Innate and Adaptive Immunity in Teleost Fish: a Review
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Fish Feeding and Dynamics of Soft-Sediment Mollusc Populations in a Coral Reef Lagoon
MARINE ECOLOGY PROGRESS SERIES Published March 3 Mar. Ecol. Prog. Ser. Fish feeding and dynamics of soft-sediment mollusc populations in a coral reef lagoon G. P. Jones*, D. J. Ferrelle*,P. F. Sale*** School of Biological Sciences, University of Sydney, Sydney 2006, N.S.W., Australia ABSTRACT: Large coral reef fish were experimentally excluded from enclosed plots for 2 yr to examine their effect on the dynamics of soft sediment mollusc populations from areas in One Tree lagoon (Great Barrier Reef). Three teleost fish which feed on benthic molluscs. Lethrinus nebulosus, Diagramrna pictum and Pseudocaranx dentex, were common in the vicinity of the cages. Surveys of feeding scars in the sand indicated similar use of cage control and open control plots and effective exclusion by cages. The densities of 10 common species of prey were variable between locations and among times. Only 2 species exhibited an effect attributable to feeding by fish, and this was at one location only. The effect size was small relative to the spatial and temporal variation in numbers. The power of the test was sufficient to detect effects of fish on most species, had they occurred. A number of the molluscs exhibited annual cycles in abundance, with summer peaks due to an influx of juveniles but almost total loss of this cohort in winter. There was no evidence that predation altered the size-structure of these populations. While predation by fish is clearly intense, it does not have significant effects on the demo- graphy of these molluscs. The results cast doubt on the generality of the claim that predation is an important structuring agent in tropical communities. -
Horodysky Throws Light on Fish Vision
3 Horodysky Throws Light on Fish Vision Andrij Horodysky’s research can be The research is part of an emerg- Horodysky also benefits summed up in a simple saying—what ing field called “visual ecology” that from collaborations with Char- you see is what you get. promises to throw new light on animal ter captains like Steve Wray, Horodysky, a VIMS graduate behavior and the interactions between who provide him with the fish student working with faculty members predators and prey. Horodysky and his he needs for his experiments. Drs. Rich Brill, Rob Latour, and Jack advisors are pioneers in applying this Horodysky’s preliminary Musick, is using electroretinography—a field to Bay fishes. results provide basic insight technique first developed for studying The researchers are focusing their into how Bay fishes see the human vision—to explore how fishes initial studies on recreationally impor- world. The results show that see the underwater world of Chesapeake tant Bay species such as striped bass, some species, like striped bass, Bay. weakfish, croaker, and drum. This re- are adapted to see large, swiftly Brill, an internationally recognized flects the source of their funding, which moving prey in daylight. Oth- fish physiologist who heads NOAA’s comes from the Recreational Fishing ers, like weakfish, are adapted Cooperative Marine Education and Advisory Board of the Virginia Marine to see small, sluggish prey at Research (CMER) program at VIMS, Resources Commission. The Board uses night. has recently turned his attention to the money from Virginia’s saltwater fishing He is also comparing the sensory world of fish and other marine license to fund projects that improve the types of prey that fishes are organisms. -
Transposable Elements and Teleost Migratory Behaviour
International Journal of Molecular Sciences Article Transposable Elements and Teleost Migratory Behaviour Elisa Carotti 1,†, Federica Carducci 1,†, Adriana Canapa 1, Marco Barucca 1,* , Samuele Greco 2 , Marco Gerdol 2 and Maria Assunta Biscotti 1 1 Department of Life and Environmental Sciences, Polytechnic University of Marche, Via Brecce Bianche, 60131 Ancona, Italy; [email protected] (E.C.); [email protected] (F.C.); [email protected] (A.C.); [email protected] (M.A.B.) 2 Department of Life Sciences, University of Trieste, Via L. Giorgieri, 5-34127 Trieste, Italy; [email protected] (S.G.); [email protected] (M.G.) * Correspondence: [email protected] † Equal contribution. Abstract: Transposable elements (TEs) represent a considerable fraction of eukaryotic genomes, thereby contributing to genome size, chromosomal rearrangements, and to the generation of new coding genes or regulatory elements. An increasing number of works have reported a link between the genomic abundance of TEs and the adaptation to specific environmental conditions. Diadromy represents a fascinating feature of fish, protagonists of migratory routes between marine and fresh- water for reproduction. In this work, we investigated the genomes of 24 fish species, including 15 teleosts with a migratory behaviour. The expected higher relative abundance of DNA transposons in ray-finned fish compared with the other fish groups was not confirmed by the analysis of the dataset considered. The relative contribution of different TE types in migratory ray-finned species did not show clear differences between oceanodromous and potamodromous fish. On the contrary, a remarkable relationship between migratory behaviour and the quantitative difference reported for short interspersed nuclear (retro)elements (SINEs) emerged from the comparison between anadro- mous and catadromous species, independently from their phylogenetic position. -
Should I Eat the Fish I Catch?
