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Fun with the discomycetes: revisiting collections of Korf’s ana- morphic Pezizales and Thaxter’s New England truffles leads to a connection between forms and the description of two new truffle species: Pachyphlodes pfisteri and P. nemoralis Rosanne HEALY Summary: Pachyphlodes is a pleiomorphic pezizalean truffle genus, originally described from Europe. Color Caroline HOBART is an important diagnostic character for the species in this genus, and is naturally, if unfortunately, obscured Genevieve E. TOCCI in dried herbarium specimens. Therefore, some notable experts have understandably misidentified some Lilla BÓNA of the species in herbaria. This study was part of a larger effort to use molecular phylogenetic analyses fol- lowed by morphological study to sort the relationships and species limits within Pachyphlodes. One clade Zsolt MERÉNYI of Pachyphlodes that we refer to here as the /nemoralis clade was previously unrecognized for its unique Aurelia PAZ CONDE spore ornamentation of coalesced spine tips present in all species in this clade studied to date. A North Ame- Matthew E. SMITH rican species was misidentified asP. melanoxanthus, while a European species was misidentified asP. citrinus, or P. ligericus. Here we describe these two species in the /nemoralis clade as P. pfisteri from North America Ascomycete.org, 7 (6) : 357-366. and P. nemoralis from Europe. We also link a mitosporic form to P. pfisteri, and revisit the concept of the mi- Novembre 2015 tosporic form called Glischroderma. We dedicate this paper to Richard P. Korf, who’s work on pezizalean ana- Mise en ligne le 30/11/2015 morphs inspired this study. Keywords: Ascomycota, Pezizales, Pachyphlodes nemoralis, pfisteri, Pachyphloeus, spore mats, Glischroderma, phylogeny. Introduction chyphlodes pfisteri, a fresh spore mat was fixed and embedded in resin following CURRY & KIMBROUGH (1983) and then 20 serial sections 3 μm thick were cut with glass knives, mounted on slides and stai- In 1994 Dr. Richard P. Korf gave a marvelous talk and paper titled ned with Toluidine Blue O. For scanning electron microscopy (SEM), “Fifty years of fun with the discomycetes and what’s left to do” (KORF, dried material was revived in 3% KOH and then gradually dehydra- 1994). This talk featured a visible mat of vegetative hyphae that is ted to absolute ethanol followed by critical point drying (CPD). CPD formed in either a discrete or indeterminate patch and that pro- pieces of gleba were placed on carbon tape on aluminum stubs, duces spores through mitosis (here after referred to as a “spore sputter coated with gold/palladium, and viewed with 10 kV on a mat”). Korf and his students collected these spore mats on soil in scanning electron microscope in the University Imaging Center at the woods around Ithaca, New York. He recognized the affiliation of the University of Minnesota, St. Paul. Voucher specimens are depo- these spore mats with the Pezizales and he tentatively identified sited in the Farlow Herbarium of Harvard University (FH), Royal Bo- them as Glischroderma Fuckel, a poorly known form genus erected tanic Garden at Kew (K), University of Lille (LIP), and University of for a spore mat described from Germany (FUCKEL, 1870: 34). His talk Florida Fungal Herbarium (FLAS). discussed the morphological ambiguity of this species (i.e. does it have a peridium?), its identity, and what was known about spore Molecular methods mats in other species that are affiliated with the Pezizales. He gave We attempted ITS and 28S rDNA sequencing for all described spe- a piece of a spore mat to Dr. Keith N. Egger for DNA sequencing and cies of Pachyphlodes. Of the twelve described species and two va- the 28S rDNA sequence was phylogenetically affiliated withScabro- rieties of Pachyphlodes, sequences were available or newly obtained pezia and Pachyphlodes (NORMAN & EGGER, 1999). Here we revisit the for all except P. saccardoi (Mattir.) Doweld, and P. melanoxanthus morphology and phylogenetic affinity of Korf’s spore mat collection subsp. xanthocarnosus (Soehner) Doweld. Sequences and morpho- and show that the sequences of this anamorphic form match the logical study of P. lateritius (Fogel & States) Doweld and P. macros- ascocarp of a new North American truffle species, Pachyphlodes pfis- porus (Calonge) Doweld 2013 revealed that they do not belong to teri sp. nov. We also describe a European relative from the same mo- Pachyphlodes sensu stricto so they are not included in these analyses. lecular phylogenetic clade Pachyphlodes nemoralis sp. nov. P. lateritius is a Geopora and P. macrosporus is a Hydnotrya. Speci- mens of P. saccardoi and P. melanoxanthus subsp. xanthocarnosus Material and Methods were available for morphological study but were too old to obtain sequences. We judged from their morphologies and the morpho- logy and sequences of P. ligericus (Tul. & C. Tul. ex Berk.) Zobel and Material studied P. austro-oregonensis (J.L. Frank & Trappe) Doweld that these species We studied fresh European and North American collections of would not be pertinent