Wiesław Fałtynowicz, Maria Kossowska
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New Or Interesting Lichens and Lichenicolous Fungi from Belgium, Luxembourg and Northern France
New or interesting lichens and lichenicolous fungi from Belgium, Luxembourg and northern France. X Emmanuël SÉRUSIAUX1, Paul DIEDERICH2, Damien ERTZ3, Maarten BRAND4 & Pieter VAN DEN BOOM5 1 Plant Taxonomy and Conservation Biology Unit, University of Liège, Sart Tilman B22, B-4000 Liège, Belgique ([email protected]) 2 Musée national d’histoire naturelle, 25 rue Munster, L-2160 Luxembourg, Luxembourg ([email protected]) 3 Jardin Botanique National de Belgique, Domaine de Bouchout, B-1860 Meise, Belgium ([email protected]) 4 Klipperwerf 5, NL-2317 DX Leiden, the Netherlands ([email protected]) 5 Arafura 16, NL-5691 JA Son, the Netherlands ([email protected]) Sérusiaux, E., P. Diederich, D. Ertz, M. Brand & P. van den Boom, 2006. New or interesting lichens and lichenicolous fungi from Belgium, Luxembourg and northern France. X. Bul- letin de la Société des naturalistes luxembourgeois 107 : 63-74. Abstract. Review of recent literature and studies on large and mainly recent collections of lichens and lichenicolous fungi led to the addition of 35 taxa to the flora of Belgium, Lux- embourg and northern France: Abrothallus buellianus, Absconditella delutula, Acarospora glaucocarpa var. conspersa, Anema nummularium, Anisomeridium ranunculosporum, Artho- nia epiphyscia, A. punctella, Bacidia adastra, Brodoa atrofusca, Caloplaca britannica, Cer- cidospora macrospora, Chaenotheca laevigata, Collemopsidium foveolatum, C. sublitorale, Coppinsia minutissima, Cyphelium inquinans, Involucropyrenium squamulosum, Lecania fructigena, Lecanora conferta, L. pannonica, L. xanthostoma, Lecidea variegatula, Mica- rea micrococca, Micarea subviridescens, M. vulpinaris, Opegrapha prosodea, Parmotrema stuppeum, Placynthium stenophyllum var. isidiatum, Porpidia striata, Pyrenidium actinellum, Thelopsis rubella, Toninia physaroides, Tremella coppinsii, Tubeufia heterodermiae, Verru- caria acrotella and Vezdaea stipitata. -
Secuenciación Metagenómica Y Nuevos Procedimientos Bioinformáticos Para Entender La Evolución De Hongos Liquenizados
UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE FARMACIA TESIS DOCTORAL Secuenciación metagenómica y nuevos procedimientos bioinformáticos para entender la evolución de hongos liquenizados Metagenome sequencing with new bioinformatic approaches to understand the evolution of lichen forming fungi MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR David Pizarro Martínez Directores Ana María Crespo de las Casas Pradeep Kumar Divakar Madrid © David Pizarro Martínez, 2019 Universidad Complutense de Madrid Facultad de Farmacia Departamento de Farmacología, Farmacognosia y Botánica SECUENCIACIÓN METAGENÓMICA Y NUEVOS PROCEDIMIENTOS BIOINFORMÁTICOS PARA ENTENDER LA EVOLUCIÓN DE HONGOS LIQUENIZADOS METAGENOME SEQUENCING WITH NEW BIOINFORMATIC APPROACHES TO UNDERSTAND THE EVOLUTION OF LICHEN FORMING FUNGI MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR: DAVID PIZARRO MARTÍNEZ BAJO LA DIRECCIÓN DE LOS DOCTORES ANA MARÍA CRESPO DE LAS CASAS y PRADEEP KUMAR DIVAKAR Madrid, 2019 Universidad Complutense de Madrid Facultad de Farmacia Departamento de Farmacología, Farmacognosia y Botánica SECUENCIACIÓN METAGENÓMICA Y NUEVOS PROCEDIMIENTOS BIOINFORMÁTICOS PARA ENTENDER LA EVOLUCIÓN DE HONGOS LIQUENIZADOS METAGENOME SEQUENCING WITH NEW BIOINFORMATIC APPROACHES TO UNDERSTAND THE EVOLUTION OF LICHEN FORMING FUNGI MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR: DAVID PIZARRO MARTÍNEZ BAJO LA DIRECCIÓN DE LOS DOCTORES ANA MARÍA CRESPO DE LAS CASAS y PRADEEP KUMAR DIVAKAR Madrid, 2019 UNIVE R SIDAD • COMPLU!