Output FOM Institute AMOLF 2011
Nanophotonics NanoOptics Kobus Kuipers Photonic Materials Albert Polman Photon Scattering Ad Lagendijk Surface Photonics Jaime Gómez Rivas Resonant Nanophotonics Femius Koenderink
Molecular Nanophysics Ultrafast Spectroscopy Huib Bakker Biosurface Spectroscopy Mischa Bonn Bio Imaging MS Ron Heeren Supramolecular interactions Mirjam Leunissen
Biomolecular Systems Bio-assembly & organization Marileen Dogterom Biophysics Sander Tans Biological Soft Matter Gijsje Koenderink Theory of Biomolecular Matter Bela Mulder Biochemical Networks Pieter Rein ten Wolde Systems Biology Tom Shimizu
Transition Program XUV Physics Marc Vrakking
Peer reviewed Publications 150 Publications in proceedings or other journals 6 Contributions to scientific books (chapters or entire book ) 4 PhD theses 16 Open Access publications 18 Invited lectures at international conferences and meetings 93 Other lectures and posters at (international) conferences and other scientific 281 meetings Awards and recognitions 10 Patents 3 Performances on television, radio or at public events 7 Publications in public magazines, newspapers or on the internet 32 Other professional products (software, prototypes, etc.) 8
Kobus Kuipers
Group L. Kuipers 2011
Funding FOM-Projectruimte (PR) FOM-FEI IPP program (IPP) FOM-Program Nanoscale Quantum Optics (NQO) FOM-Program Plasmonics (PLSM) NanoNextNL Program 6B Functional Nanophotonics (NN6B) Smartfix Program MEMPHIS (MEMPHIS)
Employees Hakki Acar (OIO) IPP Daryl Beggs (PD) MEMPHIS Boris Le Feber (OIO) PR Anouk de Hoogh (OIO) NQO Aron Opheij (OIO) MEMPHIS Nir Rotenberg (PD) NN6B Daan Stellinga (stagiair) - Ruben van der Wel (OIO) NN6B Matthias Wulf (OIO) PLSM
1. Academic publications a. Peer reviewed Publications
1. F. van Beijnum, C. Rétif, C.B. Smiet, M.P. van Exter, Transmission processes in random patterns of subwavelength holes, Opt. Lett. 36, 3666-3668 (2011).
2. J.C. Prangsma, D. van Oosten, L. Kuipers, Local investigation of the optical properties of subwavelength rectangular holes with a focused beam of electrons, Phil. Trans. R. Soc. A 369, 3456–3471 (2011).
3. D. van Oosten, L. Kuipers, Trapping a single atom with a fraction of a photon using a photonic crystal nanocavity, Phys. Rev. A 84, 011802(R) 1-4 (2011).
4. B. Gjonaj, J. Aulbach, P.M. Johnson, A.P. Mosk, L. Kuipers, A. Lagendijk, Active spatial control of plasmonic fields, Nat. Photonics 5, 360–363 (2011).
5. B. le Feber, J. Cesario, H. Zeijlemaker, N. Rotenberg, L. Kuipers, Exploiting long-ranged order in quasiperiodic structures for broadband plasmonic excitation, Appl. Phys. Lett. 98, 201108 1-4 (2011).
6. M. Burresi, D. van Oosten, B.S. Song, S. Noda, L. Kuipers, Ultrafast reciprocal space investigation of cavity-waveguide coupling, Opt. Lett. 36, 1827-1829 (2011).
Kobus Kuipers
7. S. Ha, M. Spasenović, A.A. Sukhorukov, T.P. White, C.M. de Sterke, L. Kuipers, T.F. Krauss, Y.S. Kivshar, Slow-light and evanescent modes at interfaces in photonic crystal waveguides: optimal extraction from experimental near-field measurements, J. Opt. Soc. Am. B 28, 955-963 (2011).
8. M. Spasenović, T.P. White, S. Ha, A.A. Sukhorukov, T. Kampfrath, Y.S. Kivshar, C.M. de Sterke, T.F. Krauss, L. Kuipers, Experimental observation of evanescent modes at the interface to slow-light photonic crystal waveguides, Opt. Lett. 36, 1170-1172 (2011).
9. T. Kampfrath, A. Sell, G. Klatt, A. Pashkin, S. Mährlein, T. Dekorsy, M. Wolf, M. Fiebig, A. Leitenstorfer, R. Huber, Coherent Terahertz Control of Antiferromagnetic Spin Waves, Nat. Photonics 5, p. 31 (2011).
10. I. Sersic, C. Tuabilangana, T. Kampfrath, A.F. Koenderink, Magnetoelectric point scattering theory for metamaterial scatterers, Physical Review B 83, p. 245102 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses
1. M. Spasenović, Surface plasmon polaritons and light at interfaces: propagating and evanescent waves, University of Twente, June 30, 2011. e. Open Access publications
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. L. Kuipers, “Seeing” magnetic fields, NANOMETA 2011, Seefeld, Austria, January 3-6, 2011.
2. L. Kuipers, Nanophotonic light control, 10th CUDOS Workshop, Sydney, Australia, February 14-17, 2011.
3. L. Kuipers, Visualizing light fields in (nano)photonic structures, IAP Photonics@be Doctoral School, Oostduinkerkem, Belgium, March 28-30, 2011.
4. L. Kuipers, Mapping nanoscale light fields, 5th International Conference on Surface Plasmon Photonics, Busan, South Korea, May 15-20, 2011.
5. L. Kuipers, Light diversions, measuring the length of an individual localized state, WavePro, Crete, Greece, June 8-11, 2011.
Kobus Kuipers
6. D.M. Beggs, I.H. Rey, T. Kampfrath, T.F. Krauss, L. Kuipers, Monitoring and controlling slow light in photonic crystals, OSA Optics and Photonics, Slow and Fast Light, Toronto, Canada, June 12-15, 2011.
7. D.M. Beggs, T. Kampfrath, I.H. Rey, T.F. Krauss, L. Kuipers, Controlling and switching slow light in photonic crystal waveguides, 13th International Conference on Transparent Optical Networks, Stockholm, Sweden, June 26-30, 2011.
8. D. van Oosten, Light-matter interaction in photonic crystal nanocavities, 13th International Conference on Transparent Optical Networks, Stockholm, Sweden, June 26-30, 2011.
9. L. Kuipers, Interacting with light at the nanoscale, SPIE Optics + Photonics, San Diego, USA, August 21-25, 2011.
10. L. Kuipers, N. Rotenberg, Resolving light-matter interactions at the nanoscale, Metamaterials 2011, Barcelona, Spain, October 10-15, 2011.
11. L. Kuipers, A local view of slow light, Frontiers in Optics 2011, San Jose, USA, October 16-20, 2011.
12. L. Kuipers, Nanoscale light control, Tsukuba Nanotechnology Symposium, Tsukuba, Japan, December 15-17, 2011.
13. L. Kuipers, A local view of (slow) light, OSA Chapter Optics & Photonics Day 2011, Besançon, France, November 15, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. H. Acar, Electron Beam Induced Deposition of plasmonic nanostructures (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. A. Opheij, D.M. Beggs, R.J.P. Engelen, M. Spasenovic, D. Mori, T. Baba, L. Kuipers, Sharp features in light scattering of slow light in photonic crystal waveguides (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. D.M. Beggs, T. Kampfrath, T.F. Krauss, L. Kuipers, Ultrafast adiabatic frequency conversion of slow-light (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. L. Kuipers, H. Acar, Electron Beam Induced Deposition of plasmonic nanostructures (talk), SPP5, Busan, South Korea, May 15-21, 2011.
Kobus Kuipers
5. N. Rotenberg, T. Krijger, M. Spasenovic, L. Kuipers, Measuring plasmonic scattering coefficients of single subwavelength holes in a gold film (poster), SPP5, Busan, South Korea, May 15-21, 2011.
6. D. van Oosten, Playing with the magnetic field of light (talk), Fritz Haaber Institute Colloquium, Berlin, Germany, June, 2011.
7. L. Kuipers, N. Rotenberg, Near field study of the scattering of surface plasmon polaritons from single sub-wavelength holes (talk), MicroNano Conference, Ede, the Netherlands, November 15-16, 2011.
8. D.M. Beggs, I.H. Rey, N. Rotenberg, T. Kampfrath, T.F. Krauss, L. Kuipers, Ultrafast tuneable optical delay line base don indirect photonic transitions (poster), MicroNano Conference, Ede, the Netherlands, November 15-16, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. L. Kuipers, Chair, Nanophysics Advisory board of FOM.
2. L. Kuipers, Member, Oversight committee of ‘Toponderzoeksprogramma Fotonica’, a 50 M€ program on phonics at the Eindhoven University.
3. L. Kuipers, Member, FOm/v committee.
4. L. Kuipers, International Partner Investigator of CUDOS (Australia).
5. L. Kuipers, Board member, Smatmix consortium MEMPHIS.
6. L. Kuipers, Chair, CLEO Focus session at ECOC 2012, Amsterdam, the Netherlands.
7. L. Kuipers, Member, International steering committee, Surface Plasmon Photonics conference series.
8. L. Kuipers, Member, International program committees, EQEC 2011, CLEO/QELS 2011, CLEO/QELS 2012, NFO-12, SPIE Photonics Europe 2012.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects Kobus Kuipers
Collaboration with Philips in the MEMPHIS consortium.
1. Presentations on Electron Beam Induced Deposition for nanophotonics for FEI Company with IPP.
2. Program director Functional Nanophotonics of NanoNext. c. Performances on television, radio or at public events
L. Kuipers, Sustainability through Nanophotonics (talk), Amsterdam Innovatie Motor, May 10, 2011. d. Publications in public magazines, newspapers or on the internet
1. Interview for & cited in “Kunt u mij onzichtbaar maken meneer”, by Martijn van Calmthout, Volkskrant, page 116, December 24, 2011. e. Other professional products (software, prototypes, etc.)
Outreach
Albert Polman
Group A. Polman 2011
Funding FOM-Program Nanophotovoltaics (NPV) FOM-Program Plasmonics (PLSM) FOM-FEI IPP Program (FOM-FEI) NanoNextNL Program 6D Nanophotonic Devices (NN6D) NanoNextNL Program 9A Nano-Inspection and Characterization (NN9A) Multi-university Research Initiative USA (MURI) ERC Advanced Grant (ERC) Global Energy and Climate Project (GCEP)
Employees Benjamin Brenny (OIO) NN6D Toon Coenen (OIO) NN9A Jorik van de Groep (OIO) GCEP, NPV Marie Anne van de Haar (OIO) PLSM, ERC Claire van Lare (OIO) NPV Ruben Maas (OIO) ERC James Parson (PD) PLSM Pierpaolo Spinelli (OIO) NPV Rutger Thijssen (OIO) MURI, ERC Ernst Jan Vesseur (OIO) FOM-FEI Bas Zegers (stagiair) -
1. Academic publications a. Peer reviewed Publications
1. E.J.R. Vesseur, A. Polman, Controlled spontaneous emission in plasmonic whispering gallery antennas, Appl. Phys. Lett. 99, 231112 1-3 (2011).
2. E.J.R. Vesseur, A. Polman, Plasmonic whispering gallery cavities as optical nanoantennas, Nano Lett. 11, 5524–5530 (2011).
3. V.E. Ferry, A. Polman, H.A. Atwater, Modeling light trapping in nanostructured solar cells, ACS Nano 5, 10055-10064 (2011).
4. M.P. Busson, B. Rolly, B. Stout, N. Bonod, E. Larquet, A. Polman, S. Bidault, Optical and topological characterization of gold nanoparticle dimers linked by a single DNA double- strand, Nano Lett. 11, 5060–5065 (2011).
Albert Polman
5. M.A. Verschuuren, P. Gerlach, H.A. van Sprang, A. Polman, Improved performance of polarization-stable VCSELs by monolithic sub-wavelength gratings produced by soft nano- imprint lithography, Nanotechnology 22, 505201 1-9 (2011).
6. E.S. Barnard, T. Coenen, E.J.R. Vesseur, A. Polman, M.L. Brongersma, Imaging of hidden modes in ultra-thin plasmonic strip antennas by cathodoluminescence, Nano Lett. 11, 4265-4269 (2011).
7. V.E. Ferry, M.A. Verschuuren, M.C. van Lare, R.E.I. Schropp, H.A. Atwater, A. Polman, Optimized spatial correlations for broadband light trapping in ultra-thin a-Si:H solar cells, Nano Lett. 11, 4239-4245 (2011).
8. J. Parsons, A. Polman, A copper negative index metamaterial in the visible / neear infrared, Appl. Phys. Lett. 99, 161108 1-3 (2011).
9. J.H. Atwater, P. Spinelli, E.D. Kosten, J. Parsons, M.C. van Lare, J. van der Groep, J. García de Abajo, A. Polman, H.A. Atwater, Microphotonic parabolic light directors fabricated by two-photon lithography, App. Phys. Lett. 99, 151113 1-3 (2011).
10. T. Coenen, E.J.R. Vesseur, A. Polman, Angle-resolved cathodoluminescence spectroscopy, Appl. Phys. Lett. 99, 143103 1-3 (2011).
11. T. Coenen, E.J.R. Vesseur, A. Polman, A.F. Koenderink, Directional emission from plasmonic Yagi-Uda antennas probed by angle-resolved cathodoluminescence, Nano Lett. 11, 3779–3784 (2011).
12. S. Mokkapati, F.J. Beck, R. de Waele, A. Polman, K.R. Catchpole, Resonant nano- antennas for light trapping in plasmonic solar cells, J. Phys. D: Appl. Phys. 44, 185101 1-9 (2011).
13. P. Spinelli, M.C. van Lare, E. Verhagen, A. Polman, Controlling Fano lineshapes in plasmon-mediated light coupling into a substrate, Opt. Express 19, A303-A311 (2011).
14. P. Spinelli, M. Hebbink, R. de Waele, L. Black, F. Lenzmann, A. Polman, Optical impedance matching using coupled plasmonic nanoparticle arrays, Nano Lett. 11, 1760– 1765 (2011).
15. F.J. Beck, E. Verhagen, S. Mokkapati, A. Polman, K.R. Catchpole, Resonant SPP modes supported by discrete metal nanoparticles on high-index substrates, Opt. Express 19, A146- A156 (2011). Albert Polman b. Publications in proceedings or other journals
1. In memoriam Jacob Kistemaker (1917-2010), Levensberichten en Herdenkingen, Koninklijke Academie van Wetenschappen, p. 71 (2011). c. Contributions to scientific books (chapters or entire book ) d. PhD theses
1. V.E. Ferry, Light trapping in plasmonic solar cells, California Institute of Technology, May 6, 2011.
2. E.J.R. Vesseur, Electron beam imaging and spectroscopy of plasmonic nanoantenna resonances, Utrecht University, July 6, 2011. e. Open Access publications
1. F.J. Beck, E. Verhagen, S. Mokkapati, A. Polman, K.R. Catchpole, Resonant SPP modes supported by discrete metal nanoparticles on high-index substrates, Opt. Express 19, A146- A156 (2011).
2. P. Spinelli, M.C. van Lare, E. Verhagen, A. Polman, Controlling Fano lineshapes in plasmon-mediated light coupling into a substrate, Opt. Express 19, A303-A311 (2011).
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. A. Polman, Plasmonic metamaterials: from negative-index materials in the blue to improved solar cells in the red, NANOMETA 2011, Seefeld, Austria, January 3-6, 2011.