EPA 823-F-14-002 For More Information October 2014 Introduction What can I do to reduce my health risks from eating fish containing chemical For more information about reducing your Fish are an important part of a healthy diet. pollutants? health risks from eating fish that contain chemi- Office of Science and Technology (4305T) They are a lean, low-calorie source of protein. cal pollutants, contact your local or state health Some sport fish caught in the nation’s lakes, Following these steps can reduce your health or environmental protection department. You rivers, oceans, and estuaries, however, may risks from eating fish containing chemical can find links to state fish advisory programs Should I Eat the contain chemicals that could pose health risks if pollutants. The rest of the brochure explains and your state’s fish advisory program contact these fish are eaten in large amounts. these recommendations in more detail. on the National Fish Advisory Program website Fish I Catch? at: http://water.epa.gov/scitech/swguidance/fish- The purpose of this brochure is not to 1. Look for warning signs or call your shellfish/fishadvisories/index.cfm. discourage you from eating fish. It is intended local or state environmental health as a guide to help you select and prepare fish department. Contact them before you You may also contact: that are low in chemical pollutants. By following fish to see if any advisories are posted in these recommendations, you and your family areas where you want to fish. U.S. Environmental Protection Agency can continue to enjoy the benefits of eating fish. -
Reef-Associated Fishes Have More Maneuverable Body Shapes at a Macroevolutionary Scale
Coral Reefs https://doi.org/10.1007/s00338-020-01976-w REPORT Reef-associated fishes have more maneuverable body shapes at a macroevolutionary scale 1 1 2 2 Olivier Larouche • Bailey Benton • Katherine A. Corn • Sarah T. Friedman • 1 1 1 2 Dominique Gross • Mikayla Iwan • Brian Kessler • Christopher M. Martinez • 1 1 2 1 Sierra Rodriguez • Hannah Whelpley • Peter C. Wainwright • Samantha A. Price Received: 25 March 2020 / Accepted: 9 July 2020 Ó Springer-Verlag GmbH Germany, part of Springer Nature 2020 Abstract Marine habitats vary widely in structure, from with narrower and shallower caudal peduncles. Despite the incredibly complex coral reefs to simpler deep water and numerous evolutionary forces that may influence body open ocean habitats. Hydromechanical models of swim- shapes on a broad macroevolutionary scale, our results ming kinematics and microevolutionary studies suggest reveal differences in body shapes between reef-associated that these habitats select for different body shape charac- and non-reef species that are consistent with hydrome- teristics. Fishes living in simple habitats are predicted to chanical models of swimming kinematics as well as with experience selection for energy-efficient sustained swim- microevolutionary patterns. ming, which can be achieved by fusiform body shapes. In contrast, fishes living in complex habitats are predicted to Keywords Habitat structural complexity Á Fish body be under selection for maneuverability, which can be shapes Á Fish swimming Á Macroevolution Á Morphological enhanced by deep-bodied and laterally compressed forms. diversity To look for a signature of these processes at a broad macroevolutionary scale, we quantified the body shapes of 3322 species of marine teleostean fishes using a series of Introduction linear measurements. -
Neopterygian Fish with Secondary Sexual Characteristics Found from the Middle Triassic of China 18 February 2016
Neopterygian fish with secondary sexual characteristics found from the Middle Triassic of China 18 February 2016 Sciences, and his collaborator reported a new sexually dimorphic primitive neopterygian fish, Venusichthys comptus, based on 30 exceptionally well-preserved specimens from the Middle Triassic (Pelsonian, Anisian) Luoping Lagerstätte of eastern Yunnan, China. The discovery represents the oldest known secondary sexual characteristics in Neopterygii, and provides an important addition for understanding the behavior, reproduction, and early diversification of Neopterygii. The Luoping Lagerstätte fossil beds are composed of thinly laminated micritic limestone alternating with silty limestone, indicating a semi-enclosed intraplatform depositional environment. This new species has a blunt snout, an elongate and fusiform body, and an almost homocercal caudal fin with a forked profile. All 30 specimens represent a small- Fig.1 Female specimen of Venusichthys comptus before sized primitive neopterygian with a standard length (a) and after coated with ammonium chloride. Credit: XU ranging from 25 to 38 mm. Guanghui Secondary sexual characteristics are features that appear at sexual maturity and distinguish the two sexes of a species. Studies of secondary sexual characteristics in a species are vital for fully understanding its behavior, reproduction, and evolution. Secondary sexual characteristics are easily observed and studied in living animals, but the situation is rather more complicated in extinct animals, primarily due to inadequacies of sample size or the fragmentary nature of fossil remains. Neopterygii are the most diverse group of extant ray-finned fishes, which underwent a rapid radiation in the aftermath of end-Permian mass extinction. In a paper published online 23 January in the journal Science Bulletin, Dr. -