to the species we are describing here, so spore mats and ascomata as well as herbarium collections borrowed they are not included in our phylogenetic analyses or discussion. from Cornell University (CUP), Harvard University (FH), Oregon State Fresh or dried ascomata and mitosporic spore mats were placed in University (OSC), the Swedish Museum of Natural History (S), and CTAB extraction buffer and DNA was extracted using a standard the Real Jardín Botánico (MA) herbaria as well as specimens kindly chloroform method (GARDES & BRUNS, 1993). ITS and 28S rDNA was provided by Dr. James M. Trappe. All measurements are based on PCR-amplified with forward primers ITS1F, ITS5 and reverse primers material rehydrated in water (spores) or 5% KOH (to inflate asci and ITS4, LR5, and LR3 (GARDES & BRUNS, 1993; VILGALYS & HESTER, 1990; peridia). Reactions were recorded in 5% KOH and Melzer’s solution. WHITE et al., 1990). Amplicons were cleaned and sequenced bidirec- For each species description, average measurements were calcula- tionally with the same primers as for PCR. Sanger sequencing was ted based on 50 mature meiospores or mitospores and 20 asci. Ma- performed at the University of Florida Interdisciplinary Center for terial was observed in Melzer’s solution to assess the amyloid Biotechnology Research (Gainesville, FL), and at the Beckman Coul- reaction of asci. For study of the peridium in the spore mat of Pa- ter Genomics Laboratory (Danvers, MA). New sequences are depo- 357 sited in the National Center for Biotechnology Information under model chosen for analyses of the ITS alignment was TPM1uf+I, and accession numbers KT899960-KT899976, KU170603- KU170604, and the 28S alignment was GTR+I+G. Bayesian analyses were run in KU171101-KU171105. MrBayes v. 3.2.3 (HUELSENBECK & RONQUIST, 2001) for 20,000,000 gene- rations in two parallel runs, with trees sampled every 1000th gene- Phylogenetic analysis ration, and the first 25% of sampled trees discarded as burn in. Adequacy of mixing of the chains was checked in Tracer (RAMBAUT & Sequences were edited and assembled in Geneious Pro v 5.6.7 DRUMMOND, 2007). Maximum likelihood analyses were conducted (DRUMMOND et al., 2012). For both ITS and 28S, highly similar se- using RAxML-HPC2 v 8.1.11 (STAMATAKIS, 2014) with a GTR + gamma quences were found through BLAST searches in NCBI. Sequence sets model of nucleotide substitution. 1000 bootstrap iterations were for ITS and 28S were aligned separately in MAFFT v. 6.822 (KATOH & performed with rapid bootstrapping. MAFFT, RAxML, and MrBayes TOH, 2010), and manually optimized in SeAl v. 2.0a11 (RAMBAUT, 2007). analyses were carried out on XSEDE on the CIPRES Science Gateway Phylogenetic analyses included RAxML and Bayesian analyses. Priors v. 3.3 (MILLER et al., 2010). The datasets included 41 taxa and 641 sites for posterior probability were selected using the Aikake Information for the ITS alignment, and 30 taxa and 816 sites for the 28S criterion with the software package jModeltest (POSADA, 2008). The alignment. Plate 1 – Maximum likelihood phylogenetic tree based on 28S rDNA sequences of described Pachyphlodes species and undescribed species in the /nemoralis clade. The phylogeny was rooted with two species of Amylascus. Thickened branches indicate >80% ML bootstrap support and posterior probability values greater than 0.95 for Bayesian analysis. Sequences from ascomata (ASC), mitospore mats (MSM) and ecto- mycorrhizal root tips (EcM) are indicated along with GenBank accession numbers and locations of origin. Sequences in bold are K. Egger’s sequences of R.P. Korf’s spore mat (NORMAN & EGGER, 1999) and our sequence of the ascoma of P. pfisteri MES-306. Asterisks denote sequences from holotype specimens. 358 Results lanoxanthus and an undescribed species from North America refer- red to as “species 22”); and the /nemoralis clade, including only un- Of the species analyzed, three monophyletic clades were inferred described species (Pl. 1). The affiliations ofP. marroninus (Healy, from RAxML and Bayesian phylogenetic analyses of the 28S locus Bonito & Guevara) Doweld, P. carneus (Harkn.) Doweld, P. conglome- of Pachyphlodes: the /citrinus clade (including P. citrinus (Berk. & ratus (Berk. & Broome) Doweld, and P. oleiferus J. Cabero & J. Pérez Broome) Doweld, P. thysellii (W. Colgan & Trappe) Doweld, and P. vi- are unresolved within Pachyphlodes based on this limited set of taxa rescens (Gilkey) Doweld); the /melanoxanthus clade (including P. me- and the 28S locus. The 28S sequence from Korf’s spore mat from Plate 2 – Midpoint rooted phylogenetic tree based on maximum likelihood analysis of ITS rDNA sequences of taxa in the /nemoralis clade, including Pachyphlodes nemoralis, P. pfisteri, and undescribed species designated with provisional species hypothesis numbers. Thickened branches denote >70% ML bootstrap support and posterior probability values greater than 0.95 for Bayesian analysis. Sequences from as- comata (ASC), from mitospore mats (MSM) and ectomycorrhizal root tips (EcM) are indicated along with GenBank accession numbers and locations of origin.