2. A. Polman, Light trapping in thin-film solar cells, Quantsol Winterschool Workshop, Salzburg, Austria, March 20-26, 2011.
3. A. Polman, Light trapping in plasmonic solar cells, International Workshop on Nanoplasmonics for Energy and the Environment, Sanxenxo, Spain, June 8-10, 2011.
4. J. Parsons, Optical metamaterials in the blue, International Conference on Materials for Advanced Technologies, Singapore, Singapore, June 26–July 1, 2011.
5. A. Polman, Light trapping in plasmonic solar cells, Karlsruhe Days of Optics, Karlsruhe, Germany, June 29-30, 2011.
Albert Polman
6. T. Coenen, Optics with electron beams, International Workshop on “Current Topics in Transmission Electron Microscopy: Plasmonics and Tomography”, Tegernsee, Germany, July 27-29, 2011.
7. E.J.R. Vesseur, Optics with electron beams, SPIE Optics + Photonics, San Diego, USA, August 21-25, 2011.
8. A. Polman, Cathodoluminescence nanoscopy: optics at 10 nm resolution, 5th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, Barcelona, Spain, October 10-13, 2011.
9. J. Parsons, Negative refraction and negative phase advance in 3D optical metamaterials in the blue, Frontiers in Optics 2011, San Jose, USA, October 16-20, 2011.
10. V. E. Ferry, Light trapping in plasmonic solar cells, Frontiers in Optics 2011, San Jose, USA, October 16-20, 2011.
11. A. Polman, Fabricating and probing optical metamaterials at the nanoscale, MRS Fall Meeting, Boston, USA, November 30-December 4, 2011.
12. A. Polman, Efficient light trapping in metallic and dielectric nanostructured thin-film solar cells, MRS Fall Meeting, Boston, USA, November 30 - December 4, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. T. Coenen, Spatially resolved directional emission from plasmonic Yagi Uda antennas (talk), NANOMETA 2011, Seefeld, Austria, January 3-6, 2011.
2. T. Coenen, Spatially resolved directional emission from plasmonic Yagi Uda antennas (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. J. Parsons, A negative index metamaterial in the UV / visible (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. A. Polman, Cathodoluminescence plasmon microscopy (talk), University of Kaiserslautern, Kaiserslautern, Germany, February 11, 2011.
5. J. Parsons, A negative index metamaterial in the UV / visible (talk), MRS Spring Meeting, San Francisco, USA, April 25-29, 2011.
Albert Polman
6. M.C. van Lare, V.E. Ferry, M.A. Verschuuren, R.E.I. Schropp, H.A. Atwater, A. Polman, Light trapping in ultra-thin a-Si:H solar cells (poster), MRS Spring Meeting, San Francisco, USA, April 25-29, 2011.
7. P. Spinelli, J. van de Groep, M. Hebbink, R. de Waele, L. Black, F. Lenzmann, A. Polman, Plasmonic light trapping in thin-film solar cells (poster), International Workshop on Nanoplasmonics for Energy and the Environment, Sanxenxo, Spain, June 8-10, 2011.
8. M.C. van Lare, V.E. Ferry, M.A. Verschuuren, R.E.I. Schropp, H.A. Atwater, A. Polman, Light trapping in ultra-thin a-Si:H solar cells (poster), International Workshop on Nanoplasmonics for Energy and the Environment, Sanxenxo, Spain, June 8-10, 2011.
9. R. Thijssen, T. Kippenberg, A. Polman, Optomechanics with Plasmons (poster), QOMNS 2011, Ascona, Switzerland, July 24-28, 2011.
10. P. Spinelli, Black silicon using resonant silicon surface nanoscatterers (talk), 26th EU- PVSEC, Hamburg, Germany, September 6, 2011.
11. M.C. van Lare, Light trapping in thin-film a-Si:H solar cells (talk), European Photovoltaic Solar Energy Conference, Hamburg, Germany, September 25, 2011.
12. T. Coenen, Angle-resolved cathodoluminenscence spectroscopy on plasmonic ridge nanoantennas (talk), Summer School on Plasmonics 2, Porquerolles, France, October 3- 7, 2011.
13. R.C. Maas, J. Parsons, E. Verhagen, A. Polman, Experimental demonstration of negative refraction in the UV/blue (poster), Summer School on Plasmonics 2, Porquerolles, France, October 3-7, 2011.
14. P. Spinelli, J. van de Groep, M.C. van Lare, F. Lenzmann, V.E. Ferry, M.A. Verschuuren, R.E.I. Schropp, H.A. Atwater, A. Polman, Light trapping in thin film solar cells using metal and dielectric nanostructures (poster), GCEP Research Symposium 2011, Stanford, USA, October 5, 2011.
15. T. Coenen, Angle-resolved cathodoluminenscence spectroscopy on plasmonic ridge nanoantennas (talk), 5th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, Barcelona, Spain, October 10-13, 2011.
Albert Polman
16. R.C. Maas, J. Parsons, E. Verhagen, A. Polman, Experimental demonstration of negative refraction in the UV/blue (poster), 5th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, Barcelona, Spain, October 10- 13, 2011.
17. J. van de Groep, Resonant optically transparent network electrode (poster), Sunday Conference, Utrecht, the Netherlands, October 12, 2011.
18. J. Parsons, A negative index metamaterial in the UV / visible (talk), Frontiers in Optics 2011, San Jose, USA, October 16-20, 2011.
19. A. Polman, Moonwalk for light in il Museo Galileo (talk), Symposium 20 years LENS, Florence, Italy, October 18, 2011.
20. A. Polman, Light trapping in thin-film solar cells (talk), iNano Institute, Aarhus University, Aarhus, Denmark, November 11, 2011.
21. A. Polman, Moonwalk for light: optical metamaterials in the UV (talk), iNano Institute, Aarhus University, Aarhus, Denmark, November 11, 2011.
22. J. van de Groep, A new method to characterize light trapping in ultra-thin solar cells (talk)¸ MicroNano Conference, Ede, the Netherlands, November 15-16, 2011.
23. T. Coenen, E.J.R. Vesseur, A. Polman, Angle-resolved cathodoluminenscence spectroscopy on gold plasmonic nanoantennas (poster), MicroNano Conference, Ede, the Netherlands, November 15-16, 2011.
24. J. van de Groep, Direct measurement of light trapping in ultra-thin Si layers (talk), MRS Fall Meeting, Boston, USA, November 30-December 4, 2011.
25. A. Polman, Optical metamaterial integrated circuits (talk), Bell Laboratories Alcatel- Lucent, New Jersey, USA, December 2, 2011. c. Awards and recognitions
1. M.C. van Lare, Poster prize at International Workshop on Nanoplasmonics for Energy and the Environment, Sanxenxo, Spain, June 8-10, 2011.
2. J. van de Groep, Shell Jong Talent Afstudeerprijs for his master thesis: light trapping in thin silicon waveguides by plasmon-mediated mode coupling, November 2011.
3. E. Verhagen, Eervolle vermelding Christiaan Huygensprijs voor het beste proefschrift in de Betawetenschappen, 2011. Albert Polman d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. A. Polman, Member, Royal Netherlands Academy of Arts and Sciences (KNAW).
2. A. Polman, Co-organizer, Focus session Advanced silicon solar cells, Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. A. Polman, Contribution to National Science Agenda Royal Dutch Academy of Sciences (KNAW), Can the sun fulfil our energy needs?.
4. A. Polman, Co-guest edotor, Green photonics, Special issue of J. Opt. (2011).
5. A. Polman, Member, Editorial Board, Nano Lett. (ACS).
6. A. Polman, Member, Program committee, Joint Solar Program.
7. A. Polman, Member, Advisory Board, Centre of Excellence for Advanced Silicon Photovoltaics and Photonics, University of New South Wales (Australia).
8. A. Polman, Member, Young Energy Scientists (YES!), Advisory Board (FOM).
9. A. Polman, Member, Editorial Advisory Board, Book “Everyting you always wanted to know about metamaterials”, IOP (UK).
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects
1. Collaboration with Philips Research (M.A. Verschuuren) on soft imprint lithography.
2. Collaboration with Philips Research (H.A. van Sprang) on nanophotonics, Industrial Partnership Program Improved Solid State Lighting.
3. Presentations on focused ion beam milling for FEI Company within Industrial Partnership Program.
4. Board member of NanoNextNL: 125 M€ national nanoscience and technology program.
Albert Polman
5. Presentation at Nuon Helianthos on Light trapping in ultra-thin a-Si solar cells, February 15, 2011.
6. Technology transfer to Delmic B.V., on the angle-resolved cathodoluminescence imaging spectroscopy technique (ARCIS).
7. We held a special summer school, in which several renowned researchers from all over the world visited our group for several weeks to carry out joint experiments, brainstorm about future research directions, and write papers on ongoing collaborations. c. Performances on television, radio or at public events
1. A. Polman, Superlenzen en onzichtbaarheidsmantels – licht op de nanoschaal, Studium Generale, Groningen, the Netherlands, March 29, 2011.
2. A. Polman, Thin-film solar cells, Annual meeting Dutch Physical Society, Amsterdam, the Netherlands, April 15, 2011.
3. A. Polman, Moonwalk for light, NWO/KNAW/Museon/De Volkskrant public event, the Hague, November 9, 2011. d. Publications in public magazines, newspapers or on the internet
1. Licht strak het hoekje om, De Volkskrant, February 19, 2011.
2. Science Park centrum van zonnestroom: AMOLF stort zich op goedkope zonnecellen, Het Parool, February 21, 2011.
3. Antenne voor zichtbaar licht is de kleinste ooit, NRC Handelsblad, August 11, 2011.
4. Zomerserie de Werkplaats: Schotels en antennes, maar dan honderd maal kleiner dan de dikte van een haar, NRC Handelsblad, August 14, 2011.
5. Moonwalk voor licht, De Volkskrant, October 1, 2011.
6. Steve Jobs is de Henry Ford van deze tijd, NRC Handelsblad, October 8, 2011.
7. Scriptieprijs Shell voor expert in zonnecellen, De Stentor, November 21, 2011.
8. Het gaat niet om het geld, maar om het delen van kennis; Amolf-directeur Albert Polman begint webwinkel voor MKB, De Volkskrant, November 23, 2011. Albert Polman e. Other professional products (software, prototypes, etc.)
1. 2D-Fourier: App published in Apple App store: calculates two-dimensional Fourier transform of images taken with a smart phone, and vice versa. Provides basic insight in the concept of Fourier transform.
2. Ultra-thin silicon solar cells based on light trapping nanopatterns.
3. Broadband omnidirectional antireflection coating based on silicon surface Mie scatterers.
Outreach
1. A. Polman, lectures in master course Advanced Materials and Energy Physics (AMEP), University of Amsterdam.
2. A. Polman, Student lecture on photovoltaics, University of Amsterdam, March 30, 2011.
Ad Lagendijk
Group A. Lagendijk 2011
Funding FOM-Program Photons in Complex Media (PCM) FOM-Shell IPP program iPOG (iPOG) FOM-Projectruimte (PR) STW project (STW)
Employees Jochen Aulbach (OIO) iPOG Timmo van der Beek (OIO) PCM Ramy El-Dardiry (OIO) PR Bergin Gjonai (OIO) PCM Patrick Johnson (PD) STW
1. Academic publications a. Peer reviewed Publications
1. M.D. Leistikow, A.P. Mosk, E. Yeganegi, S.R. Huisman, A. Lagendijk, W.L. Vos, Inhibited spontaneous emission of quantum dots observed in a 3D photonic band gap, Phys. Rev. Lett. 107, 193903 1-5 (2011).
2. O.L. Muskens, T. van der Beek, A. Lagendijk, Angle dependence of the frequency correlation in random photonic media: Diffusive regime and its breakdown near localization, Phys. Rev. B 84, 035106 1-9 (2011).
3. B. Gjonaj, J. Aulbach, P.M. Johnson, A.P. Mosk, L. Kuipers, A. Lagendijk, Active spatial control of plasmonic fields, Nat. Photonics 5, 360–363 (2011).
4. E.G. van Putten, D. Akbulut, J. Bertolotti, W.L. Vos, A. Lagendijk, A.P. Mosk, Scattering lens resolves sub-100 nm structures with visible light, Phys. Rev. Lett. 106, 193905 1-4 (2011).
5. E.G. van Putten, A. Lagendijk, A.P. Mosk, Optimal concentration of light in turbid materials, J. Opt. Soc. Am. B 28, 1200-1203 (2011).
6. A. Lagendijk, Fundamental optical physics: Uncovering superabsorption, Nat. Photonics 5, 252–253 (2011).
7. R.G.S. El-Dardiry, A. Lagendijk, Tuning random lasers by engineerd absorption, Appl. Phys. Lett. 98, 161106 1-3 (2011).
8. S. Smolka, O.L. Muskens, A. Lagendijk, P. Lodahl, Angle-resolved photon-coincidence measurements in a multiple-scattering medium, Phys. Rev. A 83, 043819 1-6 (2011).
Ad Lagendijk
9. J. Aulbach, B. Gjonaj, P.M. Johnson, A.P. Mosk, A. Lagendijk, Control of light transmission through opaque scattering media in space and time, Phys. Rev. Lett. 106, 103901 1-4 (2011).
10. R.G.S. El-Dardiry, S. Faez, A. Lagendijk, Classification of light sources and their interaction with active and passive environments, Phys. Rev. A 83, 031801(R) 1-4 (2011).
11. S. Faez, A. Lagendijk, A. Ossipov, Critical scaling of polarization waves on a heterogeneous chain of resonators, Phys. Rev. B 83, 075121 1-12 (2011).
12. F. van Beijnum, E.G. van Putten, A. Lagendijk, A.P. Mosk, Frequency bandwidth of light focused through turbid media, Opt. Lett. 36, 373-375 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses
1. S.E.P. Faez, Hitchhikers' Guide to the Light Cage, University of Amsterdam, September 16, 2011.
2. P. S. Scalia, Optical noise and mesoscopic correlations in random media, University of Amsterdam, November 2, 2011. e. Open Access publications
1. R.G.S. El-Dardiry, S. Faez, A. Lagendijk, Probing the dynamics of Anderson localization through spatial mapping. [ arXiv:1201.0635 ]
2. S.R. Huisman, G. Ctistis, S. Stobbe, A.P. Mosk, J.L. Herek, A. Lagendijk, P. Lodahl, W.L. Vos, P.W.H. Pinkse, Photonic-Crystal Waveguides with Disorder: Measurement of a Band-Edge Tail in the Density of States. [ arXiv:1201.0624 ]
3. E.G. van Putten, A. Lagendijk, A.P. Mosk, Non-Imaging Speckle Interferometry forHigh Speed Nanometer-Scale Position Detection. [ arXiv:1111.4120 ]
4. M.D. Leistikow, A.P. Mosk, S.R. Huisman, A. Lagendijk, W.L. Vos, Inhibited spontaneous emission of quantum dots observed in a 3D photonic band gap. [ arXiv:1106.1681 ]
5. O.L. Muskens, T. van der Beek, A. Lagendijk, Angle-dependence of the frequency correlation in random photonic media: the diffusive regime and its breakdown near localization. [ arXiv:1103.5714 ]
6. E.G. van Putten, D. Akbulut, J. Bertolotti, W.L. Vos, A. Lagendijk, A.P. Mosk, Scattering Lens Resolves sub-100 nm Structures with Visible Light. [ arXiv:1103.3643 ] Ad Lagendijk
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. A. Lagendijk, Photonic Light Sources, WavePro, Crete, Greece, June 8-11, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. R.G.S. El-Dardiry, S. Faez, A. Lagendijk, Classification of light sources and their interaction with active and passive environments (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. B. Gjonaj, J. Aulbach, P.M. Johnson, A.P. Mosk, L. Kuipers, A. Lagendijk, Digital Plasmonics (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. T. van der Beek, Frequency correlation imaging of paint and other opaque layers (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. P. Johnson, New Optical Probes of Paint and Other Opaque Layers (talk), STW Meeting, Amsterdam, the Netherlands, February 8, 2011.
