Sorting out Functions of Sirtuins in Cancer
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Sirna Interference Or Mirna Mimicry Peipei Wang1,2; Yue Zhou, Ph.D.1,2; Arthur M
Theranostics 2021, Vol. 11, Issue 18 8771 Ivyspring International Publisher Theranostics 2021; 11(18): 8771-8796. doi: 10.7150/thno.62642 Review Effective tools for RNA-derived therapeutics: siRNA interference or miRNA mimicry Peipei Wang1,2; Yue Zhou, Ph.D.1,2; Arthur M. Richards, M.D., Ph.D.1,2,3 1. Cardiovascular Research Institute, Yong Loo Lin School of Medicine, National University of Singapore, 117599 Singapore. 2. Department of Medicine, National University Health System, 119228 Singapore. 3. Christchurch Heart Institute, Department of Medicine, University of Otago Christchurch, New Zealand. Corresponding author: Peipei Wang, MD, PhD, Cardiovascular Research Institute, Department of Medicine, Yong Loo Lin School of Medicine, National University Health System, National University of Singapore, Centre for Translational Medicine, MD6, #08-01, 14 Medical Drive, Singapore 117599. Phone: (65) 81613586; Fax: (65) 6775-9715; E-mail: [email protected]. © The author(s). This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. Received: 2021.05.12; Accepted: 2021.07.30; Published: 2021.08.11 Abstract The approval of the first small interfering RNA (siRNA) drug Patisiran by FDA in 2018 marks a new era of RNA interference (RNAi) therapeutics. MicroRNAs (miRNA), an important post-transcriptional gene regulator, are also the subject of both basic research and clinical trials. Both siRNA and miRNA mimics are ~21 nucleotides RNA duplexes inducing mRNA silencing. Given the well performance of siRNA, researchers ask whether miRNA mimics are unnecessary or developed siRNA technology can pave the way for the emergence of miRNA mimic drugs. -
Genetic Determinants Underlying Rare Diseases Identified Using Next-Generation Sequencing Technologies
Western University Scholarship@Western Electronic Thesis and Dissertation Repository 8-2-2018 1:30 PM Genetic determinants underlying rare diseases identified using next-generation sequencing technologies Rosettia Ho The University of Western Ontario Supervisor Hegele, Robert A. The University of Western Ontario Graduate Program in Biochemistry A thesis submitted in partial fulfillment of the equirr ements for the degree in Master of Science © Rosettia Ho 2018 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Medical Genetics Commons Recommended Citation Ho, Rosettia, "Genetic determinants underlying rare diseases identified using next-generation sequencing technologies" (2018). Electronic Thesis and Dissertation Repository. 5497. https://ir.lib.uwo.ca/etd/5497 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. Abstract Rare disorders affect less than one in 2000 individuals, placing a huge burden on individuals, families and the health care system. Gene discovery is the starting point in understanding the molecular mechanisms underlying these diseases. The advent of next- generation sequencing has accelerated discovery of disease-causing genetic variants and is showing numerous benefits for research and medicine. I describe the application of next-generation sequencing, namely LipidSeq™ ‒ a targeted resequencing panel for the identification of dyslipidemia-associated variants ‒ and whole-exome sequencing, to identify genetic determinants of several rare diseases. Utilization of next-generation sequencing plus associated bioinformatics led to the discovery of disease-associated variants for 71 patients with lipodystrophy, two with early-onset obesity, and families with brachydactyly, cerebral atrophy, microcephaly-ichthyosis, and widow’s peak syndrome. -
Activation of Nuclear Factor-Kappa B Signalling Promotes Cellular Senescence
