Triadin, a Linker for Calsequestrin and the Ryanodine Receptor
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Surface Glycoproteomic Analysis of Hepatocellular Carcinoma Cells by Affinity Enrichment and Mass Spectrometric Identification
Glycoconj J (2012) 29:411–424 DOI 10.1007/s10719-012-9420-3 Surface glycoproteomic analysis of hepatocellular carcinoma cells by affinity enrichment and mass spectrometric identification Wei Mi & Wei Jia & Zhaobin Zheng & Jinglan Wang & Yun Cai & Wantao Ying & Xiaohong Qian Received: 14 April 2012 /Revised: 5 June 2012 /Accepted: 12 June 2012 /Published online: 1 July 2012 # Springer Science+Business Media, LLC 2012 Abstract Cell surface glycoproteins are one of the most surface-capturing (CSC) technique was an approach specif- frequently observed phenomena correlated with malignant ically targeted at membrane glycoproteins involving the growth. Hepatocellular carcinoma (HCC) is one of the most affinity capture of membrane glycoproteins using glycan malignant tumors in the world. The majority of hepatocel- biotinylation labeling on intact cell surfaces. To characterize lular carcinoma cell surface proteins are modified by glyco- the cell surface glycoproteome and probe the mechanism of sylation in the process of tumor invasion and metastasis. tumor invasion and metastasis of HCC, we have modified Therefore, characterization of cell surface glycoproteins can and evaluated the cell surface-capturing strategy, and ap- provide important information for diagnosis and treatment plied it for surface glycoproteomic analysis of hepatocellu- of liver cancer, and also represent a promising source of lar carcinoma cells. In total, 119 glycosylation sites on 116 potential diagnostic biomarkers and therapeutic targets for unique glycopeptides were identified, corresponding to 79 hepatocellular carcinoma. However, cell surface glycopro- different protein species. Of these, 65 (54.6 %) new pre- teins of HCC have been seldom identified by proteomics dicted glycosylation sites were identified that had not pre- approaches because of their hydrophobic nature, poor solu- viously been determined experimentally. -
Microarchitecture of the Dyad
Cardiovascular Research (2013) 98, 169–176 SPOTLIGHT REVIEW doi:10.1093/cvr/cvt025 Microarchitecture of the dyad David R.L. Scriven, Parisa Asghari, and Edwin D.W. Moore* Department of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, 2350 Health Sciences Mall, Vancouver, BC, Canada V6T 1Z3 Received 12 December 2012; revised 2 February 2013; accepted 4 February 2013; online publish-ahead-of-print 11 February 2013 Downloaded from https://academic.oup.com/cardiovascres/article/98/2/169/278625 by guest on 23 September 2021 Abstract This review highlights recent and ongoing discoveries that are transforming the previously held view of dyad structure and function. New data show that dyads vary greatly in both structure and in their associated molecules. Dyads can contain varying numbers of type 2 ryanodine receptor (RYR2) clusters that range in size from one to hundreds of tetramers and they can adopt numerous orientations other than the expected checkerboard. The association of Cav1.2 with RYR2, which defines the couplon, is not absolute, leading to a number of scenarios such as dyads without couplons and those in which only a fraction of the clusters are in couplons. Different dyads also vary in the transporters and exchangers with which they are associated producing functional differences that amplify their structural diversity. The essential role of proteins, such as junctophilin-2, calsequestrin, triadin, and junctin that main- tain both the functional and structural integrity of the dyad have recently been elucidated giving a new mechanistic understanding of heart diseases, such as arrhythmias, hypertension, failure, and sudden cardiac death. -
1 Metabolic Dysfunction Is Restricted to the Sciatic Nerve in Experimental