5. J. Aulbach, Control of light transmission through opaque scattering media in space and time (talk), Deutsche Physikalische Gesellschaft Spring Meeting, Dresden, Germany, March 13-18, 2011.
6. J. Aulbach, Ultimate design and control of complex wave fronts (talk), Shell/FOM iPoG-I Meeting, Rijswijk, the Netherlands, May, 2011.
7. T. van der Beek, Angle-dependence of the frequency correlation in random media (talk), Universiteit Twente, Enschede, the Netherlands, June 20, 2011.
8. R.G.S. El-Dardiry, Classification of light sources and their interaction with active and passive environments (talk), SPIE Optics + Photonics, San Diego, USA, August 21-25, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. A. Lagendijk, Organizer, Focus session, Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. A. Lagendijk, Member, Royal Netherlands Academy of Arts and Sciences (KNAW).
Ad Lagendijk
3. A. Lagendijk, Program manager, FOM-Program Waves in Complex Media.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects
1. Collaboration with Shell within FOM-IPP program iPOG.
2. Collaboration with Philips Lighting through STW granted proposal.
3. Collaboration with AKZO and Dutch Cultural Heritage Foundation, through granted STW.
4. Collaboration with Philips Lighting through FP7-proposal c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet
1. G. van Diepen, A. Lagendijk, Maak alle ict-beveiliging openbaar, NRC, Opinie & Debat, October 8, 2011. e. Other professional products (software, prototypes, etc.)
Outreach
1. Lagendijk Group, Shaped pulses make opaque film see-through, New Scientist 2801, March, 2011.
2. A. Lagendijk, S. Faez, R.G.S. El-Dardiry, Survival Guide for Scientists, 1 trimester lecture series at University of Amsterdam.
3. A. Lagendijk e.a., Survival blog for scientists, n.a.v. zijn boek Interferentie, blog van Ad Lagendijk. Jaime Gómez Rivas
Group J. Gómez Rivas 2011
Funding FOM-IPP Improved solid state light sources (SSL) FOM-Program Nanophotovoltaics (NPV) FOM-Program Plasmonics (PLSM) ERC Starting Grant (ERC) NanoNextNL Program 6D Active Photonic Devices (NN6D) Grant Japanese government (JAPAN) EU-FP7 Project ULTRA (ULTRA)
Employees Christophe Arnold (PD) NPV Tommy Barten (stagiair) SSL Audrey Berrier (PD) ULTRA Silke Diedenhofen (PD) NPV Yannik Fontanta (stagiair) NPV George Georgiou (OIO) ERC Grzegorz Grzela (OIO) NPV Gabriel Lozano Barbero (PD) NN6D Shunsuke Murai (gast) JAPAN Giuseppe Pirruccio (OIO) SSL Said Rahimzadeh-Kalaleh Rodriguez (OIO) SSL Martijn Schaafsma (OIO) PLSM Hemant Tyagi (PD) SSL Gabrielle Vecchi (PD) MLS Frank Verniers (stagiair) SSL Yichen Zhang (OIO) MLS
1. Academic publications a. Peer reviewed Publications
1. S.R.K. Rodriguez, A. Abass, B. Maes, O.T.A. Janssen, G. Vecchi, J. Gómez Rivas, Coupling bright and dark plasmonic lattice resonances, Phys. Rev. X 1, 021019 1-7 (2011).
2. S.L. Diedenhofen, R. Algra, E.P.A.M. Bakkers, J. Gómez Rivas, Strong modification of the reflection from birefringent layers of semiconductor nanowires by nanoshells, Appl. Phys. Lett. 99, 201108 1-3 (2011).
3. A. Berrier, P. Offermans, R. Cools, B. van Megen, W. Knoben, G. Vecchi, J. Gómez Rivas, M. Crego-Calama, S.H. Brongersma, Enhancing the gas sensitivity of surface plasmon resonance with a nanoporous silica matrix, Sens. Actuators B 160, 181-188 (2011).
Jaime Gómez Rivas
4. Y. Zhang, A. Berrier, J. Gómez Rivas, Long-range surface plasmon polaritons at THz frequencies in thin semiconductor layers, Chin. Opt. Lett. 9, 110014 1-3 (2011).
5. A. Berrier, R. Cools, C. Arnold, P. Offermans, M. Crego-Calama, S.H. Brongersma, J. Gómez Rivas, Active control of the strong coupling regime between porphyrin excitons and surface plasmon polaritons, ACS Nano 5, 6226–6232 (2011).
6. S.L. Diedenhofen, O.T.A. Janssen, M. Hocevar, A. Pierret, E.P.A.M. Bakkers, H.P. Urbach, J. Gómez Rivas, Controlling the directional emission of light by periodic arrays of heterostructured semiconductor nanowires, ACS Nano 5, 5830–5837 (2011).
7. P. Offermans, M.C. Schaafsma, S.R.K. Rodriguez, Y. Zhang, M. Crego-Calama, S.H. Brongersma, J. Gómez Rivas, Universal scaling of the figure of merit of plasmonic sensors, ACS Nano 5, 5151–5157 (2011).
8. S.L. Diedenhofen, O.T.A. Janssen, G. Grzela, E.P.A.M. Bakkers, J. Gómez Rivas, Strong geometrical dependence of the absorption of light in arrays of semiconductor nanowires, ACS Nano 5, 2316–2323 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book )J. Gómez Rivas, Y. Zhang, A. Berrier, THz plasmonics in Handbook of terahertz technology for imaging and sensing (Woodhead Publishing). d. PhD theses
1. Y. Zhang, Long-range surface polaritons in thin layers of absorbing materials, Eindhoven University of Technology, September 6, 2011. e. Open Access publications
1. S.R.K. Rodriguez, A. Abass, B. Maes, O.T.A. Janssen, G. Vecchi, J. Gómez Rivas Coupling Bright and Dark Plasmonic Lattice Resonances, Phys. Rev. X 1, 021019 (2011).
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. J. Gómez Rivas, Tailoring the scattering of light by nanowires for photovoltaics, Themanic Days on Nanowires and Applications, IEMN, Villeneuve d'Ascq, France, January 20- 21, 2011.
2. J. Gómez Rivas, Active plasmonic surfaces and antennas at THz frequencies, International Workshop on Optical Terahertz Science and Technology 2011, Santa Barbara, USA, Jaime Gómez Rivas
March 13-17, 2011.
3. J. Gómez Rivas, Collective plasmonic resonances, Plasmonics 2011, XVII Argentinan Congress of Chemical Physics and Inorganic Physics, Cordoba, Argentina, May 7, 2011.
4. J. Gómez Rivas, Collective resonances in plasmonic crystals, WavePro, Crete, Greece, June 8-11, 2011.
5. J. Gómez Rivas, Plasmonic antennas and phased arrays, 37th European Conference and Exhibition on Optical Communication, Symposium “Nanophotonics for optical communications”, Geneva, Switzerland, September 21, 2011.
6. J. Gómez Rivas, Nanoantennas, nanowires and crystals, The Herodot workshop Light generation, conversion and sensing devices and technologies, Philips Research, Eindhoven, the Netherlands, September 20-21, 2011.
7. A. Berrier, Tracking biological entities using Terahertz plasmonic resonances, Workshop "Terahertz Technologies: from Devices to Systems", European Microwave Integrated Circuits Conference (EuMIC), Manchester, UK, October 9-14, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. J. Gómez Rivas, Tailoring the scattering of light by nanowires for photovoltaics (talk), Joint Solar Program Meeting, Shell, Amsterdam, the Netherlands, January 13, 2011.
2. J. Gómez Rivas, Collective resonances in plasmonic crystals (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. A. Berrier, R. Ulbricht, M. Bonn, J. Gómez Rivas, Ultrafast control of plasmonic resonators: the privilege of semiconductors at terahertz frequencies (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. Y. Zhang, C. Arnold, J. Gómez Rivas, Modification of the spontaneous emission of dye molecules by interaction with surface modes (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
5. M.C. Schaafsma, A. Berrier, S.R.K. Rodriguez, J. Gómez Rivas, Active control of collective THz plasmonic resonances (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
6. G. Grzela, S.L. Diedenhofen, O.T.A. Janssen, E.P.A.M. Bakkers, J. Gómez Rivas, Extraordinary broadband and omnidirectional light absorption in arrays of semiconductor nanowires (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, Jaime Gómez Rivas
2011.
7. G. Grzela, D. Hourlier, S.L. Diedenhofen, O.T.A. Janssen, E.P.A.M. Bakkers, J. Gómez Rivas, Light absorption in ordered and disordered arrays of semiconductor nanowires (poster), Themanic Days on Nanowires and Applications, IEMN, Villeneuve d'Ascq, France, January 20-21, 2011.
8. S.L. Diedenhofen, Propagation of Light in Ensembles of Semiconductor Nanowires for Photovoltaic Applications (talk), Universität Duisburg-Essen, Solid-State Electronics Department, Duisburg, Germany, January 26, 2011.
9. G. Grzela, S.L. Diedenhofen, O.T.A. Janssen, E.P.A.M. Bakkers, J. Gómez Rivas, Extraordinary broadband and omnidirectional light absorption in arrays of semiconductor nanowires (poster), 473. WE-Heraeus-Seminar, III-V Nanowires - Growth, Properties and Applications, Physikzentrum Bad Honnef, Bad Honnef, Germany, February 21- 23, 2011.
10. J. Gómez Rivas, Nano-optics for lighting (talk), Lighting-Optics Network Meeting, Philips Lighting, Eindhoven, the Netherlands, February 25, 2011.
11. J. Gómez Rivas, Plasmonic nano-emitters and sensors (talk), Fotonica Evenement 2011, Nieuwegein, the Netherlands, March 29-30, 2011.
12. J. Gómez Rivas, Nanophotonic and plasmonic sensors (talk), CIN2, Barcelona, Spain, April 1, 2011.
13. A. Berrier, R. Ulbricht, M. Bonn, J. Gómez Rivas, Semiconductor THz antennas: from ultrafast switching to enhanced THz biological sensing (talk), SPP5, Busan, South Korea, May 15-20, 2011.
14. A. Berrier, R. Ulbricht, M. Bonn, J. Gómez Rivas, Active control on extraordinary THz transmission through ultrathin semiconductor films (poster), SPP5, Busan, South Korea, May 15-20, 2011.
15. A. Berrier, P. Offermans, R. Cools, C. Arnold, S.H. Brongersma, M. Crego-Calama, J. Gómez Rivas, Molecular activation of exciton polariton coupling in a dye-gold stack by nitrogen dioxide gas (poster), SPP5, Busan, South Korea, May 15-20, 2011.
16. J. Gómez Rivas, Plasmonic nano-emitters and sensors (talk), IMEC, Leuven, Belgium, May 16, 2011.
17. S.R.K. Rodriguez, A. Abass, B. Maes, O.T.A. Janssen, J. Gómez Rivas, Coupling Bright and Dark Plasmonic Lattice Resonances (talk), International School of Atomic and Molecular Spectroscopy, 28th Course - Nanooptics: Plasmonics, Photonic Crystals, Jaime Gómez Rivas
Metamaterials and Sub-Wavelength Resolution, Erice, Italy, July 3-18, 2011.
18. S.R.K. Rodriguez, P. Offermans, M.C. Schaafsma, Y. Zhang, M. Crego-Calama, S.H. Brongersma, J. Gómez Rivas, Universal Scaling of the Figure of Merit of Plasmonic Sensors (poster), International School of Atomic and Molecular Spectroscopy, 28th Course - Nanooptics: Plasmonics, Photonic Crystals, Metamaterials and Sub- Wavelength Resolution, Erice, Italy, July 3-18, 2011.
19. A. Berrier, M.C. Schaafsma, J. Gómez Rivas, Interaction of terahertz radiation with microorganisms: towards contactless bacterial recognition (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
20. S.R.K. Rodriguez, A. Abass, B. Maes, O.T.A. Janssen, J. Gómez Rivas, Coupling Bright and Dark Plasmonic Lattice Resonances (and tunable stop-gaps) (poster), Summer School On Plasmonics 2, Porquerolles, France, October 3-7, 2011.
21. G. Lozano, O. Sánchez-Sobrado, M.E. Calvo, A. Sánchez-Iglesias, L.M. Liz-Marzán, H. Míguez, Optical absorption of gold nanoparticles: interplay between photonic and plasmonic resonances (poster), Summer School On Plasmonics 2 (SSOP 2), Porquerolles, France, October 3-7, 2011.
22. G. Pirruccio, Y. Zhang, C. Arnold, G. Lozano, R. Gomez, Z. Hens, J. Gómez Rivas, Modified spontaneous emission assisted by guided modes in very thin absorbing layers (poster), Summer School On Plasmonics 2 (SSOP 2), Porquerolles, France, October 3- 7, 2011. c. Awards and recognitions
1. S.L. Diedenhofen, FOM Hoofdstukvalorisatie Prijs, for PhD thesis Propagation of Light in Ensembles of Semiconductor Nanowires, Eindhoven University of Technology, December 2010. d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. J. Gómez Rivas, Member, Scientific Advisory Board, Spanish Research program Nanolight.
2. J. Gómez Rivas, Co-organizer, Symposium ‘De eeuw van het foton: van quantum entanglement tot biophotonics’ at Fysica 2011.
3. J. Gómez Rivas, Co-organizer, Focus Session ‘Use inspired fundamental physics in nano-optics, organic optoelectronics and electron sources’ at Physics@FOM 2012.
Jaime Gómez Rivas
4. J. Gómez Rivas, Reviewer, ERC Starting Grants.
5. J. Gómez Rivas, Member, PhD Thesis committee Pieter Neutens, Imec and University of Leuven, Belgium.
6. J. Gómez Rivas, Member, PhD Thesis committee Ljubisa Babic, University of Leiden.
7. J. Gómez Rivas, Member, PhD Thesis committee Memet A. Dundarm Eindhoven University of Technology.
3. Knowledge transfer (societal and economic) a. Patents
1. S.R.K. Rodriguez, R. Balkenende, J. Gómez Rivas, Nanoantenna arrays for efficient and designed LED emission, European patent application.
2. J. Gómez Rivas, R. Sczech, P. Haring Bolivar, A. Berrier, C. Arnold, V. Giannini, Verfahren und Vorrichtung zur Hochfrequenzanalytik an flüssigen Systemen.
3. D. de Boer, S.R.K. Rodriguez, S.L. Diedenhofen, J. Gómez Rivas, Luminescent solar concentrator with nanostructured luminescent layer. b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects
1. Philips Research (H. van Sprang): Photonic materials and devices.
2. Holst Center (M. Crego-Calama, S.H. Brongersma): Gas sensing. c. Optredens op televisie, radio of bij publieksevenementen d. Optredens op televisie, radio of bij publieksevenementen e. Other professional products (software, prototypes, etc.)
Outreach
1. J. Gómez Rivas, Photovoltaics, lectures in Master Course Advanced Materials and Energy Physics (AMEP), University of Amsterdam (2010, 2011).