Oncogene (2011) 30, 2356–2366 & 2011 Macmillan Publishers Limited All rights reserved 0950-9232/11 www.nature.com/onc ORIGINAL ARTICLE Activation of nuclear factor-kappa B signalling promotes cellular senescence E Rovillain1, L Mansfield1, C Caetano1, M Alvarez-Fernandez2, OL Caballero3, RH Medema2, H Hummerich4 and PS Jat1 1Department of Neurodegenerative Disease, UCL Institute of Neurology, London, UK; 2Department of Medical Oncology, University Medical Center, Utrecht, The Netherlands; 3Ludwig Institute for Cancer Research Ltd, New York, NY, USA and 4MRC Prion Unit, UCL Institute of Neurology, London, UK Cellular senescence is a programme of irreversible cell of intrinsic and extrinsic stimuli including progressive cycle arrest that normal cells undergo in response to shortening of telomeres or changes in telomeric struc- progressive shortening of telomeres, changes in telomeric ture or other forms of genotoxic stress such as oncogene structure, oncogene activation or oxidative stress. The activation, DNA damage or oxidative stress resulting in underlying signalling pathways, of major clinicopatholo- a DNA damage response and growth arrest via gical relevance, are unknown. We combined genome-wide activation of the p53 tumour suppressor (Ben-Porath expression profiling with genetic complementation to and Weinberg, 2005; Campisi and d’Adda di Fagagna, identify genes that are differentially expressed when 2007; Adams, 2009). Activation of p53 induces p21CIP1, conditionally immortalised human fibroblasts undergo which prevents cyclin/cdk complexes from phosphor- senescence upon activation of the p16-pRB and p53-p21 ylating the RB family of proteins, thereby activating the tumour suppressor pathways. This identified 816 up and pRB tumour suppressor pathway (Ben-Porath and 961 downregulated genes whose expression was reversed Weinberg, 2005; Campisi and d’Adda di Fagagna, when senescence was bypassed. -
Selection Signatures in Two Oldest Russian Native Cattle Breeds Revealed Using High- Density Single Nucleotide Polymorphism Analysis
PLOS ONE RESEARCH ARTICLE Selection signatures in two oldest Russian native cattle breeds revealed using high- density single nucleotide polymorphism analysis Natalia Anatolievna Zinovieva1*, Arsen Vladimirovich Dotsev1, Alexander Alexandrovich Sermyagin1, Tatiana Evgenievna Deniskova1, Alexandra 1 1 2 Sergeevna Abdelmanova , Veronika Ruslanovna KharzinovaID , Johann SoÈ lkner , a1111111111 Henry Reyer3, Klaus Wimmers3, Gottfried Brem1,4 a1111111111 a1111111111 1 L.K. Ernst Federal Science Center for Animal Husbandry, Federal Agency of Scientific Organizations, settl. Dubrovitzy, Podolsk Region, Moscow Province, Russia, 2 Division of Livestock Sciences, University of a1111111111 Natural Resources and Life Sciences, Vienna, Austria, 3 Institute of Genome Biology, Leibniz Institute for a1111111111 Farm Animal Biology [FBN], Dummerstorf, Germany, 4 Institute of Animal Breeding and Genetics, University of Veterinary Medicine [VMU], Vienna, Austria * [email protected] OPEN ACCESS Citation: Zinovieva NA, Dotsev AV, Sermyagin AA, Abstract Deniskova TE, Abdelmanova AS, Kharzinova VR, et al. (2020) Selection signatures in two oldest Native cattle breeds can carry specific signatures of selection reflecting their adaptation to Russian native cattle breeds revealed using high- the local environmental conditions and response to the breeding strategy used. In this density single nucleotide polymorphism analysis. study, we comprehensively analysed high-density single nucleotide polymorphism (SNP) PLoS ONE 15(11): e0242200. https://doi.org/ genotypes -
A Review of the Recent Advances Made with SIRT6 and Its Implications on Aging Related Processes, Major Human Diseases, and Possible Therapeutic Targets
biomolecules Review A Review of the Recent Advances Made with SIRT6 and its Implications on Aging Related Processes, Major Human Diseases, and Possible Therapeutic Targets Rubayat Islam Khan †, Saif Shahriar Rahman Nirzhor † and Raushanara Akter * Department of Pharmacy, BRAC University, 1212 Dhaka, Bangladesh; [email protected] (R.I.K.); [email protected] (S.S.R.N.) * Correspondence: [email protected]; Tel.: +880-179-8321-273 † These authors contributed equally to this work. Received: 10 June 2018; Accepted: 26 June 2018; Published: 29 June 2018 Abstract: Sirtuin 6 (SIRT6) is a nicotinamide adenine dinucleotide+ (NAD+) dependent enzyme and stress