Page 1 of 255 Diabetes Metabolic dysfunction is restricted to the sciatic nerve in experimental diabetic neuropathy Oliver J. Freeman1,2, Richard D. Unwin2,3, Andrew W. Dowsey2,3, Paul Begley2,3, Sumia Ali1, Katherine A. Hollywood2,3, Nitin Rustogi2,3, Rasmus S. Petersen1, Warwick B. Dunn2,3†, Garth J.S. Cooper2,3,4,5* & Natalie J. Gardiner1* 1 Faculty of Life Sciences, University of Manchester, UK 2 Centre for Advanced Discovery and Experimental Therapeutics (CADET), Central Manchester University Hospitals NHS Foundation Trust, Manchester Academic Health Sciences Centre, Manchester, UK 3 Centre for Endocrinology and Diabetes, Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, UK 4 School of Biological Sciences, University of Auckland, New Zealand 5 Department of Pharmacology, Medical Sciences Division, University of Oxford, UK † Present address: School of Biosciences, University of Birmingham, UK *Joint corresponding authors: Natalie J. Gardiner and Garth J.S. Cooper Email: [email protected]; [email protected] Address: University of Manchester, AV Hill Building, Oxford Road, Manchester, M13 9PT, United Kingdom Telephone: +44 161 275 5768; +44 161 701 0240 Word count: 4,490 Number of tables: 1, Number of figures: 6 Running title: Metabolic dysfunction in diabetic neuropathy 1 Diabetes Publish Ahead of Print, published online October 15, 2015 Diabetes Page 2 of 255 Abstract High glucose levels in the peripheral nervous system (PNS) have been implicated in the pathogenesis of diabetic neuropathy (DN). However our understanding of the molecular mechanisms which cause the marked distal pathology is incomplete. Here we performed a comprehensive, system-wide analysis of the PNS of a rodent model of DN. -
Absence of Triadin, a Protein of the Calcium Release Complex, Is Responsible for Cardiac Arrhythmia with Sudden Death in Human
Absence of triadin, a protein of the calcium release complex, is responsible for cardiac arrhythmia with sudden death in human. Nathalie Roux-Buisson, Marine Cacheux, Anne Fourest-Lieuvin, J. Fauconnier, Julie Brocard, Isabelle Denjoy, Philippe Durand, Pascale Guicheney, Florence Kyndt, Antoine Leenhardt, et al. To cite this version: Nathalie Roux-Buisson, Marine Cacheux, Anne Fourest-Lieuvin, J. Fauconnier, Julie Brocard, et al.. Absence of triadin, a protein of the calcium release complex, is responsible for cardiac arrhythmia with sudden death in human.. Human Molecular Genetics, Oxford University Press (OUP), 2012, 21 (12), pp.2759-67. 10.1093/hmg/dds104. inserm-00763211 HAL Id: inserm-00763211 https://www.hal.inserm.fr/inserm-00763211 Submitted on 10 Dec 2012 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. HMG Advance Access published March 29, 2012 Human Molecular Genetics, 2012 1–9 doi:10.1093/hmg/dds104 Absence of triadin, a protein of the calcium release complex, is responsible for cardiac arrhythmia with sudden death in human Nathalie Roux-Buisson1,2,3,4,{, Marine Cacheux1,4,{, Anne Fourest-Lieuvin1,4,5, Jeremy Fauconnier6,7,8,9, Julie Brocard1,4, Isabelle Denjoy10, Philippe Durand11, Pascale Guicheney12,13, Florence Kyndt14,15,16, Antoine Leenhardt10, Herve´ Le Marec14,16,17, Vincent Lucet18, Philippe Mabo19, Vincent Probst14,16,17, Nicole Monnier1,2, Pierre F. -
Dual Copy Number Variants Involving 16P11 and 6Q22 in a Case
European Journal of Human Genetics (2013) 21, 361–366 & 2013 Macmillan Publishers Limited All rights reserved 1018-4813/13 www.nature.com/ejhg LETTERS 32 duplications, 0.78%). A detailed review of 18 patients found Dual copy number variants that the most consistent clinical manifestations in these individuals were intellectual impairment and speech and language delays.8 involving 16p11 and These findings were supported by a similar study that included 7400 patients who had undergone array comparative genomic 6q22inacaseof hybridisation (array-CGH) testing in a clinical context, 45 of whom carried 16p11.2 anomalies (27 deletions, 18 duplications, 0.6%).3 childhood apraxia of Phenotypic characterisation of 27 individuals also found that all had speech and language delays and cognitive impairment.3 Other predomi- nant features of 16p11.2 syndrome include dysmorphism, macrocephaly speech and pervasive and autistic disorders.3,4,8,14 However, all of these features have been disputed and it is likely that ascertainment bias will affect the developmental disorder conclusions of many studies, particularly those that focus upon single cases. Thus, the characterisation of the relationships between genetic aberration and clinical presentation is ongoing and will require European Journal of Human Genetics (2013) 21, 361–365; further, more refined, studies with detailed investigations of this doi:10.1038/ejhg.2012.166; published online 22 August 2012 chromosome region and consistent phenotyping of affected individuals. The child described here was originally assessed for the presence of In this issue, Raca et al1 present two cases of childhood apraxia of FOXP2 (OMIM #605317) mutations and rearrangements, as part of 15 speech (CAS) arising from microdeletions of chromosome 16p11.2. -