Rhodopsin Gene Evolution in Early Teleost Fishes
RESEARCH ARTICLE Rhodopsin gene evolution in early teleost fishes 1 2 1 Jhen-Nien Chen , Sarah Samadi , Wei-Jen ChenID * 1 Institute of Oceanography, National Taiwan University, Taipei, Taiwan, 2 Institute de SysteÂmatique, E volution, Biodiversite (ISYEB), MuseÂum National d'Histoire Naturelle±CNRS, Sorbonne UniversiteÂ, EPHE, Paris, France * [email protected] a1111111111 a1111111111 a1111111111 Abstract a1111111111 a1111111111 Rhodopsin mediates an essential step in image capture and is tightly associated with visual adaptations of aquatic organisms, especially species that live in dim light environments (e.g., the deep sea). The rh1 gene encoding rhodopsin was formerly considered a single- copy gene in genomes of vertebrates, but increasing exceptional cases have been found in teleost fish species. The main objective of this study was to determine to what extent the OPEN ACCESS visual adaptation of teleosts might have been shaped by the duplication and loss of rh1 Citation: Chen J-N, Samadi S, Chen W-J (2018) genes. For that purpose, homologous rh1/rh1-like sequences in genomes of ray-finned Rhodopsin gene evolution in early teleost fishes. PLoS ONE 13(11): e0206918. https://doi.org/ fishes from a wide taxonomic range were explored using a PCR-based method, data mining 10.1371/journal.pone.0206918 of public genetic/genomic databases, and subsequent phylogenomic analyses of the Editor: Michael Schubert, Laboratoire de Biologie retrieved sequences. We show that a second copy of the fish-specific intron-less rh1 is pres- du DeÂveloppement de Villefranche-sur-Mer, ent in the genomes of most anguillids (Elopomorpha), Hiodon alosoides (Osteoglossomor- FRANCE pha), and several clupeocephalan lineages. -
Ecomorphology of Feeding in Coral Reef Fishes
Ecomorphology of Feeding in Coral Reef Fishes Peter C. Wainwright David R. Bellwood Center for Population Biology Centre for Coral Reef Biodiversity University of California at Davis School of Marine Biology and Aquaculture Davis, California 95616 James Cook University Townsville, Queensland 4811, Australia I. Introduction fish biology. We have attempted to identify generalities, II. How Does Morphology Influence Ecology? the major patterns that seem to cut across phylogenetic III. The Biomechanical Basis of Feeding Performance and geographic boundaries. We begin by constructing IV. Ecological Consequences of Functional a rationale for how functional morphology can be used Morphology to enhance our insight into some long-standing eco- V. Prospectus logical questions. We then review the fundamental me- chanical issues associated with feeding in fishes, and the basic design features of the head that are involved in prey capture and prey processing. This sets the stage I. Introduction for a discussion of how the mechanical properties of fish feeding systems have been modified during reef fish di- nce an observer gets past the stunning coloration, versification. With this background, we consider some O surely no feature inspires wonder in coral reef of the major conclusions that have been drawn from fishes so much as their morphological diversity. From studies of reef fish feeding ecomorphology. Because of large-mouthed groupers, to beaked parrotfish, barbeled space constraints we discuss only briefly the role of goatfish, long-snouted trumpet fish, snaggle-toothed sensory modalities--vision, olfaction, electroreception, tusk fish, tube-mouthed planktivores, and fat-lipped and hearingmbut these are also significant and diverse sweet lips, coral reef fishes display a dazzling array elements of the feeding arsenal of coral reef fishes and of feeding structures. -
Fishery Science – Biology & Ecology
Fishery Science – Biology & Ecology How Fish Reproduce Illustration of a generic fish life cycle. Source: Zebrafish Information Server, University of South Carolina (http://zebra.sc.edu/smell/nitin/nitin.html) Reproduction is an essential component of life, and there are a diverse number of reproductive strategies in fishes throughout the world. In marine fishes, there are three basic reproductive strategies that can be used to classify fish. The most common reproductive strategy in marine ecosystems is oviparity. Approximately 90% of bony and 43% of cartilaginous fish are oviparous (See Types of Fish). In oviparous fish, females spawn eggs into the water column, which are then fertilized by males. For most oviparous fish, the eggs take less energy to produce so the females release large quantities of eggs. For example, a female Ocean Sunfish is able to produce 300 million eggs over a spawning cycle. The eggs that become fertilized in oviparous