~~R~~ DECLARACIÓN DE AUTORÍA Y ORIGINALIDAD DE LA TESIS PRESENTADA PARA OBTENER EL TÍTULO DE DOCTOR D ./Dña. Da,·id Pizarro Martínez estudiante en el Programa de Doctorado Fannacia ~----------------- de la Facultad de Fannacia de Ja Universidad Complutense de Madrid, como autor/a de la tesis presentada para la obtención del título de Doctor y titulada: Secuenciación metagenómica y nuevos procedimientos biomformáucos para entender la e'oluc16n de hongos hquenizados y dirigida por: Ana Mª Crespo de las Casas y Pradeep K. -
1307 Fungi Representing 1139 Infrageneric Taxa, 317 Genera and 66 Families ⇑ Jolanta Miadlikowska A, , Frank Kauff B,1, Filip Högnabba C, Jeffrey C
Molecular Phylogenetics and Evolution 79 (2014) 132–168 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families ⇑ Jolanta Miadlikowska a, , Frank Kauff b,1, Filip Högnabba c, Jeffrey C. Oliver d,2, Katalin Molnár a,3, Emily Fraker a,4, Ester Gaya a,5, Josef Hafellner e, Valérie Hofstetter a,6, Cécile Gueidan a,7, Mónica A.G. Otálora a,8, Brendan Hodkinson a,9, Martin Kukwa f, Robert Lücking g, Curtis Björk h, Harrie J.M. Sipman i, Ana Rosa Burgaz j, Arne Thell k, Alfredo Passo l, Leena Myllys c, Trevor Goward h, Samantha Fernández-Brime m, Geir Hestmark n, James Lendemer o, H. Thorsten Lumbsch g, Michaela Schmull p, Conrad L. Schoch q, Emmanuël Sérusiaux r, David R. Maddison s, A. Elizabeth Arnold t, François Lutzoni a,10, Soili Stenroos c,10 a Department of Biology, Duke University, Durham, NC 27708-0338, USA b FB Biologie, Molecular Phylogenetics, 13/276, TU Kaiserslautern, Postfach 3049, 67653 Kaiserslautern, Germany c Botanical Museum, Finnish Museum of Natural History, FI-00014 University of Helsinki, Finland d Department of Ecology and Evolutionary Biology, Yale University, 358 ESC, 21 Sachem Street, New Haven, CT 06511, USA e Institut für Botanik, Karl-Franzens-Universität, Holteigasse 6, A-8010 Graz, Austria f Department of Plant Taxonomy and Nature Conservation, University of Gdan´sk, ul. Wita Stwosza 59, 80-308 Gdan´sk, Poland g Science and Education, The Field Museum, 1400 S. -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
The Fungi of Slapton Ley National Nature Reserve and Environs
THE FUNGI OF SLAPTON LEY NATIONAL NATURE RESERVE AND ENVIRONS APRIL 2019 Image © Visit South Devon ASCOMYCOTA Order Family Name Abrothallales Abrothallaceae Abrothallus microspermus CY (IMI 164972 p.p., 296950), DM (IMI 279667, 279668, 362458), N4 (IMI 251260), Wood (IMI 400386), on thalli of Parmelia caperata and P. perlata. Mainly as the anamorph <it Abrothallus parmeliarum C, CY (IMI 164972), DM (IMI 159809, 159865), F1 (IMI 159892), 2, G2, H, I1 (IMI 188770), J2, N4 (IMI 166730), SV, on thalli of Parmelia carporrhizans, P Abrothallus parmotrematis DM, on Parmelia perlata, 1990, D.L. Hawksworth (IMI 400397, as Vouauxiomyces sp.) Abrothallus suecicus DM (IMI 194098); on apothecia of Ramalina fustigiata with st. conid. Phoma ranalinae Nordin; rare. (L2) Abrothallus usneae (as A. parmeliarum p.p.; L2) Acarosporales Acarosporaceae Acarospora fuscata H, on siliceous slabs (L1); CH, 1996, T. Chester. Polysporina simplex CH, 1996, T. Chester. Sarcogyne regularis CH, 1996, T. Chester; N4, on concrete posts; very rare (L1). Trimmatothelopsis B (IMI 152818), on granite memorial (L1) [EXTINCT] smaragdula Acrospermales Acrospermaceae Acrospermum compressum DM (IMI 194111), I1, S (IMI 18286a), on dead Urtica stems (L2); CY, on Urtica dioica stem, 1995, JLT. Acrospermum graminum I1, on Phragmites debris, 1990, M. Marsden (K). Amphisphaeriales Amphisphaeriaceae Beltraniella pirozynskii D1 (IMI 362071a), on Quercus ilex. Ceratosporium fuscescens I1 (IMI 188771c); J1 (IMI 362085), on dead Ulex stems. (L2) Ceriophora palustris F2 (IMI 186857); on dead Carex puniculata leaves. (L2) Lepteutypa cupressi SV (IMI 184280); on dying Thuja leaves. (L2) Monographella cucumerina (IMI 362759), on Myriophyllum spicatum; DM (IMI 192452); isol. ex vole dung. (L2); (IMI 360147, 360148, 361543, 361544, 361546). -