2. J. Gómez Rivas, Nanoplasmonics, lecture in master course Functional materials and Nanotechnology, Eindhoven University of Technology (2011).
Jaime Gómez Rivas
3. S.R.K. Rodriguez, G. Grzela, Experiments presented during Physics@FOM 2011: Modified Light emission with plasmonic antennas and light in graded refractive index media.
Femius Koenderink
Group A.F. Koenderink 2011
Funding FOM-Program Plasmonics (PLSM) FOM-Projectruimte (PR) FOM-Program Nanoscale Quantum Optics (NQO) NanoNextNL Program 6B Functional Nanophotonics (NN6B) NanoNextNL Program 6D Active Photonic Devices (NN6D) NWO-VIDI (VIDI) NanoNed/AMOLF
Employees Felipe Bernal Arango (OIO) VIDI Martin Frimmer (OIO) PLSM Andrej Kwadrin (OIO) PR Lutz Langguth (OIO) NN6D Abbas Mohtashami (OIO) VIDI Hinke Schokker (OIO) NQO Ivana Sersic (OIO) NanoNed/AMOLF
1. Academic publications a. Peer reviewed Publications
1. O.L. Muskens, A.F. Koenderink, W.L. Vos, Broadband coherent backscattering spectroscopy of the interplay between order and disorder in three-dimensional opal photonic crystals, Phys. Rev. B 83, 155102 (2011).
2. I. Sersic, C. Tuambilangana, T. Kampfrath, A.F. Koenderink, Magneto-electric point scattering theory for metamaterial scatterers, Phys. Rev. B 83, 245102:1-12, (2011).
3. A. de Hoogh, B. Hommersom, A.F. Koenderink, Wavelength-selective addressing of visible and near-infrared plasmon resonances for SU8 nanolithography, Opt. Express 19, 11405-11414 (2011).
4. I. Sersic, C. Tuambilangana, A.F. Koenderink, Fourier microscopy of single plasmonic scatterers, New. J. Phys 13, 083019:1-15 (2011).
5. T. Coenen, E.J.R. Vesseur, A. Polman, A.F. Koenderink, Directional emission from plasmonic Yagi Uda antennas probed by angle-resolved cathodoluminescence spectroscopy, Nano Lett. 11, 3779-3784 (2011).
6. M. Frimmer, Y. Chen, A.F. Koenderink, Scanning emitter lifetime imaging microscopy for spontaneous emission control, Phys. Rev. Lett. 107, 123602 (2011).
Femius Koenderink
7. Y. Chen, M. Wubs, J. Mørk, A.F. Koenderink, Coherent single photon absorption by single emitters coupled to 1D nanophotonic waveguides, New. J. Phys 13, 103010: 1-22 (2011). b. Publications in proceedings or other journals
I. Sersic, C. Tuambilangana, T. Kampfrath, A.F. Koenderink, Resonant multiple scattering by metamaterial clusters, Proceedings of Metamaterials 2011 (5th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, Barcelona, Spain, October 10-13, 2011. c. Contributions to scientific books (chapters or entire book ) d. PhD theses e. Open Access publications
1. O.L. Muskens, A.F. Koenderink, W.L. Vos, Broadband coherent backscattering spectroscopy of the interplay between order and disorder in three-dimensional opal photonic crystals (2011). [ arXiv:1010.5008 ]
2. I. Sersic, C. Tuambilangana, T. Kampfrath, A.F. Koenderink, Magneto-electric point scattering theory for metamaterial scatterers (2011). [ arXiv:1012.3671 ]
3. I. Sersic, C. Tuambilangana, A.F. Koenderink, Fourier microscopy of single plasmonic scatterers, New. J. Phys 13, 083019:1-15 (2011).
4. M. Frimmer, Y. Chen, A.F. Koenderink, Scanning emitter lifetime imaging microscopy for spontaneous emission control (2011). [ arXiv:1104.4073 ]
5. Y. Chen, M. Wubs, J. Mørk, A.F. Koenderink, Coherent single photon absorption by single emitters coupled to 1D nanophotonic waveguides, New. J. Phys 13, 103010: 1-22 (2011).
6. M. Frimmer, T. Coenen, A.F. Koenderink, Signature of a Fano-resonance in a plasmonic meta-molecule's local density of optical states (2011). [ arXiv:1109.5407 ]
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. A.F. Koenderink, Magneto-electric Point Scatterers for Metamaterials, Antennas and Periodic Media, WavePro, Crete, Greece, June 8-11, 2011.
2. I. Sersic, Probing Radiation Patterns of Single Plasmonic and Metamaterials Structures, WavePro, Crete, Greece, June 8-11, 2011.
Femius Koenderink
3. A.F. Koenderink, How magneto-electric and plasmonic scatterers control photons and emitters, Advanced DPG Physics School Nanoantennas and Hybrid Quantum Systems, Bad Honnef, Germany, September 25-30, 2011.
4. A.F. Koenderink, Resonant nanoscatterer antennas to control photons and emitters, Annual Meeting of IMPRS Optics & Imaging, Bamberg, Germany, September 26-30, 2011.
5. A.F. Koenderink, Resonant multiple scattering by metamaterial clusters, 5th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, Barcelona, Spain, October 10-13, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. E.J.R. Vesseur, A.F. Koenderink, A. Polman, Spatially resolved directional emission from plasmonic Yagi Uda antennas (talk), NANOMETA 2011, Seefeld, Austria, January 3-6, 2011.
2. I. Sersic, C. Tuambilangana, T. Kampfrath, A.F. Koenderink, Split Ring Resonators as Point Scatterers (poster), NANOMETA 2011, Seefeld, Austria, January 3-6, 2011.
3. A.F. Koenderink, Subwavelength plasmonic and magnetic resonators to control photons and emitters (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. I. Sersic, C. Tuambilangana, T. Kampfrath, A.F. Koenderink, How does a magnetoelectric scatterer radiate (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
5. I. Sersic, B. Hommersom, A. de Hoogh, A.F. Koenderink, Experimental techniques for probing radiation patterns of plasmonic and metamaterial nanostructures (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
6. M. Frimmer, A. Kwadrin, A. Mohtashami, F. Bernal Arango, A.F. Koenderink, Interaction of emitters with plasmonic and metamaterial structures (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
7. M. Frimmer, A.F. Koenderink, Spontaneous emission control by nanopositioning (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
8. A.F. Koenderink, Controlling single photons and single molecules with plasmonics and metamaterials (talk), Fritz-Haber Institut der Max-Planck Gesellschaft, Dept. Physical Chemistry, Berlin, Germany, May 2, 2011.
Femius Koenderink
9. L. Langguth, A.F. Koenderink, Programmable plasmonic structures for efficient Fluoresence Correlation Spectroscopy (poster), Summer School on Plasmonics 2, Porquerolles, France, October 3-7, 2011.
10. T. Coenen, E.J.R. Vesseur, A.F. Koenderink, A. Polman, Angle-resolved cathodoluminescence spectroscopy on plasmonic nanoantennas (talk), 5th International Congress on Advanced Electromagnetic Materials in Microwaves and Optics, Barcelona, Spain, October 10-13, 2011.
11. I. Sersic, C. Tuambilangana, A.F. Koenderink, Fourier microscopy of single plasmonic and metamaterial scatterers (poster), NNV-AMO 2011, Lunteren, the Netherlands, October 11-12, 2011.
12. M. Frimmer, T. Coenen, A.F. Koenderink, Signature of a Fano-resonance in a plasmonic molecule’s local density of optical states (poster), NNV-AMO 2011, Lunteren, the Netherlands, October 11-12, 2011.
13. A.F. Koenderink, How to control single photons and single molecules with nanoscale antennas (talk), Institute of Physics, University of Amsterdam, Amsterdam, the Netherlands, October 20, 2011.
14. F. Bernal Arango, A.F. Koenderink, Scattering of Guided Waveguide Modes by Single Plasmonic Structures (poster), MicroNano Conference, Ede, the Netherlands, November 15-16, 2011.
15. I. Sersic, A.F. Koenderink, Probing radiation patterns of single plasmonic and metamaterial structures (poster), MicroNano Conference, Ede, the Netherlands, November 15-16, 2011.
16. L. Langguth, A.F. Koenderink, Programmable plasmonic structures for efficient Fluoresence Correlation Spectroscopy (poster), MicroNano Conference, Ede, the Netherlands, November 15-16, 2011. c. Awards and recognitions
1. A.F. Koenderink, Elected member of ‘De Jonge Akademie’, the Young Academy of the Royal Dutch Academy of Sciences. d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. A.F. Koenderink, Co-guest editor, Special issue on Optical Antennas to appear in Int. J. Optics.
Femius Koenderink
2. A.F. Koenderink, Jurylid, Beoordelingscommissie NWO–Mozaiek.
3. A.F. Koenderink, Board Member, Atomic, Molecular and Optical Physics (AMO), Dutch Physical Society (NNV). Co-organizer of 35th annual NNV-AMO Meeting, Lunteren, the Netherlands, October 11-12 (2011).
4. A.F. Koenderink, Member, Program committee, Physics@FOM 2012.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects
1. Dr. J. Hoogenboom, DELMIC BV, Delft.
2. D. Couwenberg, ScienceWise/John Wiley & Sons publishing.
3. Y. Ermers, Elsevier publishing.
4. Partnerships in NanoNextNL programs 6B and 6D (Philips Research, ASML, LioniX, Xio Photonics, PhoeniX). c. Performances on television, radio or at public events
1. A.F. Koenderink, Radio interview ‘Hoe?Zo Radio’, NTR, Radio 5, December 12, 2011. d. Publications in public magazines, newspapers or on the internet
1. Antenne voor licht is de kleinste ooit, NRC Handelsblad, August 11, 2011.
2. Antenne voor zichtbaar licht, Technisch Weekblad, August, 2011.
3. Laser lagrer informationer i atomer, Jyllands-Posten, Danish national newspaper, November 3, 2011.
4. Fysikere skyder genvej til kvantecomputeren, Vitenskap.dk, Danish e-zine on science, November 3, 2011. e. Other professional products (software, prototypes, etc.)
Outreach
1. A.F. Koenderink, 2 hour lecture, Negative refraction and magnetism in optics, in BSc course `Condensed Matter Physics’, Utrecht University, November 30, 2011.
Femius Koenderink
2. A.F. Koenderink, Consult Kennislink redactie over `Cloaking in Time’, (Barry van der Meer, Kennislink nanotechnologie redacteur, Juni 2011).
3. A.F. Koenderink, Consult BNN TV redactie van het TV Programma `Proefkonijnen’ over item `Onzichtbaarheidsdeken’ (Kathelijn Vos, BNN redacteur, Sep 2011).
4. A.F. Koenderink, Co-founder ‘Atelier van licht’ initiative.
Huib Bakker
Group H.J. Bakker 2011
Funding FOM-Program Proton mobility in confinement (PMC) FOM-Project Hydrophobes (PRH) FOM-IPP Program Spectroscopic analysis of particles in water (IPPW) FOM-IPP Program Understanding the visco-elasticity of elastomer-based nanocomposites Water interacting with metals (MCWM) Water interacting with proteins (NWO ECHO) Anti-freeze proteins (CWA) Molecular Thermometer (CWT) NanoNextNL Program 5B Molecular Structure of Food (NN5B)
Employees Ellen Backus (PD) CWT Wouter Ensing (stagiair) PMC Nuria Garcia (OIO) MCWM Johannes Hunger (PD) PMC Liyuan Liu (OIO) PMC Stephan Lotze (OIO) CWA Niklas Ottosson (PD) PMC Marcin Pastorczak (PD) CWE Lukasz Piatkowski (OIO) PMC Sietse van der Post (OIO) PRH Yves Rezus (PD) Missie Stefan Scheidelaar (stagiair) PRH Simona Strazdaite (OIO) IPPW
1. Academic publications a. Peer reviewed Publications
1. N. Garcia-Araez, P. Rodriguez, V. Navarro, H.J. Bakker, M.T.M. Koper, Structural effects on water adsorption on gold electrodes, J. Phys. Chem. C 115, 21249-21257 (2011).
2. K.-J. Tielrooij, S.T. van der Post, J. Hunger, M. Bonn, H.J. Bakker, Anisotropic water reorientation around ions, J. Phys. Chem. B 115, 12638-12647 (2011).
3. J. Hunger, I. Cerjak, H. Schoenmaker, M. Bonn, H.J. Bakker, Precision waveguide system for measurement of complex permittivity of liquids at frequencies from 60 to 90 GHz, Rev. Sci. Instr. 82, 104703 (2011).
Huib Bakker
4. Z. Zhang, L. Piatkowski, H.J. Bakker, M. Bonn, Ultrafast vibrational energy transfer at the water/air interface revealed by two-dimensional surface vibrational spectroscopy, Nat. Chem. 3, 888–893 (2011).
5. J. Hunger, L. Liu, K.-J. Tielrooij, M. Bonn, H.J. Bakker, Vibrational and orientational dynamics of water in aqueous hydroxide solutions, J. Chem. Phys. 135, 124517 1-11 (2011).
6. Z. Zhang, L. Piatkowski, H.J. Bakker, M. Bonn, Communication: Interfacial water structure revealed by ultrafast two-dimensional surface vibrational spectroscopy, J. Chem. Phys. 135, 021101 1-3 (2011).
7. A.A. Bakulin, M.S. Pshenichnikov, H.J. Bakker, C. Petersen, Hydrophobic molecules slow down the hydrogen-bond dynamics of water, J. Phys. Chem. A 115, 1821-1829 (2011).
8. L. Piatkowski, H.J. Bakker, Vibrational dynamics of the bending mode of water interacting with ions, J. Chem. Phys. 135, 214509 (2011).
9. L. Liu, J. Hunger, H.J. Bakker, Energy Relaxation Dynamics of the Hydration Complex of Hydroxide, J. Chem. Phys. 115, 14593-14598 (2011). b. Publications in proceedings or other journals
1. H.J. Bakker, Ultrasnelle partnerruil onder water, Nederlands Tijdschrift van Natuurkunde 77, 238-242 (2011).
2. K.-J. Tielrooij, Het effect van ionen op waterdynamica: één plus één is geen twee!, Nederlands Tijdschrift van Natuurkunde 77, 60-63 (2011). c. Contributions to scientific books (chapters or entire book ) d. PhD theses e. Open Access publications
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. H.J. Bakker, Structure and dynamics of ion hydration, International Workshop on Water, Berlin, Germany, April 4-5, 2011.
2. H.J. Bakker, Ultrafast energy transfer at water interfaces studied with two-dimensional vibrational spectroscopy, International CECAM Workshop ‘Vibrational Spectroscopy of Complex Systems’, Paris, France, May 23-25, 2011.
Huib Bakker
3. H.J. Bakker, Femtosecond vibrational study of water dynamics in salt solutions, International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
4. H.J. Bakker, Proton and energy transfer in water and ice, International Telluride Workshop ‘Vibrational dynamics: IR and far-IR spectroscopy’, Telluride, USA, July 25-29, 2011.
5. H.J. Bakker, Ultrafast dynamics of water near ions and hydrophobes, 29th Meeting of the European and Japanese Molecular Liquid Group ‘New outlook on molecular liquids: from short scale to long scale dynamics’, Warsaw, Poland, September 11-15, 2011.
6. H.J. Bakker, Effect of protons and other ions on the dynamics of water, International Workshop ‘Perspectives in Terahertz spectroscopy with neutrons’, Berlin, Germany, November 29-30, 2011.