fish may spend long periods of time in the water column as larvae before settling out as juveniles. An advantage of oviparity is the number of eggs produced, because it is likely some of the offspring will survive. However, the offspring are at a disadvantage because they must go through a larval stage in which their location is directed by oceans currents. During the larval stage, the larvae act as primary consumers (See How Fish Eat) in the food web where they must not only obtain food but also avoid predation. Another disadvantage is that the larvae might not find suitable habitat when they settle out of the ~ Voices of the Bay ~ [email protected] ~ http://sanctuaries.noaa.gov/education/voicesofthebay.html ~ (Nov 2011) Fishery Science – Biology & Ecology water column. -
Teleost Radiation Teleost Monophyly
Teleost Radiation Teleostean radiation - BIG ~ 20,000 species. Others put higher 30,000 (Stark 1987 Comparative Anatomy of Vertebrates) About 1/2 living vertebrates = teleosts Tetrapods dominant land vertebrates, teleosts dominate water. First = Triassic 240 my; Originally thought non-monophyletic = many independent lineages derived from "pholidophorid" ancestry. More-or-less established teleostean radiation is true monophyletic group Teleost Monophyly • Lauder and Liem support this notion: • 1. Mobile premaxilla - not mobile like maxilla halecostomes = hinged premaxilla modification enhancing suction generation. Provides basic structural development of truly mobile premaxilla, enabling jaw protrusion. Jaw protrusion evolved independently 3 times in teleostean radiation 1) Ostariophysi – Cypriniformes; 2) Atherinomorpha and 2) Percomorpha – especially certain derived percomorphs - cichlids and labroid allies PREMAXILLA 1 Teleost Monophyly • Lauder & Liem support notion: • 2. Unpaired basibranchial tooth plates (trend - consolidation dermal tooth patches in pharynx). • Primitive = whole bucco- pharynx w/ irregular tooth patches – consolidate into functional units - modified w/in teleostei esp. functional pharyngeal jaws. Teleost Monophyly • Lauder and Liem support this notion: • 3. Internal carotid foramen enclosed in parasphenoid (are all characters functional, maybe don't have one - why should they?) 2 Teleost Tails • Most interesting structure in teleosts is caudal fin. • Teleosts possess caudal skeleton differs from other neopterygian fishes - Possible major functional significance in Actinopterygian locomotor patterns. • Halecomorphs-ginglymodes = caudal fin rays articulate with posterior edge of haemal spines and hypurals (modified haemal spines). Fin is heterocercal (inside and out). Ginglymod - Gars Halecomorph - Amia 3 Tails • “Chondrostean hinge” at base of upper lobe - weakness btw body and tail lobe. Asymmetrical tail = asymmetrical thrust with respect to body axis. -
Body-Shape Diversity in Triassic–Early Cretaceous Neopterygian fishes: Sustained Holostean Disparity and Predominantly Gradual Increases in Teleost Phenotypic Variety
Body-shape diversity in Triassic–Early Cretaceous neopterygian fishes: sustained holostean disparity and predominantly gradual increases in teleost phenotypic variety John T. Clarke and Matt Friedman Comprising Holostei and Teleostei, the ~32,000 species of neopterygian fishes are anatomically disparate and represent the dominant group of aquatic vertebrates today. However, the pattern by which teleosts rose to represent almost all of this diversity, while their holostean sister-group dwindled to eight extant species and two broad morphologies, is poorly constrained. A geometric morphometric approach was taken to generate a morphospace from more than 400 fossil taxa, representing almost all articulated neopterygian taxa known from the first 150 million years— roughly 60%—of their history (Triassic‒Early Cretaceous). Patterns of morphospace occupancy and disparity are examined to: (1) assess evidence for a phenotypically “dominant” holostean phase; (2) evaluate whether expansions in teleost phenotypic variety are predominantly abrupt or gradual, including assessment of whether early apomorphy-defined teleosts are as morphologically conservative as typically assumed; and (3) compare diversification in crown and stem teleosts. The systematic affinities of dapediiforms and pycnodontiforms, two extinct neopterygian clades of uncertain phylogenetic placement, significantly impact patterns of morphological diversification. For instance, alternative placements dictate whether or not holosteans possessed statistically higher disparity than teleosts in the Late Triassic and Jurassic. Despite this ambiguity, all scenarios agree that holosteans do not exhibit a decline in disparity during the Early Triassic‒Early Cretaceous interval, but instead maintain their Toarcian‒Callovian variety until the end of the Early Cretaceous without substantial further expansions. After a conservative Induan‒Carnian phase, teleosts colonize (and persistently occupy) novel regions of morphospace in a predominantly gradual manner until the Hauterivian, after which expansions are rare.