TECHNISCHE UNIVERSITÄT MÜNCHEN Lehrstuhl Für
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TECHNISCHE UNIVERSITÄT MÜNCHEN Lehrstuhl für Physiologie Differential gene expression during pre-implantation pregnancy in bos taurus Andréa Hammerle-Fickinger Vollständiger Abdruck der Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt der Technischen Universität München zur Erlangung des akademischen Grades eines Doktors der Naturwissenschaften genehmigte Dissertation. Vorsitzender: Univ.-Prof. Dr. U. M. Kulozik Prüfer der Dissertation: 1. Univ.-Prof. Dr. H. H. D. Meyer (schriftliche Beurteilung) 2. Priv.-Doz. Dr. K. Kramer 3. Univ.-Prof. Dr. M. W. Pfaffl Die Dissertation wurde am 20.02.2012 bei der Technischen Universität München eingereicht und durch die Fakultät Wissenschaftszentrum Weihenstephan für Ernährung, Landnutzung und Umwelt am 22.05.2012 angenommen. Table of Contents Table of Contents List of abbreviations .......................................................................................................... iv Zusammenfassung............................................................................................................. vi Abstract............................................................................................................................. viii 1 Introduction .................................................................................................................. 1 1.1 Bovine estrous cycle .................................................................................................. 1 1.2 Activation of the complement system during pregnancy............................................. 2 1.3 Early pregnancy in cattle and signaling responses..................................................... 4 1.4 Diapedesis: leukocytes migration from blood into milk................................................ 7 1.5 Gene expression analysis as a potential method for pregnancy diagnosis in cattle.... 8 1.6 Importance of sample processing for gene expression analysis ................................. 9 1.7 Aim of the thesis....................................................................................................... 11 2 Material and methods................................................................................................. 13 2.1 Study design of pregnancy recognition regarding the complement system activation in endometrium ............................................................................................................ 13 2.1.1 Monozygotic twin animals study ..................................................................... 13 2.1.2 Cyclic animals study....................................................................................... 13 2.1.3 In vitro co-culture of glandular epithelial and stroma cells study ..................... 14 2.1.4 Tissue sampling and RNA extraction.............................................................. 14 2.2 Study design of pregnancy recognition in peripheral blood leukocytes ..................... 14 2.2.1 Validation of blood sampling techniques......................................................... 14 2.2.2 Blood leukocytes study................................................................................... 16 2.3 Study design of pregnancy recognition in milk somatic cells..................................... 18 2.3.1 Validation of milk sampling techniques........................................................... 18 2.3.2 Milk somatic cells study.................................................................................. 19 i Table of Contents 2.4 RNA concentration and quality determination........................................................... 20 2.5 Target gene selection and primer design.................................................................. 20 2.6 Quantitative RT-PCR................................................................................................ 23 2.6.1 Gene expression analysis in endometrium ..................................................... 23 2.6.2 Gene expression analysis for validation of blood sampling............................. 23 2.6.3 Gene expression analysis on blood leukocytes and on milk somatic cells ...... 24 2.6.4 Statistical analysis of gene expression data ................................................... 25 2.7 Microarray analysis .................................................................................................. 26 2.7.1 Gene expression analysis in endometrium ..................................................... 26 2.7.2 Gene expression analysis on blood leukocytes .............................................. 26 2.8 Determination of C1Q concentration by ELISA......................................................... 27 3 Results ........................................................................................................................ 28 3.1 Analysis of pregnancy recognition regarding the complement system activation in endometrium ............................................................................................................ 28 3.1.1 Expression of complement system factors by RT-qPCR................................. 28 3.1.2 Expression of complement system factors by microarray analysis ................. 29 3.1.3 Expression of complement system factors in an in vitro co-culture system..... 29 3.2 Analysis of pregnancy recognition in peripheral blood leukocytes ............................ 31 3.2.1 Validation of blood sampling techniques......................................................... 31 3.2.2 Identification of a gene expression signature in bovine blood leukocytes ....... 37 3.3 Analysis of pregnancy recognition in milk somatic cells............................................ 45 3.3.1 Validation of milk sampling techniques........................................................... 45 3.3.2 Identification of a gene expression signature in bovine milk somatic cells ...... 50 4 Discussion .................................................................................................................. 55 4.1 Analysis of pregnancy recognition regarding the complement system activation in endometrium ............................................................................................................ 55 ii Table of Contents 4.2 Analysis of pregnancy recognition in peripheral blood leukocytes ............................ 58 4.3 Analysis of pregnancy recognition in milk somatic cells............................................ 64 5 Conclusions and perspectives.................................................................................. 69 6 References.................................................................................................................. 73 Acknowledgements........................................................................................................... 84 Scientific communication ................................................................................................. 85 Curriculum vitae ................................................................................................................ 87 Appendix............................................................................................................................ 88 iii Abbreviations List of abbreviations 18s rRNA 18S ribosomal RNA CFI complement factor I 28S rRNA 28S ribosomal RNA CK8 cytokeratin 8 ACTB actin beta CL corpus luteum AI artificial insemination Cq quantitative cycle bp base pair CR1 complement component BST2 bone marrow stromal cell receptor 1 antigen 2 CSF1 colony stimulating factor 1 C1Q complement component 1, D day of the cycle q subcomponent DF degrees of freedom C1R complement component 1, r EDTA ethylenediaminetetraacetic subcomponent acid C1S complement component 1, s F F-statistic test subcomponent FDR false discovery rate C2 complement component 2 GAPDH glyceraldehyde 3 phosphate C3 complement component 3 dehydrogenase C3AR complement component 3a GE glandular epithelial cells receptor HIS3 histone H3 C3bBb C3 convertase iC3b inactive C3b C3bBb3b C5 convertase IDO indoleamine 2,3- C4 complement component 4 dioxygenase C5 complement component 5 IFI16 interferon-induced protein C5AR complement component 5a 16 receptor IFI44 interferon-induced protein C6 complement component 6 44 C7 complement component 7 IFIT2 interferon-induced protein C8 complement component 8 with tetratricopeptide C9 complement component 9 repeats 2 CD46 membran co factor protein IFNT interferon-tau CD55 decay accelerating factor for IgG immunoglobulin G complement IgM immunoglobulin M CEL cell intensity files IL18 interleukin 18 CFB complement factor B IL1B interleukin 1 beta CFD complement factor D ISG interferon stimulated genes CFH complement factor H ISG15 ubiquitin-like modifier iv Abbreviations LH luteinizing hormone RMA robust multi-array analysis LIF leukemia inhibitory factor RNA ribonucleic acid LL leukoLOCK RNA extraction Rpm revolutions per minute method RT-qPCR quantitative reverse LY lysis RNA extraction transcription- polymerase method chain reaction MAC membrane attack complex SAM significance analysis of miRNA microRNA microarrays mRNA messenger ribonucleic acid SC stromal cells MS mean square SCC somatic cell count MX1 myxovirus resistance 1 SEM standard error of mean MX2 myxovirus resistance 2 SERPING1 serpin peptidase inhibitor, NP non-pregnant animals clade G (C1 inhibitor), nt nucleotide member 1 OAS1 2',5'-oligoadenylate SS sum of squares synthetase 1 STAT1 signal transducer and OOSP1 oocyte-secreted protein