response protein that has sparked the curiosity of many researchers in different branches of the biomedical sciences. A unique member of the known Sirtuin family, SIRT6 has several different functions in multiple different molecular pathways related to DNA repair, glycolysis, gluconeogenesis, tumorigenesis, neurodegeneration, cardiac hypertrophic responses, and more. Only in recent times, however, did the potential usefulness of SIRT6 come to light as we learned more about its biochemical activity, regulation, biological roles, and structure Frye (2000). Even until very recently, SIRT6 was known more for chromatin signaling but, being a nascent topic of study, more information has been ascertained and its potential involvement in major human diseases including diabetes, cancer, neurodegenerative diseases, and heart disease. It is pivotal to explore the mechanistic workings -
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Published OnlineFirst July 22, 2014; DOI: 10.1158/1535-7163.MCT-14-0209 Molecular Cancer Large Molecule Therapeutics Therapeutics Systemic Delivery of a miR34a Mimic as a Potential Therapeutic for Liver Cancer Christopher L. Daige, Jason F. Wiggins, Leslie Priddy, Terri Nelligan-Davis, Jane Zhao, and David Brown Abstract miR34a is a tumor-suppressor miRNA that functions within the p53 pathway to regulate cell-cycle progression and apoptosis. With apparent roles in metastasis and cancer stem cell development, miR34a provides an interesting opportunity for therapeutic development. A mimic of miR34a was complexed with an amphoteric liposomal formulation and tested in two different orthotopic models of liver cancer. Systemic dosing of the formulated miR34a mimic increased the levels of miR34a in tumors by approximately 1,000-fold and caused statistically significant decreases in the mRNA levels of several miR34a targets. The administration of the formulated miR34a mimic caused significant tumor growth inhibition in both models of liver cancer, and tumor regression was observed in more than one third of the animals. The antitumor activity was observed in the absence of any immunostimulatory effects or dose-limiting toxicities. Accumulation of the formulated miR34a mimic was also noted in the spleen, lung, and kidney, suggesting the potential for therapeutic use in other cancers. Mol Cancer Ther; 13(10); 2352–60. Ó2014 AACR. Introduction with orthotopic Hep3B and HuH7 liver cancer xenografts. The development of lipid nanoparticle technologies Systemic delivery of the encapsulated miR34a mimic that provide efficient delivery of RNA oligonucleotides reduced the expression levels of several miR34a target to hepatocytes and liver tumors (1) has created an oppor- mRNAs and caused significant growth inhibition and tunity for RNAi-based therapies. -
Mirnas As Biomarkers for Prostate Cancer Progression
Virginia Commonwealth University VCU Scholars Compass Theses and Dissertations Graduate School 2015 MIRNAS AS BIOMARKERS FOR PROSTATE CANCER PROGRESSION Gene C. Clark Virginia Commonwealth University Follow this and additional works at: https://scholarscompass.vcu.edu/etd Part of the Diagnosis Commons © The Author Downloaded from https://scholarscompass.vcu.edu/etd/3954 This Thesis is brought to you for free and open access by the Graduate School at VCU Scholars Compass. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. MIRNAS AS BIOMARKERS FOR PROSTATE CANCER PROGRESSION A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Biochemistry at Virginia Commonwealth University By Gene Chatman Clark B. S. 2012, Virginia Polytechnic Institute Director: Zendra E. Zehner Professor, Department of Biochemistry Virginia Commonwealth University Richmond, Virginia July 22, 2015 Acknowledgement Firstly, I would like to thank the many people here at VCU have inexplicably taken a chance on me. This includes, but could not possibly be limited to, Dr. Kimberly Jefferson who let me work in her lab when I was just a non-degree seeking student, Dr. Shirley Taylor who successfully encouraged me to pursue my love of research, and Dr. Louis DeFelice who suggested that I apply to the Pre-Medical Certificate Program here at VCU. I would also like to thank my amazing lab mates, Qianni Wu and Rhonda Daniel, whose insight and support were invaluable to this project. I have been lucky to have had them as partners and as friends. -