7. H.J. Bakker, Water interfaces studied with two-dimensional surface vibrational spectroscopy, International conference ‘Ultrafast Chemical Physics’, Glasgow, UK, December 14-16, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. S.T. van der Post, Cooperativity in Ion Hydration (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. E.H.G. Backus, J.M. Kuiper, J.B.F.N. Engberts, B. Poolman, M. Bonn, Reversible optical control of monolayers on water through photoswitchable lipids (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. L. Piatkokwski, Vibrational relaxation pathways of AI and AII modes in N-methylacetamide clusters (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. N. Garcia-Araez, Sum-frequency generation spectroscopy of the electrified gold-liquid water interface (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
5. S.T. van der Post, Probing hydrophobic hydration with ultrafast techniques (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
6. H.J. Bakker, Ions in water: two is a crowd! (talk), FYSICA 2011, Amsterdam, the Netherlands, April 15, 2011.
Huib Bakker
7. M.S. Pshenichnikov, A.A. Bakulin, C. Petersen, H.J. Bakker, 2D IR Spectroscopy of Water Dynamics near Hydrophobes (talk), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
8. E.H.G. Backus, J.M. Kuiper, J.B.F.N. Engberts, B. Poolman, M. Bonn, H.J. Bakker, Ultrafast vibrational probing of heat transport through model membrane systems (poster), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
9. S.T. van der Post, The Effect of Cations on the Anionic Hydration Shell (poster), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
10. J. Hunger, K.-J. Tielrooij, M. Bonn, H. J. Bakker, Effect of Protons and Hydroxide Ions on the Dynamics of Water (poster), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
11. V.G. Pavelyev, A.A. Bakulin, C. Petersen, H.J. Bakker, P.H.M. van Loosdrecht, M.S. Pshenichnikov, Aggregation of Amphiphilic Molecules in Aqueous Solutions (poster), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
12. L. Piatkowski, A.D. Wexler, E.C. Fuchs, H. Schoenmaker, H.J. Bakker, Ultrafast vibrational energy relaxation of the water bridge (poster), International Conference ‘Time- resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011. c. Awards and recognitions
1. S.T. van der Post, Poster prize for The Effect of Cations on the Anionic Hydration Shell, International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
2. K.-J. Tielrooi, FOM Proefschriftprijs 2011. d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. H.J. Bakker, Member, FOM Committee Condensed Matter and Optical Physics.
2. H.J. Bakker, Member, Programme Advisory Board of the FOM Institute "Rijnhuizen".
3. H.J. Bakker, Member, Advisory Editorial Board of Chemical Physics Letters.
4. H.J. Bakker, Member, Advisory Editorial Board of Chemical Physics.
Huib Bakker
5. H.J. Bakker, Member, Editorial Advisory Board of ChemPhysChem.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects
1. NanoNext project with Unilever ‘Effect of co-solutes on biopolymer structural dynamics’.
2. NanoNext project with Danone ‘Effect of co-solutes on biopolymer structural dynamics’.
3. Industrial Partnership Program met Wetsus ‘Spectroscopic analysis of Particles in Water’.
4. Industrial Partnership Program met Michelin, SKF en DPI ‘Understanding the visco- elasticity of elastomer-based nanocomposites’. c. Performances on television, radio or at public events
1. Interview with the Austrian radio Ö1 Dimensionen ('Gesprächsstoffe 4: Mysterium H2O' ), June 26, 2011.
2. Interview with Radio 1 with Sven Kockelmann about research on the water bridge, November 2, 2011. d. Publications in public magazines, newspapers or on the internet
1. Magische waterbrug bevat raar water, De Volkskrant, November 2, 2011.
2. Bijzonder water in een zwevende waterbrug, Het Friesch Dagblad, November 5, 2011.
3. Door ‘tussenijs’bevriest water soms pas bij min 48 graden, De Volkskrant, November 9, 2011. e. Other professional products (software, prototypes, etc.) Huib Bakker
Outreach
1. H.J. Bakker, Photovoltaics, 8 lecture hours in master course Advanced Materials and Energy Physics (AMEP), University of Amsterdam, 2010/2011.
2. H.J. Bakker, Jurylid op het “Techniek toernooi” voor basisscholen, Alkmaar, March 24, 2011.
3. H.J. Bakker, Lecture on gravity for ‘Plusklas’ (=selection of talented children of groups 7 and 8). Mischa Bonn
Group M. Bonn 2011
Funding FOM-Program Nanophotovoltaics (NPV) FOM-Program Young Energy Scientists (YES) FOM-Program Proton Mobility in Confinement (PMC) FOM-Projectruimte Polyphenols (PP) FOM-Projectruimte Water Surface Puzzle (PW) NWO-VICI (VICI) NWO-CW-ECHO (ECHO) NanoNextNL Program 5B Molecular Structure of Food (NN5B) Hot carrier solar cells (Toyota) Nanobio Interfacing (Unilever) MPIP-Scientific collaboration (MPIP) DFG-German Science Foundation (DFG) EU-Marie Curie-Air min wat (SFG)
Employees Nils Billecke (PD) NN5B Enrique Canovas (PD) Toyota Cramer Campen SFG Katrin Domke (PD) MPIP Leonie Driessen (lab. assistant) MPIP Maarten Engel (PD) PP Cho-Shuen Hsieh (OIO) PW Johannes Hunger (PD) DFG Soren Jensen (OIO) NPV Sen Liang (gast) MPIP Gjenna Oshovsky (PD) PP Ruben Pool (OIO) ECHO Joep Pijpers (PD) YES Gianluca Rago (OIO) MPIP Maarten Soudijn (stagiair) - Yujin Tong (PD) PMC Ronald Ulbricht MPIP Jan Versluis PR Victor Volkov (PD) MPIP Zhen Zhang (PD) VICI, MPIP
1. Academic publications Mischa Bonn a. Peer reviewed Publications
1. K.F. Domke, T.A. Riemer, G. Rago, A.N. Parvulescu, P.C.A. Bruijnincx, A. Enejder, B.M. Weckhuysen, M. Bonn, Tracing catalytic conversion on single zeolite crystals in 3D with nonlinear spectromicroscopy, J. Am. Chem. Soc. ASAP article, DOI: 10.1021/ja2088025 (2011).
2. K.F. Domke, J.P.R. Day, G. Rago, T.A. Riemer, M.H.F. Kox, B.M. Weckhuysen, M. Bonn, Host-guest geometry in pores of zeolite ZSM-5 spatially resolved with multiplex CARS spectromicroscopy, Angew. Chem., Int. Ed. 50 (published online), DOI: 10.1002/anie.201106447 (2011).
3. R.E. Pool, J. Versluis, E.H.G. Backus, M. Bonn, Comparative study of direct and phase- specific vibrational sum-frequency generation spectroscopy: advantages and limitations, J. Phys. Chem. B 115, 15362–15369 (2011).
4. S.Y. Reece, J.A. Hamel, K. Sung, T.D. Jarvi, A.J. Esswein, J.J.H. Pijpers, D.G. Nocera, Wireless solar water splitting using silicon-based semiconductors and earth-abundant catalysts, Science 334, 645-648 (2011).
5. K.-J. Tielrooij, S.T. van der Post, J. Hunger, M. Bonn, H.J. Bakker, Anisotropic water reorientation around ions, J. Phys. Chem. B 115, 12638-12647 (2011).
6. E. Cánovas, P. Moll, S.A. Jensen, Y. Gao, A.J. Houtepen, L.D.A. Siebbeles, S. Kinge, M. Bonn, Size-dependent electron transfer from PbSe quantum dots to SnO2 monitored by picosecond Terahertz Spectroscopy, Nano Lett. 11, 5234–5239 (2011).
7. J. Hunger, I. Cerjak, H. Schoenmaker, M. Bonn, H.J. Bakker, Precision waveguide system for measurement of complex permittivity of liquids at frequencies from 60 to 90 GHz, Rev. Sci. Instr. 82, 104703 (2011).
8. S. Nihonyanagi, T. Ishiyama, T. Lee, S. Yamaguchi, M. Bonn, A. Morita, T. Tahara,
Unified molecular view of the air/water interface based on experimental and theoretical X(2) spectra of an isotopically diluted water surface, J. Am. Chem. Soc. 133, 16875-16880 (2011).
9. C.C. van den Akker, M.F.M. Engel, K.P. Velikov, M. Bonn, G.H. Koenderink, Morphology and bending rigidity of amyloid fibrils are correlated to peptide molecular structure, J. Am. Chem. Soc. 133, 18030–18033 (2011).
10. R. Ulbricht, S.T. van der Post, J.P. Goss, P.R. Briddon, R.R. Jones, R.U.A. Khan, M. Bonn, Single substitutional nitrogen defects revealed as electron acceptor states in diamond using ultrafast spectroscopy, Phys. Rev. B 84, 165202 1-9 (2011).
11. Z. Zhang, L. Piatkowski, H.J. Bakker, M. Bonn, Ultrafast vibrational energy transfer at the water/air interface revealed by two-dimensional surface vibrational spectroscopy, Nat. Chem. 3, 888–893 (2011).
Mischa Bonn
12. J. Hunger, L. Liu, K.-J. Tielrooij, M. Bonn, H.J. Bakker, Vibrational and orientational dynamics of water in aqueous hydroxide solutions, J. Chem. Phys. 135, 124517 1-11 (2011).
13. C.-S. Hsieh, R.K. Campen, A.C. Vila Verde, P.G. Bolhuis, H.-K. Nienhuys, M. Bonn, Ultrafast reorientation of dangling OH groups at the air-water interface using femtosecond vibrational spectroscopy, Phys. Rev. Lett. 107, 116102 1-5 (2011).
14. G. Rago, C.M. Langer, C. Brackman, J.P.R. Day, K.F. Domke, N. Raschzok, C. Schmidt, I.M. Sauer, A. Enejder, M.T. Mogl, M. Bonn, CARS microscopy for the visualization of micrometer-sized iron oxide MRI contrast agents in living cells, Biomed. Opt. Express 2, 2470-2483 (2011).
15. Z. Zhang, L. Piatkowski, H.J. Bakker, M. Bonn, Communication: Interfacial water structure revealed by ultrafast two-dimensional surface vibrational spectroscopy, J. Chem. Phys. 135, 021101 1-3 (2011).
16. J.P.R. Day, K.F. Domke, G. Rago, H. Kano, H. Hamaguchi, E.M. Vartiainen, M. Bonn, Quantitiative Coherent Anti-stokes Raman Scattering (CARS) microscopy, J. Phys. Chem. B 115, 7713–7725 (2011).
17. J.J.H. Pijpers, M.T. Winkler, Y. Surendranath, T. Buonassisi, D.G. Nocera, Light- induced water oxidation at silicon electrodes functionalized with a cobalt oxygen-evolving catalyst, PNAS 108, 10056-10061 (2011).
18. R. Ulbricht, E. Hendry, J. Shan, T.F. Heinz, M. Bonn, Carrier dynamics in semiconductors studied with time-resolved Terahertz spectroscopy, Rev. Mod. Phys. 83, 543–586 (2011).
19. A.C. Vila Verde, R.K. Campen, Disaccharide topology induces slowdown in local water dynamics, J. Phys. Chem. B 115, 7069–7084 (2011).
20. G. Rago, B. Bauer, F. Svedberg, L. Gunnarsson, M.B. Ericson, M. Bonn, A. Enejder, Uptake of gold nanoparticles in healthy and tumor cells visualized by nonlinear optical microscopy, J. Phys. Chem. B 115, 5008-5016 (2011).
21. E.H.G. Backus, J.M. Kuiper, J.B.F.N. Engberts, B. Poolman, M. Bonn, Reversible optical control of monolayers on water through photoswitchable lipids, J. Phys. Chem. B 115, 2294- 2302 (2011).
22. M.T. Trinh, L. Polak, J.M. Schins, A.J. Houtepen, R. Vaxenburg, G.I. Maikov, G. Grinbom, A.G. Midgett, J.M. Luther, M.C. Beard, A.J. Nozik, M. Bonn, E. Lifshitz, L.D.A. Siebbeles, Anomalous independence of multiple exciton generation on different group IV-VI quantum dot architectures, Nano Lett. 11, 1623–1629 (2011).
23. J.J.H. Pijpers, R. Ulbricht, S. Derossi, J.N.H. Reek, M. Bonn, Picosecond electron injection dynamics in dye-sensitized oxides in the presence of electrolyte, J. Phys. Chem. C 115, 2578- 2584 (2011). b. Publications in proceedings or other journals Mischa Bonn c. Contributions to scientific books (chapters or entire book )
1. Book title: “Dynamics of interfacial electron and excitation transfer in solar energy conversion: theory and experiment”. Editor P. Piotrowiack, RSC Publishing group. “Chapter 11: Carrier dynamics in photovoltaic structures and materials studied with time-resolved terahertz spectroscopy” Authors: Enrique Canovas, Joep Pijpers, Ronald Ulbricht and Mischa Bonn. To be published. d. PhD theses e. Open Access publications
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. M. Bonn, Carrier Multiplication in Bulk Materials and Quantum Dots: Relevance for Solar Cells, Physics and Chemistry of Surfaces and Interfaces (PCSI-38), San Diego, USA, January 16- 20, 2011.
2. M. Bonn, THz studies of Water around Protons and Ions, Optical Terahertz Science and Technology Conference, Santa Barbara, USA, March 13-17, 2011.
3. L. Piatkowski, M. Bonn, Ultrafast dynamics of surface water, Elementary Processes in Solids and at Interfaces, Bad Staffelstein, Germany, May 29-June 1, 2011.
4. M. Bonn, 2D-surface sensitive spectroscopy reveals structure and dynamics of interfacial Water, CECAM Meeting ‘Liquid/Solid Interfaces’, Lausanne, Switzerland, June 27-29, 2011.
5. M. Bonn, Structure and Dynamics of Interfacial Water - 2D-surface sensitive spectroscopy, Femtochemistry X, Madrid, Spain, July 10-15, 2011.
6. M. Bonn, Label-free studies of biomolecular interactions at model membranes and lipid metabolism, 14th European Conference on the Spectroscopy of Biological Molecules, Coimbra, Portugal, August 29-September 3, 2011.
7. J. Day, M. Bonn, A new Raman tool to study art and archaeology?, 6th International Congress on the Application of Raman Spectroscopy in Art and Archaeology, Parma, Italy, September 5-8, 2011.
8. M. Bonn, Structure and dynamics of interfacial water, 9th International Conference ‘Optics of Surfaces and Interfaces’ (OSI-9), Akumal, Mexico, September 19-23, 2011. Mischa Bonn
b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. Z. Zhang, L. Piatkowski, H.J. Bakker, M. Bonn, Quantifying the heterogeneity of the water interface (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. E. Cánovas, P. Moll, C. de Mello Donegá, M. Bonn, Nano-engineering towards the realization of hot carrier solar cells (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. S. Bohme, S. Jensen, K.-J. Tielrooij, E. Canovas, R. Ulbricht, M. Bonn, Electron pathways in colloidal metal oxide films (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. P. Moll, E. Canovas, Y. Gao, A.J. Houtepen, M. Bonn, The influence of QD size on electron injection dynamics in PbSe QDs sensitizing SnO2 mesoporous oxides (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
5. M. Bonn, Ultrafast 2-dimensional surface vibrational spectroscopy of water interfaces (talk), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
6. J. Hunger, L. Liu, K.-J. Tielrooij, M. Bonn, H. J. Bakker, Effect of Protons and Hydroxide Ions on the Dynamics of Water (poster), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
7. Z. Zhang, L. Piatkowski , H.J. Bakker, M. Bonn, Ultrafast 2-Dimensional Surface Vibrational Spectroscopy of Water at Lipid Interface (poster), International Conference ‘Time-resolved Vibrational Spectroscopy XV’, Ascona, Switzerland, June 19-24, 2011.
