Page 1 of 42 Molecular Ecology Resources 1 Simultaneous identification of host, ectoparasite and 2 pathogen DNA via in-solution capture 3 4 Michael G. Campana* ,1 , Melissa T. R. Hawkins* ,1,2 , Lauren H. Henson 1, Kristin 5 Stewardson 1, Hillary S. Young 3, Leah R. Card 4, Justin Lock 1, Bernard 6 Agwanda 5, Jory Brinkerhoff 6, Holly D. Gaff 7, Kristofer M. Helgen 2, Jesús E. 1, 2 4 1,§ 7 Maldonado , William J. McShea , Robert C. Fleischer 8 *Co-first Authors; §Corresponding author:
[email protected] 9 1Center for Conservation and Evolutionary Genetics, Smithsonian Conservation Biology Institute, 10 3001 Connecticut Avenue NW, Washington, DC 20008, USA 11 2Division of Mammals, National Museum of Natural History, MRC 108, Smithsonian Institution, P.O. 12 Box 37012, Washington, DC 20013-7012, USA 13 3Department of Ecology, Evolution and Marine Biology, University of California Santa Barbara, Santa 14 Barbara, CA 93106, USA 15 4Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd., Front 16 Royal, VA 22630, USA 17 5National Museums of Kenya, Box 40658-00100, Nairobi, Kenya 18 6Department of Biology, University of Richmond, B322 Gottwald Center for the Sciences, 28 19 Westhampton Way, University of Richmond, VA 23173, USA 20 7Department of Biological Sciences, Old Dominion University, Norfolk, VA 23529, USA 21 22 Keywords: Ectoparasite, blood meal, pathogen, in-solution capture, DNA, high-throughput 23 sequencing 24 Running Title: Host, ectoparasite and pathogen capture 1 Molecular Ecology Resources Page 2 of 42 25 Abstract 26 Ectoparasites frequently vector pathogens from often unknown pathogen reservoirs to 27 both human and animal populations.