Cell Migration: How Neutrophils Set Their Compass
RESEARCH HIGHLIGHTS IN BRIEF CELL MIGRATION How neutrophils set their compass Sustained directionality is an essential component of successful chemotaxis. Here, the authors show that the G protein Gαi and the mammalian homologue of the Drosophila melanogaster polarity protein Inscuteable (known as MINSC) are important for the maintenance of polarity and directionality during neutrophil chemotaxis. They observed that Gαi (which is released from Gβγ following ligand binding) accumulates at the leading edge of the cell. Gαi interacts directly with AGS3 or LGN, which themselves are bound to MINSC, recruiting it to this part of the cell. Moreover, MINSC is bound to the polarity complex PAR3–PAR6– aPKC, and this interaction targets the complex to the leading edge, thus establishing polarity. Notably, MINSC-deficient neutrophils, or neutrophils in which aPKC was blocked, showed normal motility but lacked directionality in their chemotaxis. ORIGINAL RESEARCH PAPER Kamakura, S. et al. The cell polarity protein mInsc regulates neutrophil chemotaxis via a noncanonical G protein signaling pathway. Dev. Cell http://dx.doi.org/10.1016/j.devcel.2013.06.008 (2013) DNA DAMAGE Facilitating repair The repair of DNA double-strand breaks (DSBs) can be hindered by the inability of repair factors to access damage sites in the tightly packaged chromatin. This study identifies a key role for the deacetylase sirtuin 6 (SIRT6) in facilitating chromatin relaxation and promoting repair. Toiber et al. observed that SIRT6 is rapidly recruited to DSBs, with much faster kinetics than previously reported. SIRT6 was shown to target the chromatin remodelling factor SNF2H to these sites and accelerate its association with them, as well as to deacetylate histone 3 at Lys56 (H3K56), which was required for SNF2H-mediated chromatin relaxation. -
Evaluation of Pre-Mir-34A Rs72631823 Single Nucleotide Polymorphism in Triple Negative Breast Cancer: a Case-Control Study
www.oncotarget.com Oncotarget, 2018, Vol. 9, (No. 97), pp: 36906-36913 Research Paper Evaluation of pre-mir-34a rs72631823 single nucleotide polymorphism in triple negative breast cancer: A case-control study Despoina Kalapanida1, Flora Zagouri1, Maria Gazouli2,3, Eleni Zografos2,3, Constantine Dimitrakakis4, Spyridon Marinopoulos4, Aris Giannos4, Theodoros N. Sergentanis1, Efstathios Kastritis1, Evangelos Terpos1 and Meletios-Athanasios Dimopoulos1 1Department of Clinical Therapeutics, Alexandra Hospital, Medical School, University of Athens, Athens, Greece 2Department of Basic Medical Sciences, Laboratory of Biology, University of Athens School of Medicine, Athens, Greece 3Laboratory of Cell and Gene Therapy, Biomedical Research Foundation of the Academy of Athens, Athens, Greece 4Department of Obstetrics and Gynaecology, Alexandra Hospital, Medical school, University of Athens, Athens, Greece Correspondence to: Flora Zagouri, email: [email protected] Keywords: SNPs; pre-miR-34a; miRNA; triple negative breast cancer; biomarker Received: September 13, 2018 Accepted: November 03, 2018 Published: December 11, 2018 Copyright: Kalapanida et al. This is an open-access article distributed under the terms of the Creative Commons Attribution Li- cense 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Aim: The purpose of this study is to evaluate the role of pre-miR34a rs72631823 as potential risk factor and/or prognostic marker in patients with triple negative breast cancer. Methods: 114 samples of DNA from paraffin embedded breast normal tissues of patients with triple negative breast cancer and 124 samples of healthy controls were collected and analyzed for pre-miR34a rs72631823 polymorphism. Results: Pre-miR34a rs72631823 A allele was associated with increased TNBC risk both in univariate and multivariate analysis. -