Generation of a Triadin Knockout Syndrome Zebrafish Model
International Journal of Molecular Sciences Article Generation of a Triadin KnockOut Syndrome Zebrafish Model Vanilla Martina Vecchi 1,†, Marco Spreafico 1,† , Alessia Brix 1, Anna Santoni 2, Simone Sala 3 , Anna Pistocchi 1,* , Anna Marozzi 1,† and Chiara Di Resta 2,† 1 Department of Medical Biotechnology and Translational Medicine, Università degli Studi di Milano, LITA, Segrate, 20090 Milan, Italy; [email protected] (V.M.V.); marco.spreafi[email protected] (M.S.); [email protected] (A.B.); [email protected] (A.M.) 2 UOC Clinical Genomics, IRCCS San Raffaele Hospital, 20132 Milan, Italy; [email protected] (A.S.); [email protected] (C.D.R.) 3 Department of Cardiac Electrophysiology and Arrhythmology, IRCCS San Raffaele Hospital, 20132 Milan, Italy; [email protected] * Correspondence: [email protected] † These authors contributed equally to the work. Abstract: Different forms of sudden cardiac death have been described, including a recently identified form of genetic arrhythmogenic disorder, named “Triadin KnockOut Syndrome” (TKOS). TKOS is associated with recessive mutations in the TRDN gene, encoding for TRIADIN, but the pathogenic mechanism underlying the malignant phenotype has yet to be completely defined. Moreover, patients with TKOS are often refractory to conventional treatment, substantiating the need to identify new therapeutic strategies in order to prevent or treat cardiac events. The zebrafish (Danio rerio) heart is highly comparable to the human heart in terms of functions, signal pathways and ion channels, representing a good model to study cardiac disorders. In this work, we generated the first zebrafish model for trdn loss-of-function, by means of trdn morpholino injections, and characterized Citation: Vecchi, V.M.; Spreafico, M.; its phenotype. -
HAX-1 Regulates Cyclophilin-D Levels and Mitochondria Permeability
HAX-1 regulates cyclophilin-D levels and mitochondria PNAS PLUS permeability transition pore in the heart Chi Keung Lam1, Wen Zhao1, Guan-Sheng Liu, Wen-Feng Cai, George Gardner, George Adly, and Evangelia G. Kranias2 Department of Pharmacology and Cell Biophysics, University of Cincinnati College of Medicine, Cincinnati, OH 45267-0575 Edited by Andrew R. Marks, Columbia University College of Physicians & Surgeons, New York, NY, and approved October 21, 2015 (received for review May 5, 2015) The major underpinning of massive cell death associated with since its discovery in 1997 (7), its presence in cardiomyocytes was myocardial infarction involves opening of the mitochondrial only recently identified. Interestingly, cardiac HAX-1 localizes permeability transition pore (mPTP), resulting in disruption of not only to mitochondria but also the endo/sarcoplasmic re- mitochondria membrane integrity and programmed necrosis. ticulum (ER/SR) and it binds to phospholamban, increasing Studies in human lymphocytes suggested that the hemato- inhibition of the SR calcium transport ATPase and reducing poietic-substrate-1 associated protein X-1 (HAX-1) is linked to SR calcium cycling. As cardiomyocyte contraction-relaxation is regulation of mitochondrial membrane function, but its role in coupled to calcium oscillation, HAX-1 is an important regulator of controlling mPTP activity remains obscure. Herein we used models cardiomyocyte contractility (12, 13). HAX-1 can also modulate ER with altered HAX-1 expression levels in the heart and uncovered stress responses by inhibiting the inositol requiring enzyme-1 (IRE- an unexpected role of HAX-1 in regulation of mPTP and cardio- 1) signaling arm, which diminishes cell death through reduction of myocyte survival. -
Cardiac Calsequestrin Phosphorylation and Trafficking in the Am Mmalian Cardiomyocyte Timothy Mcfarland Wayne State University