New Records of One <I>Amygdalaria</I> and Three <I
ISSN (print) 0093-4666 © 2015. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/130.33 Volume 130, pp. 33–40 January–March 2015 New records of one Amygdalaria and three Porpidia taxa (Lecideaceae) from China Lu-Lu Zhang, Xin Zhao, & Ling Hu * Key Laboratory of Plant Stress Research, College of Life Sciences, Shandong Normal University, Jinan, 250014, P. R. China * Correspondence to: [email protected] Abstract —Four lichen taxa of Lecideaceae, Amygdalaria consentiens var. consentiens, Porpidia carlottiana, P. lowiana, and P. tuberculosa, are reported for the first time from China. Key words —Asia, Lecideales, lichens Introduction The family Lecideaceae Chevall. contains about 23 genera and 547 species, of which the largest genus is Lecidea Ach., containing about 427 species (Kirk et al. 2008, Fryday & Hertel 2014). In China, twenty-three species of the other genera in Lecideaceae have been reported, including two each of Amygdalaria Norman, Bellemerea Hafellner & Cl. Roux, and Immersaria Rambold & Pietschm.; one each of Lecidoma Gotth. Schneid. & Hertel, Paraporpidia Rambold & Pietschm., and Stenhammarella Hertel; and 16 species of Porpidia Körb. (Hertel 1977, Wei 1991; Aptroot & Seaward 1999; Aptroot 2002; Aptroot & Sparrius 2003; Obermayer 2004; Guo 2005; Zhang et al. 2010, 2012; Wang et al. 2012; Ismayi & Abbas 2013; Hu et al. 2014). Amygdalaria and Porpidia are obviously very closely related. Both have large halonate ascospores, a high hymenium, Porpidia-type asci, and a dark pigmented hypothecium and are (with a few exceptions) restricted to lime-free, silicate rocks. However Amygdalaria can be best distinguished from Porpidia by the presence of cephalodia, the higher hymenium (over 130 µm), the larger ascospores (generally 20–35 × 10–16 µm) with conspicuous, rather compact epispores, and a tendency toward a brownish or yellowish pink thallus (Inoue 1984, Brodo & Hertel 1987, Gowan 1989, Smith et al. -
Lichens and Allied Fungi of the Indiana Forest Alliance
2017. Proceedings of the Indiana Academy of Science 126(2):129–152 LICHENS AND ALLIED FUNGI OF THE INDIANA FOREST ALLIANCE ECOBLITZ AREA, BROWN AND MONROE COUNTIES, INDIANA INCORPORATED INTO A REVISED CHECKLIST FOR THE STATE OF INDIANA James C. Lendemer: Institute of Systematic Botany, The New York Botanical Garden, Bronx, NY 10458-5126 USA ABSTRACT. Based upon voucher collections, 108 lichen species are reported from the Indiana Forest Alliance Ecoblitz area, a 900 acre unit in Morgan-Monroe and Yellowwood State Forests, Brown and Monroe Counties, Indiana. The lichen biota of the study area was characterized as: i) dominated by species with green coccoid photobionts (80% of taxa); ii) comprised of 49% species that reproduce primarily with lichenized diaspores vs. 44% that reproduce primarily through sexual ascospores; iii) comprised of 65% crustose taxa, 29% foliose taxa, and 6% fruticose taxa; iv) one wherein many species are rare (e.g., 55% of species were collected fewer than three times) and fruticose lichens other than Cladonia were entirely absent; and v) one wherein cyanolichens were poorly represented, comprising only three species. Taxonomic diversity ranged from 21 to 56 species per site, with the lowest diversity sites concentrated in riparian corridors and the highest diversity sites on ridges. Low Gap Nature Preserve, located within the study area, was found to have comparable species richness to areas outside the nature preserve, although many species rare in the study area were found only outside preserve boundaries. Sets of rare species are delimited and discussed, as are observations as to the overall low abundance of lichens on corticolous substrates and the presence of many unhealthy foliose lichens on mature tree boles. -