In Silico Analysis of Polymorphisms in Micrornas That Target Genes Affecting Aerobic Glycolysis
Original Article Page 1 of 8 In silico analysis of polymorphisms in microRNAs that target genes affecting aerobic glycolysis Padmanaban S. Suresh1, Thejaswini Venkatesh2, Rie Tsutsumi3 1Department of Biosciences, Mangalore University, Mangalagangotri, Mangalore 574 199, Karnataka, India; 2Nitte University Centre for Science Education and Research, Nitte University, Derlakatte, Mangalore, Karnataka, India; 3Department of Nutrition and Metabolism, Institute of Biomedical Science, Tokushima University, Tokushima, Japan Contributions: (I) Conception and design: PS Suresh, T Venkatesh; (II) Administrative support: None; (III) Provision of study materials or patients: None; (IV) Collection and assembly of data: PS Suresh; (V) Data analysis and interpretation: PS Suresh; (VI) Manuscript writing: All authors; (VII) Final approval of manuscript: All authors. Correspondence to: Padmanaban S. Suresh. Department of Biosciences, Mangalore University, Mangalagangotri, Mangalore 574 199, Karnataka, India. Email: [email protected]. Background: Cancer cells preferentially metabolize glucose through aerobic glycolysis, an observation known as the Warburg effect. Recently, studies have deciphered the role of oncogenes and tumor suppressor genes in regulating the Warburg effect. Furthermore, mutations in glycolytic enzymes identified in various cancers highlight the importance of the Warburg effect at the molecular and cellular level. MicroRNAs (miRNAs) are non-coding RNAs that posttranscriptionally regulate gene expression and are dysregulated in the pathogenesis of various types of human cancers. Single nucleotide polymorphisms (SNPs) in miRNA genes may affect miRNA biogenesis, processing, function, and stability and provide additional complexity in the pathogenesis of cancer. Moreover, mutations in miRNA target sequences in target mRNAs can affect expression. Methods: In silico analysis and cataloguing polymorphisms in miRNA genes that target genes directly or indirectly controlling aerobic glycolysis was carried out using different publically available databases. -
Exosomal Micrornas: Pleiotropic Impacts on Breast Cancer Metastasis and Their Clinical Perspectives
biology Review Exosomal microRNAs: Pleiotropic Impacts on Breast Cancer Metastasis and Their Clinical Perspectives Li-Bo Tang 1,2,† , Shu-Xin Ma 3,†, Zhuo-Hui Chen 2, Qi-Yuan Huang 1,2 , Long-Yuan Wu 1,4, Yi Wang 1, Rui-Chen Zhao 1,3 and Li-Xia Xiong 1,5,* 1 Department of Pathophysiology, Basic Medical College, Nanchang University, Nanchang 330006, China; [email protected] (L.-B.T.); [email protected] (Q.-Y.H.); [email protected] (L.-Y.W.); [email protected] (Y.W.); [email protected] (R.-C.Z.) 2 Second Clinical Medical College, Nanchang University, Nanchang 330006, China; [email protected] 3 Queen Mary School, Jiangxi Medical College, Nanchang University, Nanchang 330006, China; [email protected] 4 First Clinical Medical College, Nanchang University, Nanchang 330006, China 5 Jiangxi Province Key Laboratory of Tumor Pathogenesis and Molecular Pathology, Nanchang 330006, China * Correspondence: [email protected]; Tel.: +86-791-8636-0556 † These authors contributed equally to this work. Simple Summary: This review has comprehensively summarized the most recent studies in the last few years about exosomal microRNAs on metastasis of breast cancer (BC), systematically outlined and elucidated the pleiotropic roles that exosomal microRNAs take, and discussed the specific underlying mechanisms related. Besides, we also clearly demonstrate the clinical implications of exosomal microRNAs in various aspects, including early-stage discovery of BC, systematic and Citation: Tang, L.-B.; Ma, S.-X.; Chen, targeted therapy, and the selection of anti-cancer chemo-agents. This review clarifies the scope and Z.-H.; Huang, Q.-Y.; Wu, L.-Y.; Wang, extent of current studies about the relationship between exosomal microRNAs and metastasis of Y.; Zhao, R.-C.; Xiong, L.-X. -
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