Wayne State University DigitalCommons@WayneState Wayne State University Dissertations 1-1-2011 Cardiac Calsequestrin Phosphorylation And Trafficking In The aM mmalian Cardiomyocyte Timothy Mcfarland Wayne State University Follow this and additional works at: http://digitalcommons.wayne.edu/oa_dissertations Recommended Citation Mcfarland, Timothy, "Cardiac Calsequestrin Phosphorylation And Trafficking In The aM mmalian Cardiomyocyte" (2011). Wayne State University Dissertations. Paper 176. This Open Access Dissertation is brought to you for free and open access by DigitalCommons@WayneState. It has been accepted for inclusion in Wayne State University Dissertations by an authorized administrator of DigitalCommons@WayneState. CARDIAC CALSEQUESTRIN PHOSPHORYLATION AND TRAFFICKING IN THE MAMMALIAN CARDIOMYOCYTE by TIMOTHY P. MCFARLAND DISSERTATION Submitted to the Graduate School of Wayne State University, Detroit, Michigan in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY 2011 MAJOR: PHYSIOLOGY Approved by: ____________________________________ Advisor Date ____________________________________ ____________________________________ ____________________________________ ____________________________________ © COPYRIGHT BY TIMOTHY P. MCFARLAND 2011 All Rights Reserved DEDICATION This work is dedicated to my family. To my parents and grandparents, who provided continuous support and footed the bill for the past ten years, thank you. Your investment finally paid off. And to my beautiful and patient wife Lindsay, thank you for getting me through the tough times and keeping our family afloat, I love you. ii ACKNOWLEDGEMENTS I would like to thank the members of my dissertation committee for their support and forwardness throughout this process. Your honesty and exceptional insights have helped me to develop professionally and have greatly expedited my graduation. I would especially like to thank my mentor Dr. Steven Cala for helping me to become a scientist. -
Molecular Genetics of Exercise-Induced
European Journal of Human Genetics (2003) 11, 888–891 & 2003 Nature Publishing Group All rights reserved 1018-4813/03 $25.00 www.nature.com/ejhg SHORT REPORT Molecular genetics of exercise-induced polymorphic ventricular tachycardia: identification of three novel cardiac ryanodine receptor mutations and two common calsequestrin 2 amino-acid polymorphisms Pa¨ivi J Laitinen1, Heikki Swan2 and Kimmo Kontula*,1 1Department of Medicine and Biomedicum Helsinki, Helsinki, Finland; 2Department of Cardiology, University of Helsinki, Helsinki, Finland Mutations of two myocardial calcium signaling molecules, ryanodine receptor 2 (RYR2) and calsequestrin 2 (CASQ2), may cause catecholaminergic polymorphic ventricular tachycardia (CPVT), a severe inherited arrhythmic disease manifesting with salvoes of exercise-induced bidirectional and polymorphic tachycardias. We screened 12 Finnish CPVT probands for mutations in these genes and identified three novel RYR2 mutations (V2306I, P4902L, R4959Q), which were absent in unaffected and control individuals. Although no obvious disease-causing mutations were identified in the CASQ2 gene, the molecular screening revealed two novel amino-acid polymorphisms (T66A and V76M). The frequencies of these polymorphisms in 185 unrelated probands with long QT syndrome and in 280 healthy blood donors were not significantly different. These data, combined with our previous findings, show that RYR2 mutations are present in at least 6/16 (38%) of the catecholaminergic polymorphic ventricular tachycardia families, while CASQ2 -
Skeletal Muscle Gene Expression in Long-Term Endurance and Resistance Trained Elderly
International Journal of Molecular Sciences Article Skeletal Muscle Gene Expression in Long-Term Endurance and Resistance Trained Elderly 1,2, 3, 1,2, Alessandra Bolotta y, Giuseppe Filardo y, Provvidenza Maria Abruzzo *, Annalisa Astolfi 4,5 , Paola De Sanctis 1, Alessandro Di Martino 6, Christian Hofer 7, Valentina Indio 4 , Helmut Kern 7, Stefan Löfler 7 , Maurilio Marcacci 8, Sandra Zampieri 9,10, 1,2, 1, Marina Marini z and Cinzia Zucchini z 1 Department of Experimental, Diagnostic and Specialty Medicine, University of Bologna School of Medicine, 40138 Bologna, Italy; [email protected] (A.B.); [email protected] (P.D.S.); [email protected] (M.M.); [email protected] (C.Z.) 2 IRCCS Fondazione Don Carlo Gnocchi, 20148 Milan, Italy 3 Applied and Translational Research Center, IRCCS Istituto Ortopedico Rizzoli, 40136 Bologna, Italy; g.fi[email protected] 4 Giorgio Prodi Interdepartimental Center for Cancer Research, S.Orsola-Malpighi Hospital, 40138 Bologna, Italy; annalisa.astolfi@unibo.it (A.A.); [email protected] (V.I.) 5 Department of Morphology, Surgery and Experimental Medicine, University of Ferrara, 44121 Ferrara, Italy 6 Second Orthopaedic and Traumatologic Clinic, IRCCS Istituto Ortopedico Rizzoli, 40136 Bologna, Italy; [email protected] 7 Ludwig Boltzmann Institute for Rehabilitation Research, 1160 Wien, Austria; [email protected] (C.H.); [email protected] (H.K.); stefan.loefl[email protected] (S.L.) 8 Department of Biomedical Sciences, Knee Joint Reconstruction Center, 3rd Orthopaedic Division, Humanitas Clinical Institute, Humanitas University, 20089 Milan, Italy; [email protected] 9 Department of Surgery, Oncology and Gastroenterology, University of Padua, 35122 Padua, Italy; [email protected] 10 Department of Biomedical Sciences, University of Padua, 35131 Padua, Italy * Correspondence: [email protected]; Tel.: +39-051-2094122 These authors contributed equally to this work. -
