot involvement, limited involvement of proximal Joints and variable expressivity (1). Our Distal Arthrogryposes Panel includes analysis of the 11 genes listed below. Distal Arthrogryposes Panel CHST14 MYH3 TNNI2 ECEL1 MYH8 TNNT3 FBN2 NALCN TPM2 MYBPC1 PIEZO2 Genes and Associated Inheritance Clinical Features/Molecular Pathology Disorder CHST14 [OMIM#603967] AR Sonoda et al, 2000 identified two brothers with multiple distal arthrogyposis, peculiar facial appearance, cleft palate, short stature, hydronephrosis, retention Ehlers-Danlos syndrome, testis, and normal intelligence (2). Subsequent analysis of the CHST14 gene musculocontractural type identified a homozygous missense mutation in these individuals. Mutations in [OMIM#601776] CHST14 are implicated in Ehlers-Danlos syndrome, musculocontractural type, which is characterized by distinctive craniofacial dysmorphism, congenital contractures of thumbs and fingers, clubfeet, severe kyphoscoliosis, muscular hypotonia, hyperextensible thin skin with easy bruisability and scarring, wrinkled palms, Joint hypermbolility and ocular involvement. ECEL1 [OMIM#605896] AR McMillin et al, 2013, identified mutations in ECEL1 in five out of seven families with DA5D (3). Missense, frameshift, in-frame deletions and splicing mutations Arthrogryposis, distal, type 5D have all been reported. ECEL1 encodes a neuronal endopeptidase and is [OMIM#615065] expressed in the brain and peripheral nerves (3). -
Understanding Lamin A/C and Its Roles in Disease
UNDERSTANDING LAMIN A/C AND ITS ROLES IN DISEASE PATHOLOGIES AUDREY WANG SHIMEI BSC (HONS.), NANYANG TECHNOLOGICAL UNIVERSITY A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF BIOLOGICAL SCIENCES NATIONAL UNIVERSITY OF SINGAPORE 2014 i ii ACKNOWLEDGEMENTS I would like to express my sincere gratitude to Professor Colin L. Stewart (THE BOSS) for his continuous support of my PhD study. His guidance, motivation and most importantly, his quirky sense of humour have made these six years a great learning journey. His unsurpassed knowledge of lamins has opened my eyes to the world of nuclear dynamics. His exquisite taste in excellent wines, good food and foresight in choosing awesome people for the group made everything better. I would like to thank my mentor Dr. Henning Horn, who has been a great teacher to me on both academic and personal level. I’m extremely grateful to him for all his advice at work and personal matters, through good and difficult times. I also thank each and everyone in the BS lab for their great advice, support and friendship. I am very blessed to be in this lab and could not have asked for better folks to work with. In particular, Alex, Hen, Rafidah, Xiaoqian, Esther and Gracy who have helped in more ways than one, and Tinka, Dave, Anna for helping to read through bits and pieces of this thesis. I also must thank my collaborators from Ludwig-Maximilians University Munich: the late Prof Boris Joffe whom, sadly, I never met in person, and a very kind and brilliant scientist, Dr Irina Solovei. -
Clinical, Pathological and Genetic Characteristics of Autosomal Dominant Inherited Dynamin 2 Centronuclear Myopathy
MOLECULAR MEDICINE REPORTS 13: 4273-4278, 2016 Clinical, pathological and genetic characteristics of autosomal dominant inherited dynamin 2 centronuclear myopathy XINHONG LIU1,2, HUAMIN WU3, JIAN GONG4, TAO WANG2 and CHUANZHU YAN1 1Department of Neurology, Qilu Hospital of Shandong University, Jinan, Shandong 250012; Departments of 2Neurology, 3Radiology and 4Digestive System, Tai'an Central Hospital, Tai'an, Shandong 271000, P.R. China Received February 21, 2015; Accepted December 18, 2015 DOI: 10.3892/mmr.2016.5047 Abstract. The aim of the present study was to report on a the myotubularin 1 gene (MTM1) (2). A third gene, associ- family with pathologically and genetically diagnosed auto- ated with autosomal recessive inherited CNM, is bridging somal dominant inherited centronuclear myopathy (CNM). In integrator 1 (3). addition, this study aimed to investigate the clinical, patho- Previous studies on DNM2-associated CNM logical and molecular genetic characteristics of the disease. (DNM2 -CNM) cases have demonstrated that it can range from This pedigree was traced back three generations, four patients severe neonatal onset to mild adult onset, and the severity of underwent neurological examination, two patients underwent the clinical manifestations vary (4-7). The majority of patients muscle biopsy, and eight family members were subjected to exhibit distal or proximal muscle weakness as a first symptom, dynamin 2 (DNM2) gene mutation analysis. DNM2 mutations presenting as general muscle weakness, eyelid drooping, were detected in seven family members, of which four patients extraocular muscle paralysis, high arch palate, contracture of exhibited DNM2 mutation‑specific clinical and pathological the Achilles tendon, trismus, and reduction or lack of tendon features.