8. Z. Zhang, L. Piatkowski , H.J. Bakker, M. Bonn, Ultrafast 2-Dimensional Surface Vibrational Spectroscopy of Water at Lipid Interface (poster), Femtochemistry X, Madrid, Spain, July 10-15, 2011.
9. E. Cánovas, P. Moll, Y. Gao, A.J. Houtepen, S. Kinge, M. Bonn, Unambiguous characterization of electron transfer rates in quantum dot sensitizing oxides by Terahertz time domain spectroscopy, 2nd int. conf. on semiconductor sensitized solar cells (poster), Mallorca, Spain, September 18-20, 2011.
Mischa Bonn
10. Z. Zhang, C. Hsieh, L. Piatkowski , H.J. Bakker, M. Bonn, Ultrafast vibrational energy transfer at the water-air interface: two-dimensional surface vibrational spectroscopy (poster), International Workshop on Ultrafast Chemical Physics, Glasgow, UK, December 14- 16, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet e. Other professional products (software, prototypes, etc.)
1. Quantum dot solar cell demonstrator.
Outreach
1. Masterclass ‘How to get funded’, Young Scientist Day, FOM, Amsterdam, December 3, 2011.
2. Photovoltaics, 3 lectures in master course Advanced Materials and Energy Physics (AMEP), University of Amsterdam (2010, 2011).
Ron Heeren
Group R.M.A. Heeren 2011
Funding FOM-NKI Pilot Project TNBC Imaging Studies (NKI) BSIK-Project Netherlands Proteomics Centre (NPC) BSIK-Project COMMIT (COMMIT) Bilaterale samenwerking (J&J) NIH-R01 Project Tumor Microenvironment (NIH) STW-Program Medipix (STW) Medikrans Janssen Pharma (Janssen)
Employees Erika Amstalden (OIO) Janssen Kamila Chugtai (OIO) NIH Sana Chughtai (junior onderzoeker) NKI Berta Cillero Pastor (gast) - Lara Fornai (gast) - Julia Jungmann (OIO) STW Andriy Kharchenko (gast) COMMIT Andras Kiss (OIO) NPC Piet Kistemaker (gast) - Nadine Mascini (OIO) COMMIT Don Smith (PD) COMMIT
1. Academic publications a. Peer reviewed Publications
1. G.N. Vladimirov, C.L. Hendrickson, G.T. Blakney, A.G. Marshall, R.M.A. Heeren, E.N. Nikolaev, Fourier transform ion cyclotron resonance mass resolution and dynamic range limits calculated by computer modeling of ion cloud motion, J. Am. Soc. Mass Spectrom. Online first, 10.1007/s13361-011-0268-8 (2011).
2. W. Bult, H. de Leeuw, O.M. Steinebach, H.T. Wolterbeek, R.M.A. Heeren, A.D. van het Schip, W.E. Hennink, J.F.W. Nijsen, Radioactive holmium acetylacetonate microspheres for interstitial microbrachytherapy: an in vitro and in vivo stability study, Pharm. Res. published online, 10.1007/s11095-011-0610-7 (2011).
3. D.F. Smith, E.W. Robinson, A.V. Tolmachev, R.M.A. Heeren, L. Pasa-Tolic, C60 Secondary Ion Fourier Transform Ion Cyclotron Resonance Mass Spectrometry, Anal. Chem. 83, 9552–9556 (2011).
4. J. Cox, R.M.A. Heeren, P. James, J.V. Jorrin-Novo, E. Kolker, F. Levander, N. Morrice, P. Picotti, P.G. Righetti, J.- C. Sánchez, C.W. Turck, R. Zubarev, B.M. Alexandre, F.J. Corrales, G. Marko-Varga, S. O'Donovan, S. O'Neil, J. Prechl, T. Simões, W. Weckwerth, D. Penque, Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010, J. Proteomics 75, 4-17 (2011).
Ron Heeren
5. F.N. Svara, A. Kiss, T. Jaskolla, M. Karas, R.M.A. Heeren, High-reactivity matrices increase the sensitivity of matrix enhanced secondary Ion Mass Spectrometry, Anal. Chem. 83, 8308-8313 (2011).
6. J.H. Jungmann, L. MacAleese, J. Visser, M.J.J. Vrakking, R.M.A. Heeren, High dynamic range bio-molecular ion microscopy with the Timepix Detector, Anal. Chem. 83, 7888-7894 (2011).
7. A. Nasioudis, J.W. van Velde, R.M.A. Heeren, O.F. van den Brink, Detailed molecular characterization of castor oil ethoxylates by liquid chromatography multistage mass spectrometry, J. Chrom. A 1218, 7166-7172 (2011).
8. G.N. Vladimirov, A.V. Kharchenko, R.M.A. Heeren, E.N. Nikolaev, Simulation of ion dynamics in the orbital ion trap with regard to the space-charge and trapping electric field inharmonicity, Trans. MIPT 3, 157-162 in Russian (2011).
9. E.R. Amstalden van Hove, D.F. Smith, L. Fornai, K. Glunde, R.M.A. Heeren, An alternative paper based tissue washing method for Mass Spectrometry Imaging: Localized washing and fragile tissue analysis, J. Am. Soc. Mass Spectrom. 22, 1885-1890 (2011).
10. L.L.A. Spijkers, R.F.P. van den Akker, B.J.A. Janssen, J.J. Debets, J.G.R. de Mey, E.S.G. Stroes, B.-J.H. van den Born, D.S. Wijesinghe, C.E. Chalfant, L. MacAleese, G.B. Eijkel, R.M.A. Heeren, A.E. Alewijnse, S.L.M. Peters, Hypertension is associated with marked alterations in sphingolipid biology: a potential role for ceramide, PloS ONE 6, e21817 1-9 (2011).
11. L. MacAleese, M.C. Duursma, L.A. Klerk, G. Fisher, R.M.A. Heeren, Protein identification with Liquid Chromatography and Matrix Enhanced Secondaty Ion Mass Spectrometry (LC-ME-SIMS), J. Proteomics 74, 993-1001 (2011).
12. K. Aizikov, D.F. Smith, D.A. Chargin, S. Ivanov, T-Y. Lin, R.M.A. Heeren, P.B. O'Connor, Vacuum compatible sample positioning device for matrix assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry imaging, Rev. Sci. Instr. 82, 054102 1-8 (2011).
13. A. Nasioudis, J.W. van Velde, R.M.A. Heeren, O.F. van den Brink, Electrospray ionization mass spectrometry of the non-covalent complexes of ammonium ions with high molar mass polyethers, Int. J. Mass Spect. 303, 63-68 (2011).
14. A. Nasioudis, R.M.A. Heeren, I. van Doormalen, N. de Wijs-Rot, O.F. van den Brink, Electrospray ionization tandem mass spectrometry of ammonium cationized polyethers, J. Am. Soc. Mass Spectrom. 22, 837-844 (2011).
15. J. Song, J.W. van Velde, L.L.T. Vertommen, D.F. Smith, R.M.A. Heeren, O.F. van den Brink, End-group analysis of methacrylic (co)polymers by LC-ESI-MS2, Macromolecules 44, 1319-1326 (2011).
16. A. Kiss, R.M.A. Heeren, Size, weight and position: ion mobility spectrometry and imaging MS combined, Anal. Bioanal. Chem. 399, 2623-2634 (2011).
Ron Heeren
17. D.F. Smith, K. Aizikov, M.C. Duursma, F.G. Giskes, D.-J. Spaanderman, L.A. McDonnell, P.B. O'Connor, R.M.A. Heeren, An external matrix-assisted laser desorption ionization source for flexible FT-ICR mass spectrometry imaging with internal calibration on adjacent samples, J. Am. Soc. Mass Spectrom. 22, 130-137 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses
1. J. Song, Multimodal separation and multistage mass spectrometry of synthetic polymers, Utrecht University, January 19, 2011.
2. L. Fornai, Molecular imaging of the heart by Mass Spectrometry, University of Padova, January 31, 2011.
3. A. Nasioudis, Energy and charge control in Mass Spectrometry of synthetic polymers, Utrecht University, June 23, 2011.
4. E.R. Amstalden van Hove, New methods for multimodal MS imaging of histological tissue sections, Utrecht University, November 21, 2011. e. Open Access publications
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. R.M.A. Heeren, Molecular imaging 2.0, PNNL-EMSL, Richland, USA, January 5, 2011.
2. R.M.A. Heeren, Integrative Imaging mass spectrometry in biomolecular surface analysis, Pacific Northwest Mass Spectrometry Symposium, Dendreon, USA, January 10, 2011.
3. R.M.A. Heeren, Biomolecular imaging mass spectrometry: Tissues and molecular microscopy, SCM-5: Fifth International Symposium on the Separation and Characterization of Natural and Synthetic Macromolecules, Amsterdam, the Netherlands, January 26-28, 2011.
4. R.M.A. Heeren, Label free biomolecular imaging in clinical research with mass spectrometry based microscopy, University of Bern, Bern, Switzerland, February 7, 2011.
5. R.M.A. Heeren, Beyond Electrospray ionization ETD/ECD: “Electron Transfer Reactions in Imaging MS", 8th UPPCON on Electron Transfer Reactions, Villars-sur-Ollon, Switzerland, February 10, 2011.
Ron Heeren
6. R.M.A. Heeren, B. Cillero Pastor, K. Chughtai, A. Kiss, G. Eijkel, Ion Mobility and Molecular Histology: New Glasses for the Doctor, Waters 6th International Symposium, Manchester, UK, April 12-14, 2011.
7. R.M.A. Heeren, D.F. Smith, K. Chughtai, K. Glunde, B. Cillero Pastor, R. Robinson, L. Pasa-Tolic, Unraveling Molecular Complexity at Biological Surfaces with FTICR-MS Imaging, 8th North American FTMS Conference, Key West, USA, May 1-5, 2011.
8. R.M.A. Heeren, Seeing molecular signals with imaging mass spectrometry, ICMIC lecture, Johns Hopkins University, Baltimore, USA, June 3, 2011.
9. R.M.A. Heeren, Visualizing complex molecular signals with multimodal imaging mass spectrometry, 11th International ELMI Meeting, Alexandropoulos, Greece, June 7-10, 2011.
10. R.M.A. Heeren, Imaging Mass Spectrometry for proteome studies on biological surfaces, HUPO 2011, Geneva, Switzerland, September 4-7, 2011.
11. R.M.A. Heeren, Signaling on biological surfaces: high resolution imaging mass spectrometry, ECASIA ’11, Cardiff, UK, September 4-11, 2011.
12. R.M.A. Heeren, Imaging pathways: Looking at molecular signals with multimodal imaging mass spectrometry, BMSS 2011, Cardiff, UK, September 11-14, 2011.
13. R.M.A. Heeren, Imaging molecular pathways with multimodal imaging mass spectrometry, Ardgour Meeting, Ardgour, UK, September 11-17, 2011.
14. R.M.A. Heeren, Integrative Imaging Mass Spectrometry: A Multi-Modal Approach to Reveal Molecular Complexity at Biological Surfaces, Mass Spectrometry for the Medical & Life Sciences: The Emerging Role of Ion Mobility Mass Spectrometry, Royal Society of Edinburgh, Edinburgh, UK, September 27, 2011.
15. R.M.A. Heeren, Imaging molecular signals on tissue with multi-modal imaging mass spectrometry, DOE-BER review, EMSL-PNNL, Richland, USA, October 19, 2011.
16. R.M.A. Heeren, Integrative Imaging Mass Spectrometry: science across disciplines, MS@Manchester Symposium, University of Manchester, Manchester, UK, December 8, 2011.
17. R.M.A. Heeren, High performance multimodal MS based molecular imaging in biomedicine, Mass spectrometry and bio-imaging forum, Skolkovo, Moscow, Russia, December 11- 13, 2011.
Ron Heeren
18. R.M.A. Heeren, Multimodal imaging MS for clinical research: from fundamental to applied research, 3rd Proteored Scientific meeting about clinical proteomics, Barcelona, Spain, December 15-16, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. K. Chughtai, Mass Spectrometry Images Breast Cancer (talk), NPC Progress Meeting, Utrecht, the Netherlands, January 13, 2011.
2. A. Kiss, A. Carrano, D.F. Smith, S.M. van der Vies, R.M.A. Heeren, Mass spectrometry imaging of brain tissue from patients with Alzheimer’s disease (poster), NPC Progress Meeting, Utrecht, the Netherlands, January 13, 2011.
3. J.H. Jungmann, A new imaging method for understanding chemical dynamics: Efficient slice imaging using an in-vacuum pixel detector (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. J.H. Jungmann, A new molecular imaging approach: Space- and time-resolved imaging of bio- molecules using an in-vacuum pixel detector (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
5. R.M.A. Heeren, Signals in tissue: molecular histology with a mass spectrometer (talk), University of Twente, Enschede, the Netherlands, March 7, 2011.
6. B. Cillero Pastor, F. Blanco Garcia, R.M.A. Heeren, Protein Distribution and Identification in Rat and Human Articular Tissues by Imaging Mass Spectrometry (talk), Proteomics Forum 2011, Freie Universität Berlin, Berlin, Germany, April 3-7, 2011.
7. A. Kiss, A. Carrano, D.F. Smith, S.M. van der Vies, R.M.A. Heeren, Mass spectrometry imaging of brain tissue from patients with Alzheimer’s disease, NVMS Spring Meeting, Utrecht University, Utrecht, the Netherlands, April 7, 2011.
8. J.H. Jungmann, Photoelectron & Ion Imaging Using an In-Vacuum Pixel Detector of the Medipix/Timepix Family (talk), INCAS3, Institute for Sensors and Sensor Systems, Assen, the Netherlands, May, 2011.
9. R.M.A. Heeren, B. Cillero Pastor, S. Chughtai, G. Eijkel, D.F. Smith, L. Pasa-Tolic, High resolution imaging mass spectrometry in arthritic diseases (talk), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
10. D.F. Smith, R. Robinson, A.V. Tolmachev, C. Berg, R.M.A. Heeren, L. Pasa-Tolic, High Performance Chemical Imaging: C60 SIMS FT-ICR Mass Spectrometry (talk), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
Ron Heeren
11. K. Czornak, L. Jiang, T.R. Blackwell, K. Glunde, R.M.A. Heeren, Mass Spectrometry Visualizes Hypoxia-driven Processes in Breast Tumors (talk), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
12. A. Nasioudis, J.W. van Velde, R.M.A. Heeren, O.F. van den Brink, ESI-MS and MS/MS of low charge state adduct ions of high molar mass synthetic (co)polymers with ammonium compounds (talk), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
13. F.E. Leach III, A. Kharchenko, G.N. Vladimirov, K. Aizikov, P.B. O’Connor, E. Nikolaev, R.M.A. Heeren, I.J. Amster, Evaluation Of Frequency Shifts In Particle-In- Cell Ion Trajectory Simulations Of Harmonized FT-ICR MS Analyzer Cells (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
14. J. Song, C.H. Grün, R.M.A. Heeren, H.G. Janssen, O.F. van den Brink, Poly(methyl methacrylate) characterization by High-resolution Ion Mobility Spectrometry-Mass Spectrometry (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
15. A. Kiss, A. Carrano, D.F. Smith, S.M. van der Vies, R.M.A. Heeren, Mass spectrometry imaging of brain tissue from patients with Alzheimer’s disease (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
16. B. Cillero Pastor, F. Blanco Garcia, R.M.A. Heeren, Localization and identification of biomarkers in human cartilage by Maldi Imaging Mass Spectrometry (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
17. S. Chughtai, K. Chughtai, A. Kiss, B. Cillero Pastor, L. MacAleese, R.M.A. Heeren, Imaging Rheumatoid Arthritis: novel MS investigation of an old disease (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
18. A. Kharchenko, G. Vladimirov, R.M.A. Heeren, E. Nikolaev, Performance of Orbitrap mass analyzer at various space charge and non-ideal field conditions (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
19. D.A. Pirman, A. Kiss, R.M.A. Heeren, R.A. Yost, Quantitative MALDI Tandem Mass Spectrometric Imaging of Cocaine from Brain Tissue with a Deuterated Internal Standard (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
Ron Heeren
20. K.A. Lunsford, A. Kiss, R.M.A. Heeren, G.F. Peter, R.A. Yost, Matrix-Assisted Laser Desorption/Ionization Mass Spectrometric Imaging of Lignocellulosic Tissue (poster), 59th Annual Conference on Mass Spectrometry and Allied Topics, Denver, USA, June 5–9, 2011.