Structure and Function of the Human Ryanodine Receptors and Their Association with Myopathies—Present State, Challenges, and Perspectives
molecules Review Structure and Function of the Human Ryanodine Receptors and Their Association with Myopathies—Present State, Challenges, and Perspectives Vladena Bauerová-Hlinková * , Dominika Hajdúchová † and Jacob A. Bauer Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská Cesta 21, 845 51 Bratislava, Slovakia; [email protected] (D.H.); [email protected] (J.A.B.) * Correspondence: [email protected]; Tel.: +421-2-5930-7439 † Current address: Department of Pathological Physiology, Jessenius Faculty of Medicine in Martin, Comenius University in Bratislava, Malá Hora 4C, 036 01 Martin, Slovakia. Academic Editor: Jacopo Sgrignani and Giovanni Grazioso Received: 31 July 2020; Accepted: 30 August 2020; Published: 4 September 2020 Abstract: Cardiac arrhythmias are serious, life-threatening diseases associated with the dysregulation of Ca2+ influx into the cytoplasm of cardiomyocytes. This dysregulation often arises from dysfunction of ryanodine receptor 2 (RyR2), the principal Ca2+ release channel. Dysfunction of RyR1, the skeletal muscle isoform, also results in less severe, but also potentially life-threatening syndromes. The RYR2 and RYR1 genes have been found to harbor three main mutation “hot spots”, where mutations change the channel structure, its interdomain interface properties, its interactions with its binding partners, or its dynamics. In all cases, the result is a defective release of Ca2+ ions from the sarcoplasmic reticulum into the myocyte cytoplasm. Here, we provide an overview of the most frequent diseases resulting from mutations to RyR1 and RyR2, briefly review some of the recent experimental structural work on these two molecules, detail some of the computational work describing their dynamics, and summarize the known changes to the structure and function of these receptors with particular emphasis on their N-terminal, central, and channel domains. -
An Expanded Proteome of Cardiac T-Tubules☆
Cardiovascular Pathology 42 (2019) 15–20 Contents lists available at ScienceDirect Cardiovascular Pathology Original Article An expanded proteome of cardiac t-tubules☆ Jenice X. Cheah, Tim O. Nieuwenhuis, Marc K. Halushka ⁎ Department of Pathology, Division of Cardiovascular Pathology, Johns Hopkins University SOM, Baltimore, MD, USA article info abstract Article history: Background: Transverse tubules (t-tubules) are important structural elements, derived from sarcolemma, found Received 27 February 2019 on all striated myocytes. These specialized organelles create a scaffold for many proteins crucial to the effective Received in revised form 29 April 2019 propagation of signal in cardiac excitation–contraction coupling. The full protein composition of this region is un- Accepted 17 May 2019 known. Methods: We characterized the t-tubule subproteome using 52,033 immunohistochemical images covering Keywords: 13,203 proteins from the Human Protein Atlas (HPA) cardiac tissue microarrays. We used HPASubC, a suite of Py- T-tubule fi Proteomics thon tools, to rapidly review and classify each image for a speci c t-tubule staining pattern. The tools Gene Cards, Caveolin String 11, and Gene Ontology Consortium as well as literature searches were used to understand pathways and relationships between the proteins. Results: There were 96 likely t-tubule proteins identified by HPASubC. Of these, 12 were matrisome proteins and 3 were mitochondrial proteins. A separate literature search identified 50 known t-tubule proteins. A comparison of the 2 lists revealed only 17 proteins in common, including 8 of the matrisome proteins. String11 revealed that 94 of 127 combined t-tubule proteins generated a single interconnected network. Conclusion: Using HPASubC and the HPA, we identified 78 novel, putative t-tubule proteins and validated 17 within the literature.