<I> Lecanoromycetes</I> of Lichenicolous Fungi Associated With
Persoonia 39, 2017: 91–117 ISSN (Online) 1878-9080 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE https://doi.org/10.3767/persoonia.2017.39.05 Phylogenetic placement within Lecanoromycetes of lichenicolous fungi associated with Cladonia and some other genera R. Pino-Bodas1,2, M.P. Zhurbenko3, S. Stenroos1 Key words Abstract Though most of the lichenicolous fungi belong to the Ascomycetes, their phylogenetic placement based on molecular data is lacking for numerous species. In this study the phylogenetic placement of 19 species of cladoniicolous species lichenicolous fungi was determined using four loci (LSU rDNA, SSU rDNA, ITS rDNA and mtSSU). The phylogenetic Pilocarpaceae analyses revealed that the studied lichenicolous fungi are widespread across the phylogeny of Lecanoromycetes. Protothelenellaceae One species is placed in Acarosporales, Sarcogyne sphaerospora; five species in Dactylosporaceae, Dactylo Scutula cladoniicola spora ahtii, D. deminuta, D. glaucoides, D. parasitica and Dactylospora sp.; four species belong to Lecanorales, Stictidaceae Lichenosticta alcicorniaria, Epicladonia simplex, E. stenospora and Scutula epiblastematica. The genus Epicladonia Stictis cladoniae is polyphyletic and the type E. sandstedei belongs to Leotiomycetes. Phaeopyxis punctum and Bachmanniomyces uncialicola form a well supported clade in the Ostropomycetidae. Epigloea soleiformis is related to Arthrorhaphis and Anzina. Four species are placed in Ostropales, Corticifraga peltigerae, Cryptodiscus epicladonia, C. galaninae and C. cladoniicola -
Opuscula Philolichenum, 6: 87-120. 2009
Opuscula Philolichenum, 6: 87–120. 2009. Lichenicolous fungi and some lichens from the Holarctic 1 MIKHAIL P. ZHURBENKO ABSTRACT. – 102 species of lichenicolous fungi and 23 lichens are reported, mainly from the Russian Arctic. Four new taxa are described: Clypeococcum bisporum (on Cetraria and Flavocetraria), Echinodiscus kozhevnikovii (on Cetraria), Stigmidium hafellneri (on Flavocetraria) and Gypsoplaca macrophylla f. blastidiata. The following lichenicolous fungi are reported for the first time from North America: Monodictys fuliginosa, Stigmidium microcarpum and Trichosphaeria lichenum. The following lichenicolous fungi and lichens are reported as new to Asia: Arthonia almquistii, Arthophacopsis parmeliarum, Cercidospora lobothalliae, Clypeococcum placopsiphilum, Dactylospora cf. aeruginosa, D. frigida, Epicladonia sandstedei, Everniicola flexispora, Hypogymnia fistulosa, Lecanora luteovernalis, Lecanographa rinodinae, Lichenochora mediterraneae, Lichenopeltella peltigericola, Lichenopuccinia poeltii, Lichenosticta alcicornaria, Phoma cytospora, Polycoccum ventosicola, Roselliniopsis gelidaria, R. ventosa, Sclerococcum gelidarum, Scoliciosporum intrusum, Stigmidium croceae, S. mycobilimbiae, S. stygnospilum, S. superpositum, Taeniolella diederichiana, Thelocarpon impressellum and Zwackhiomyces macrosporus. Twenty-eight species are new to Russia, 15 new to the Arctic, five new to Mongolia and nine new to Alaska. Twenty lichen genera and 31 species are new hosts for various species of lichenicolous fungi. INTRODUCTION This paper deals -