21. R.M.A. Heeren, Molecular imaging with mass spectrometry: A primer (talk), 5th Summerschool on Mass Spectrometry in Biotechnology and Medicine, Dubrovnik, Croatia, July 3-11, 2011.
22. R.M.A. Heeren, Visualizing molecular signals with a mass spectrometer: Mass spectrometric imaging studies on biomolecular surfaces (talk), 5th Summerschool on Mass Spectrometry in Biotechnology and Medicine, Dubrovnik, Croatia, July 3-11, 2011.
23. N.E. Mascini, S. Chughtai, M. Shariatgorji, P.E. Andrén, J. Wesseling, R.M.A. Heeren, Application of Mass Spectrometry Imaging in Molecular Histology (poster), 5th Summerschool on Mass Spectrometry in Biotechnology and Medicine, Dubrovnik, Croatia, July 3-11, 2011.
24. F. Marty, L. MacAlleese, G. Eijkel, A. Kharchenko, K. Basler, E. Brunner, R.M.A. Heeren, Imaging Mass Spectrometry of the Drosophila Melanogaster Wing Imaginal Disc (poster), HUPO 2011, Geneva, Switzerland, September 4-7, 2011.
25. B. Cillero Pastor, F. Blanco-Garcia, R.M.A. Heeren, Identification and different localization of proteins in the superficial and the deep human OA cartilage by imaging mass spectrometry (talk), 2011 World Congress on Osteoarthritis, San Diego, USA, September 15-18, 2011.
26. R.M.A. Heeren, Current position and future direction of MS-based Imaging techniques (talk), The 3rd Waters Summit on the Future of MS Technology in Proteomics Research, Manchester, UK, October 4-5, 2011.
27. B. Cillero Pastor, Imaging Mass Spectrometry: New Perspectives in the Study of Osteoarthritis (poster), The 3rd Waters Summit on the Future of MS Technology in Proteomics Research, Manchester, UK, October 4-5, 2011.
28. R.M.A. Heeren, Molecular signaling in tissue: High resolution imaging MS at work (talk), MS in the Life Sciences, University of Warwick, Coventry, UK, October 14, 2011.
29. J.H. Jungmann, A New Molecular Imaging Approach: Space- and Time- Resolved Imaging of Bio-Molecules Using an in-Vacuum Pixel Detector (talk), IEEE Medical Imaging Conference, Valencia, Spain, October 23-29, 2011.
30. B. Cillero Pastor, Imaging mass spectrometry: new perspectives in the study of rheumatic diseases (talk), Workshop in Tissue Imaging, La Coruna, Spain, November 3-4, 2011.
Ron Heeren
31. R.M.A. Heeren, Pathway Imaging Mass Spectrometry: Multiplexed label-free detection of molecular signals on biological surfaces (talk), NKI-AvL Seminar series, Amsterdam, the Netherlands, November 4, 2011.
32. N.E. Mascini, Project P24 e-BioBanking with Imaging for Healthcare: multimodal molecular histology using imaging mass spectrometry (on stand of the information market) (talk), ICTDelta 2011, Launch COMMIT, Den Haag, the Netherlands, November 16, 2011.
33. J.H. Jungmann, Biomolecular Imaging Mass Spectrometry Using the Timepix Detector (talk), Medipix Collaboration Meeting, Geneva, Switzerland, November 2011.
34. B. Cillero Pastor, Understanding the osteoarthritis: The relevance of studying the distribution of proteins and lipids in the human cartilage (talk), Segunda Reunión Jóvenes Investigadores en el Extranjero, La Coruna, Spain, 2011, December 28, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. R.M.A. Heeren, Member, Editorial board, International Journal for Mass Spectrometry.
2. R.M.A. Heeren, Member, Editorial board, Journal for Biomolecular Mass Spectrometry.
3. R.M.A. Heeren, Member, STW gebruikerscommissie TU/e project: Laser-cooled focused ion beams.
4. R.M.A. Heeren, Member, User Proposal Evaluation Committee, PNNL-EMSL.
5. R.M.A. Heeren, Member, Scientific Advisory Board, Warwick Center for Analytical Sciences.
6. R.M.A. Heeren, Member, DFG jury in the Imaging MS program.
7. R.M.A. Heeren, Dutch National Representative and Member of the Management Committee of the EUCOST action BM1104.
8. R.M.A. Heeren, Member, Scientific Advisory Committee, 1st International Conference on Imaging Mass Spectrometry, Ourense, Spain.
9. R.M.A. Heeren, Member, Scientific Advisory Committee, UPPCON 9, Charleston, USA.
3. Knowledge transfer (societal and economic) Ron Heeren a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects
1. ULVAC-PHI (S. Bryan, H. Iwai): Physical Electronics, 2D delayline detector development.
2. Akzo-Nobel (O.F. van den Brink): FTMS polymer structure analysis.
3. Waters (Hoyes). c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet
1. M. van Veen, Moleculen, bier en volleybal, WeesperNieuws, January 13, 2011. e. Other professional products (software, prototypes, etc.)
1. Datacube Explorer for Imaging MS.
2. Timepix detector prototype.
Outreach Mirjam Leunissen
Group M. Leunissen 2011
Funding FOM/v Program (FOMN) FOM-Projectruimte (PR)
Employees Remko Dijkstra (stagiair) - Bob Hommersom (OIO) - Anouk de Hoogh (stagiair) - Stef van der Meulen (OIO) - Arthur Newton (stagiair) - Freek Ruesink (stagiair) - Alia Schoen (gast) -
1. Academic publications a. Peer reviewed Publications
1. T. Wang, R. Sha, R. Dreyfus, M.E. Leunissen, C. Maass, D.J. Pine, P.M. Chaikin, N.C. Seeman, Self-replication of information-bearing nanoscale patterns, Nature 478, 225–228 (2011).
2. M. Hermes, E.C.M. Vermolen, M.E. Leunissen, D.L.J. Vossen, P.D.J. van Oostrum, M. Dijkstra, A. van Blaaderen, Nucleation of colloidal crystals on configurable seed structures, Soft Matter 7, 4623-4628 (2011).
3. M.E. Leunissen, D. Frenkel, Numerical study of DNA-functionalized micro- and nano- particles: explicit pair potentials and their implications for phase behavior, J. Chem, Phys. 134, 084702 (2011).
4. B.M. Mognetti, M.E. Leunissen, D. Frenkel, Controlling the temperature sensitivity of DNA-mediated colloidal interactions through competing linkages, Soft Matter (2011), DOI: 10.1039/C2SM06635A. b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses e. Open Access publications
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings Mirjam Leunissen b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. M.E. Leunissen, D. Frenkel, Lose & Gain: The entropy game for surfaces interacting through tethered binding groups (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. M.E. Leunissen, Strong control through weak bonds: steering the self-organization of soft systems (talk), Utrechts Natuurkundig Gezelschap, Utrecht, the Netherlands, March 1, 2011.
3. M.E. Leunissen, D. Frenkel, Lose & Gain: the entropy game for surface-tethered binding (poster), 55th Biophysical Society Annual Meeting, Baltimore, USA, March 5-9, 2011.
4. M.E. Leunissen, D. Frenkel, Connecting sticky ends: Numerical study of DNA-mediated colloidal interactions and phase behavior (poster), 1st International Symposium on Colloids & Materials, Amsterdam, the Netherlands, May 8-11, 2011.
5. M.E. Leunissen, D. Frenkel, Connecting sticky ends: Numerical study of DNA-mediated colloidal interactions and phase behavior (poster), Black Forest Focus on Soft Matter: ‘Self-assembly on all scales', Saig/Titisee, Germany, May 24-27, 2011.
6. M.E. Leunissen, Strong control through weak bonds: steering the self-organization of soft systems (talk), Technical University Eindhoven, Eindhoven, the Netherlands, June 9 2011.
7. M.E. Leunissen, D. Frenkel, Connecting sticky ends: Numerical study of DNA-mediated colloidal interactions and phase behavior (poster), 8th Liquid Matter Conference, Wien, Austria, September 6-10, 2011.
8. M.E. Leunissen, Strong control through weak bonds: steering the self-organization of soft systems (talk), CIC biomaGUNE, San Sebastain, Spain, October 20, 2011.
9. M.E. Leunissen, Strong control through weak bonds: steering the self-organization of soft systems (talk), University Twente, Enschede, the Netherlands, December 9, 2011. c. Awards and recognitions
1. M.E. Leunissen, Elected member of ‘De Jonge Akademie’, the Young Academy of the Royal Dutch Academy of Sciences. Mirjam Leunissen d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. M.E. Leunissen, Member, Program committee Physics@FOM 2011.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet e. Other professional products (software, prototypes, etc.)
1. DNA Pair Potentials: Fortran code to calculate the pair interaction potentials of flat surfaces and spheres that are functionalized with DNA; accompanies J. Chem. Phys. 134, 084702 (2011).
Outreach
1. M.E. Leunissen, interview Tube your Future, Sint Michaelcollege, Zaandam, the Netherlands, April, 2011.
2. M.E. Leunissen, de Jonge Akademie on Wheels, OSG Sevenwolden, Grou, the Netherlands, May 13, 2011.
Marileen Dogterom
Group M. Dogterom 2011
Funding FOM-Program Spatial Design of Biochemical Regulation Networks (SPAT) FOM-Program Mechanosensing and Mechanotransduction by Cells (MMC) NWO-VICI (VICI) NanoNextNL Program 8A Nanomolecular Machines in Cellular Force-Generation (NN8A)
Employees Svenja-Marei Kalish (OIO) VICI Magdalena Preciado Lopez (OIO) SPAT Pierre Recouvreux (PD) VICI Sophie Roth (PD) MMC Olga Sytina (PD) VICI Nuria Taberner (OIO) SPAT
1. Peer reviewed Publications a. Publications in proceedings or other journals
1. A. Akhmanova, M. Dogterom, Kinesins lead aging microtubules to catastrophe, Cell 147, 966-968 (2011).
2. M. Dogterom, G.H. Koenderink, Cell-membrane mechanics: Vesicles in and tubes out, Nat. Mater. 10, 561–562 (2011).
3. J.H. Kleinschmidt, P.V. Bulieris, J. Qu, M. Dogterom, T. den Blaauwen, Association of neighboring β-strands of outer membrane protein A in lipid bilayers revealed by site-directed fluorescence quenching, J. Mol. Biol. 407, 316-332 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book )
1. S.M. Kalisch, L. Laan, M. Dogterom, Force generation by dynamic microtubules in vitro, In: Microtubule dynamics : methods and protocols / ed. Anne Straube. - New York: Humana; Springer, 2011. - pp. Chap. 11: 147-165 (Springer Protocols. Methods in Molecular Biology; 777). d. PhD theses e. Open Access publications
2. Invited lectures, posters, awards and other activities Marileen Dogterom a. Invited lectures at international conferences and meetings
1. M. Dogterom, Biopolymers and Cell Morphogenesis, Force generation at the periphery of cell, Botanical Microscopy Meeting, Wageningen, the Netherlands, April 18, 2011.
2. M. Dogterom, Subcellular Dynamics, Centering of microtubule asters by pushing and pulling forces, The 1st KIAS Conference, Seoul, Korea, July 25-28, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. M. Dogterom, The microtubule end-machine (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. M. Dogterom, Force generation by the microtubule cytoskeleton (talk), Utrecht Medisch Centrum, Utrecht, the Netherlands, February, 2011.
3. M. Dogterom, Positioning of microtubule asters by pushing and pulling forces (talk), Delft University, Delft, the Netherlands, March, 2011.
4. M. Preciado Lopez, In vitro and in vivo studies of dynamically cross-linked F-actin and microtubules (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
5. N. Taberner, Setting up a system to reconstitute cytoskeleton-based protein delivery and patterning in vitro (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
6. S. Roth, A biomimetic system to study the force transduction between an active intracellular cytoskeleton and the extracellular matrix (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
7. M. Dogterom, Force generation by the microtubule cytoskeleton (talk), Eindhoven University, Eindhoven, the Netherlands, April 2011.
8. M. Dogterom, Using pushing and pulling forces to find the middle of a cell (talk), Trends in Theory 2011, 9th Biennial Symposium of the Dutch Research School of Theoretical Physics, Dalfsen, the Netherlands, May 19-20, 2011.
9. S. Roth, A biomimetic system to study the force transduction between an active intracellular cytoskeleton and the extracellular matrix (poster), International Conference on Biological Physics, San Diego, USA, June 19-24, 2011.
Marileen Dogterom
10. M. Preciado Lopez, Dynamic crosstalk between actin and microtubules in vitro (poster), Gordon Conference on Motile and Contractile Systems, Colby-Sawyer College, New London, USA, July 31-August 5, 2011.
11. P. Recouvreaux, Automated image analysis of microtubule dynamics in fission yeast (talk), EBSA Meeting, Budapest, Hungary, August 23-27, 2011.
12. N. Taberner, Setting up a system to reconstitute cytoskeleton-based protein delivery and patterning in vitro (poster), EBSA Meeting, Budapest, Hungary, August 23-27, 2011.
13. M. Preciado Lopez, Dynamic crosstalk between actin and microtubules in vitro (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
14. S. Roth, A biomimetic system to study the force transduction between an active intracellular cytoskeleton and the extracellular matrix (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
15. S. Kalish, Against the wall: joint regulation of microtubule dynamics by force and end-binding protein (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
16. P. Recouvreaux, Microtubule-based transport of polarity factors (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
17. M. Preciado Lopez, Dynamic crosstalk between actin and microtubules in vitro (poster), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
18. N. Taberner, Setting up a system to reconstitute cytoskeleton-based protein delivery and patterning in vitro (poster), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
19. S. Roth, A biomimetic system to study the force transduction between an active intracellular cytoskeleton and the extracellular matrix (poster), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
20. M. Preciado Lopez, Dynamic crosstalk between actin and microtubules in vitro (poster), The 26th European Cytoskeletal Forum Meeting, Stresa, Italy, October 29-November 2, 2011.
21. P. Recouvreaux, Microtubule-based transport of polarity factors (poster), ASCB Meeting, Denver, USA, December 3-7, 2011.