A Provisional Checklist of the Lichens of Belarus
Opuscula Philolichenum, 17: 374-479. 2018. *pdf effectively published online 31December2018 via (http://sweetgum.nybg.org/philolichenum/) A Provisional Checklist of the Lichens of Belarus ANDREI TSURYKAU1 ABSTRACT. – A total of 606 species and five subspecific taxa of lichens and allied fungi are documented from Belarus based on combined historical (pre-1980) and modern (post-1980) records. Of these, 50 (8.3%) are represented by only historical reports, 235 (38.8%) are represented by only modern vouchers, and 310 (51.2%) are represented by both historical and modern records. Eleven species are known only from generalized published reports that lacked specific location data. Eighty-eight species are excluded as erroneous reports, or considered as doubtful records. KEYWORDS. – Biodiversity, distribution, lichenized fungi, historical baseline. INTRODUCTION Published accounts of the lichens of Belarus date to the end of the 18th century (Gilibert 1781). In the first phase of lichenological discovery in the country (1780–1900) lichens did not attract special attention and were reported among the general lists of vascular plants and fungi. However, 49 species were reported by the French botanist J.E. Gilibert, the Russian ethnographer of Belarusian origin N. Downar (Dovnar-Zapol'skiy) and Polish botanists K. Filipowicz and F. Błoński (Błoński 1888, 1889; Downar 1861; Filipowicz 1881; Gilibert 1781, 1792). In the early 20th century (1900–1925), there was a second phase of lichenological discovery in Belarus. During that time, Belarusian pioneer lichenologist V.P. Savicz and his wife L.I. Ljubitzkaja (later Savicz-Ljubitzkaja) reported 91 species new to the country (Ljubitzkaja 1914; Savicz 1909, 1910, 1911, 1925; Savicz & Savicz 1924; Wyssotzky et al. -
Lichens in Old-Growth and Managed Mountain Spruce Forests in The
Biodiversity and Conservation (2019) 28:3497–3528 https://doi.org/10.1007/s10531-019-01834-4 ORIGINAL PAPER Lichens in old‑growth and managed mountain spruce forests in the Czech Republic: assessment of biodiversity, functional traits and bioindicators Jiří Malíček1 · Zdeněk Palice1 · Jan Vondrák1,2 · Martin Kostovčík3,4 · Veronika Lenzová5 · Jeňýk Hofmeister6,7 Received: 3 January 2019 / Revised: 5 August 2019 / Accepted: 13 August 2019 / Published online: 7 September 2019 © Springer Nature B.V. 2019 Abstract Natural spruce forests are restricted to the highest mountain ranges in the Czech Repub- lic. Spruce is also the commonest tree species in managed forests. Owing to a massive decline of spruce forests in Central Europe, caused by recent climatic fuctuations and dis- turbances, the lichen diversity and species composition was compared between ten repre- sentative natural mountain old-growth forests in the Czech Republic and their counterparts in mature managed forests. The old-growth forests are characterized by a higher species richness, abundance, number of Red-listed species, functional, taxonomic and phylogenetic diversities. Plots with the highest species richness are situated in the Šumava Mountains, an area with a relatively low sulphur deposition in the past. Bioindication analysis search- ing for lichen indicators supported several species (e.g. Xylographa vitiligo, Chaenotheca sphaerocephala) and genera (e.g. Calicium, Xylographa) with a strong preference for old- growth forests. Analysis of lichen functional traits revealed a higher abundance of spe- cies with a vegetative reproduction in managed forests that may be explained by a higher efciency in colonization by young successional stages. Lichens with stalked apothecia, pigmented ascospores and large ascospores are more frequent in old-growth forests.