Marileen Dogterom
22. M. Preciado Lopez, Dynamic crosstalk between actin and microtubules in vitro (talk), Paul Scherrer Institut, Villigen, Switzerland, December, 2011. c. Awards and recognitions
1. L. Laan, Eervolle vermelding Christiaan Huygens prijs voor beste proefschrift in de beta-wetenschappen. d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. M. Dogterom, Member, Scientific Advisory Committee, European School on Nanosciences and Nanotechnologies, Grenoble, France.
2. M. Dogterom, Member, Jury, Heinekenprijs of the KNAW.
3. M. Dogterom, Member, ´TWINS Raad´ of the KNAW (Dutch Academy of Sciences).
4. M. Dogterom, Member, FOM Werkgemeenschapscommissie ´Fysica van Leven´.
5. M. Dogterom, Member, Scientific Advisory Board, Göttingen Graduate School for Neurosciences, Biophysics, and Molecular Biosciences, Germany.
6. M. Dogterom, Member, Editorial Board, Cell.
7. M. Dogterom, Member, Jury for the FOM-Projectruimte.
8. M. Dogterom, Co-organizer, 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects FEI company via NN Program. c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet e. Other professional products (software, prototypes, etc.) Marileen Dogterom
Outreach
1. M. Dogterom, Contribution to LappTop program for high school girls, Physics Department Leiden University, Leiden, the Netherlands, February, 2011.
2. M. Dogterom, Master course Advanced Biophysics, Leiden University, Leiden, the Netherlands, Spring 2011.
3. M. Dogterom, Nanofysica in de levende cel, Woudschoten Conference for Physics teachers, December, 2011. Sander Tans
Group S.J. Tans 2011
Funding FOM-Program Physics of the Genome (DNAA) FOM-Program Spatial Design of Biochemical Regulation Networks (SPAT) FOM-Program Single Molecule Protein Aggregation (SMPA) FOM-Projectruimte (PR) NISB Glue Project (NISB) NWO-VIDI (VIDI)
Employees Sergey Bezrukavnikov (OIO) SMPA Sarah Boulineau (OIO) NISB Alireza Mashaghi Tabari (OIO) PR Fatemeh Moayed (OIO) personal funding Philippe Nghe (PD) DNAA Vanda Sunderlikova (lab. assistant) SPAT Marjon de Vos (OIO) VIDI Noreen Walker (OIO) SPAT
1. Academic publications a. Peer reviewed Publications
1. A. Mashaghi, P.J. Vach, S.J. Tans, Noise reduction by signal combination in Fourier space applied to drift correction in optical tweezers, Rev. Sci. Instr. 82, 115103 (2011).
2. F.J. Poelwijk, P.D. Heyning, M.G.J. de Vos, D.J. Kiviet, S.J. Tans, Optimality and evolution of transcriptionally regulated gene expression, BMC Syst. Biol. 5, 128 1-34 (2011).
3. F.J. Poelwijk, M.G.J. de Vos, S.J. Tans, Tradeoffs and optimality in the evolution of gene regulation, Cell 146, 462-470 + supporting material (2011).
4. A.J. Jakobi, A. Mashaghi, S.J. Tans, E.G. Huizinga, Calcium modulates force sensing by the von Willebrand factor A2 domain, Nat. Commun. 2, 385 1-9 (2011).
5. I. Kusters, N. Mukherjee, M.R. de Jong, S.J. Tans, A. Koçer, A.J.M. Driessen, Taming membranes: functional immobilization of biological membranes in hydrogels, PLoS One 6, e20435 1-8 (2011).
6. F.J. Poelwijk, S. Tanase-Nicola, D.J. Kiviet, S.J. Tans, Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes, J. Theor. Biol. 272, 141-144 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) Sander Tans d. PhD theses e. Open Access publications
1. I. Kusters, N. Mukherjee, M.R. de Jong, S.J. Tans, A. Koçer, A.J.M. Driessen, Taming membranes: functional immobilization of biological membranes in hydrogels, PLoS One 6, e20435 1-8 (2011).
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. S.J. Tans, Folding guided by chaperones, SMB Conference 2011, Aspen, USA, January 9- 15, 2011.
2. S.J. Tans, A single-molecule view on Trigger Factor mediated folding, EMBO Conference: the Biology of Molecular Chaperones, Grudlsee, Austria, May 20-24, 2011.
3. S.J. Tans, Optimality and evolutionary constraint in complex environments, Mind the Gap 2011, Köln, Germany, September 26-27, 2011.
4. S.J. Tans, Optimality and evolutionary constraint in variable environments, Selection in Population Genetics, Paris, France, December 6-7, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. A. Mashaghi, A gentle touch to guide protein folding (talk), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
2. A. Mashaghi, P. Vach, A. Mogk, B. Bukau, S.J. Tans, Direct observation of protein disaggregation mediated by the ClpB/KJE chaperone system (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
3. P. Nghe, M. Kogenaru, S.J. Tans, Epistasis in signalling cascades (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
4. S. Boulineau, Diauxic shift in single cells (poster), Physics and Biological Systems, Orsay, France, June 14-17, 2011.
5. P. Nghe, D. Kiviet, S. Boulineau, S.J. Tans, Noise transmission in Metabolic networks (poster), Physics and Biological Systems, Orsay, France, June 14-17, 2011.
6. M.G.J. de Vos, S.J. Tans, Fitness landscapes in variable environments (talk), Dept. Civil and Environmental Engineering, MIT, Boston, USA, August, 2011.
Sander Tans
7. M.G.J. de Vos, F.J. Poelwijk, N. Tanyi, N. Battich, S.J. Tans, The role of genotype by environment interactions in adaptive evolutionary trajectories (poster), The Fifth q-bio Conference, Santa Fe, USA, August 10-13, 2011.
8. P. Nghe, M. Kogenaru, S.J. Tans, Epistasis in signalling cascades (poster), The Fifth q- bio Conference, Santa Fe, USA, August 10-13, 2011.
9. P. Nghe, Noise transmission in Metabolic networks (talk), ESPCI, Paris, France, September, 2011.
10. S. Boulineau, Diauxic shift in single cells (poster), The 3rd EMBO Meeting, Vienna, Austria, September 10-13, 2011.
11. M.G.J. de Vos, F.J. Poelwijk, N. Tanyi, N. Battich, S.J. Tans, The role of genotype by environment interactions in adaptive evolutionary trajectories (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
12. A. Mashaghi, S. Bezrukavnikov, S.J. Tans, Unraveling chaperone activity of DnaK system at the single molecule level (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
13. A. Mashaghi, A. Jakobi, S.J. Tans, E. Huizinga, Force sensing by calcium coordination in the von Willebrand A2 domain (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
14. S.J. Tans, How do chaperones affect the protein conformational search? (talk), Ecole Normale Superieure, Paris, France, December 12, 2011.
15. M.G.J. de Vos, S.J. Tans, Crossing adaptive landscapes in variable environments (talk), Lab of Genetics, Wageningen University, Wageningen, the Netherlands, December, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. S.J. Tans, Member, Beoordelingscommissie, ALW Open Programma, Molecule tot organisme.
2. S.J. Tans, Member, Beoordelingscommissie, NWO TOP/ECHO.
3. S.J. Tans, Member, Jury, FOM Natuurkunde Proefschrift Prijs 2011.
3. Knowledge transfer (societal and economic) Sander Tans a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet
1. Cellen spiegelen zich aan omgeving, Scienceguide.nl, June 28, 2011.
2. Calcium voor sterke eiwitten, C2W.nl, July 12, 2011.
3. Nieuw inzicht in voorkomen trombose, Gezondheidsnet.nl, July 12, 2011.
4. Eén atoom regelt bloedstelping, Utrecht.nieuws.nl, July 12, 2011.
5. Moleculair inzicht in voorkomen trombose, Nieuwsbank.nl, July 12, 2011.
6. Moleculair inzicht in voorkomen trombose, Nu.nl, July 12, 2011.
7. Eén atoom regelt bloedstelping, Zorgkrant.nl, July 12, 2011.
8. Evolutie cel betrapt in reageerbuis, De Volkskrant, July 30, 2011.
9. De evolutie van een bacterie betrapt in het lab, NRC Handelsblad, Wetenschap, August 2, 2011.
10. C. Marx, Evolving the Anti-LacI Repressor, Cell, Preview, August 5, 2011.
11. Cellen zijn spiegel van omgeving, EOS Magazine, No. 9, September, 2011. e. Overige professionele producten (software, prototypes, etc.)
Outreach
1. S.J. Tans, Lecture series on Cellular Dynamics, Delft Univeristy, Delft, the Nederlands.
Gijsje Koenderink
Group G.H. Koenderink 2011
Funding FOM-Program Mechanosensing and Mechanotransduction by Cells (MMC) FOM-Program Spatial Design of Biochemical Regulation Networks (SPAT) FOM-Projectruimte (PR) FOM-DPI-TIFN IPP Multi-scale structure and mechanics of collagenous materials (BRM) FOM/Profibrix MiniIPP (Profibrix) Human Frontiers Young Investigator grant (HF) NWO-VIDI (VIDI) Van Gogh programme Frans/Nederlandse Akademie (Van Gogh) NanoNextNL Program 5B Molecular Structure of Food (NN5B)
Employees Baldo Alonso Latorre (PD) PR Jose Alvarado (OIO) VIDI Suzanne Detiger (gast) - Corianne Gelderloos (OIO) BRM Brian Gentry (PD) HF Alexandra Grigore (stagiair) - Karin Jansen (OIO) MMC Jeanette Nguyen (OIO) NN5B Izabela Piechocka (PD) Profibrix Magdalena Preciado Lopez (OIO) SPAT Bjorn Stuhrmann (PD) HF Feng-Ching Tsai (OIO) VIDI Martijn de Wild (OIO) BRM
1. Academic publications a. Peer reviewed Publications
1. J.L. Bron, L.A. Vonk, T.H. Smit, G.H. Koenderink, Engineering alginate for intervertebral disc repair, J. Mech. Behav. Biomed. Mater. 4, 1196-1205 (2011).
2. M. Dogterom, G.H. Koenderink, Cell-membrane mechanics: Vesicles in and tubes out, Nat. Mater. 10, 561–562 (2011).
3. M. Soares e Silva, M. Depken, B. Stuhrmann, M. Korsten, F.C. MacKintosh, G.H. Koenderink, Active multistage coarsening of actin networks driven by myosin motors, PNAS 108, 9408-9413 (2011).
4. Y.C. Lin, G.H. Koenderink, F.C. MacKintosh, D.A. Weitz, Control of non-linear elasticity in F-actin networks with microtubules, Soft Matter 7: 902-906 (2011)
Gijsje Koenderink
5. I. Piechocka, A.S.G. van Oosten, R.G.M. Breuls, G.H. Koenderink, Rheology of heterotypic collagen networks, Biomacromolecules 12, 2797-2805 (2011).
6. F.C. Tsai, B. Stuhrmann, G.H. Koenderink, Encapsulation of active cytoskeletal protein networks in cell-sized liposomes, Langmuir 27, 10061–10071 (2011).
7. M. Soares e Silva, J. Alvarado, J. Nguyen, N. Georgoulia, B.M. Mulder, G.H. Koenderink, Self-organized patterns of actin filaments in cell-sized confinement, Soft Matter 7, 10631-10641 (2011).
8. C.C. van den Akker, M.F.M. Engel, K.P. Velikov, M. Bonn, G.H. Koenderink, Morphology and bending rigidity of amyloid fibrils are correlated to peptide molecular structure, J. Am. Chem. Soc. 133, 18030–18033 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses
1. M. Soares e Silva, Structure and dynamics of active actin myosin networks-an in vitro perspective, Vrije Universiteit Amsterdam, October 21, 2011.
2. I.K. Piechocka, Biopolymers: from structural hierarchy to nonlinear rheology, Vrije Universiteit Amsterdam, November 23, 2011. e. Open Access publications
1. M. Soares e Silva, M. Depken, B. Stuhrmann, M. Korsten, F.C. MacKintosh, G.H. Koenderink, Active multistage coarsening of actin networks driven by myosin motors, PNAS 108, 9408-9413 (2011).
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. G.H. Koenderink, Active patterning of the cytoskeleton by myosin II motors, 55th Biophysical Society Annual Meeting, Baltimore, USA, March 5-9, 2011.
2. G.H. Koenderink, Physics of biological soft matter, Developmental Mechanobiology Workshop, Vrije Universiteit, Amsterdam, the Netherlands, June 15, 2011.
3. B. Alonso-Latorre, K. Jansen, R. G. Bacabac, G. H.Koenderink, Cell mechanical behavior in 2D and 3D environments, 5th Shanghai International Conference on Biophysics and Molecular Biology, Shanghai, China, November 4-8, 2011. Gijsje Koenderink b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. G.H. Koenderink, Body World: Designer materials from nature (talk), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
2. B. Stuhrmann, F.C. Tsai, G.H. Koenderink, Confinement effects on structure, mechanics, and processive dynamics of a biomimetic cytoskeleton (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
3. J. Alvarado, M. Soares e Silva, J. Nguyen, N. Georgoulia, B.M. Mulder, G.H. Koenderink, Claustrophobic filaments: Actin filaments self-align in cell-sized confinement (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
4. F.C. Tsai, B. Stuhrmann, G.H. Koenderink, Dynamics of active biopolymer network driven membranes (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
5. B. Gentry, P. Noguera, J. Plastino, L. Kreplak, G.H. Koenderink, Mechanical properties of in vitro actin gels (poster), Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
6. B. Gentry, S. van der Meulen, G.H. Koenderink, VASP-mediated bundling in actin networks (talk), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
7. F.C. Tsai, B. Stuhrmann, G.H. Koenderink, Encapsulating active cytoskeletal networks in giant liposomes (talk), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
8. M. Soares e Silva, J. Alvarado, J. Nguyen, N. Georgoulia, G.H. Koenderink, Claustrophobic filaments: F-actin networks self-organize under confinement (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
9. M. Preciado López, A. Akhmanova, M. Dogterom, G.H. Koenderink, In vitro and in vivo studies of dynamically cross-linked F-actin and microtubules (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
10. B. Stuhrmann, F.C. Tsai, G. Mul, G.H. Koenderink, Physical principles of cellular mechanosensitivity (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
Gijsje Koenderink
11. J. Alvarado, M. Soares e Silva, J. Nguyen, N. Georgoulia, B.M. Mulder, G.H. Koenderink, Claustrophobic filaments: Actin filaments self-align in cell-sized confinement (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
12. M.L. de Wild, G.H. Koenderink, AFM on collagen in liquid with a counterintuitive result (poster), BioRelated Materials Day, Utrecht, the Netherlands, May 10, 2011.
13. F.C. Tsai, Encapsulating active actomyosin networks in giant liposomes (talk), VU-AMOLF Meeting, Amsterdam, the Netherlands, May 11, 2011.
14. B. Stuhrmann, A laser microrheology setup for the in vitro investigation of cell mechanosensory mechanisms (talk), VU-AMOLF Meeting, Amsterdam, the Netherlands, May 11, 2011.
15. G.H. Koenderink, Physics of cell architecture and mechanics (talk), Institute of Theoretical Physics, University of Amsterdam, Amsterdam, the Netherlands, May 12, 2011.
16. J. Alvarado, M. Soares e Silva, J. Nguyen, N. Georgoulia, B.M. Mulder, G.H. Koenderink, Claustrophobic filaments: Actin filaments self-align in cell-sized confinement (talk), Wageningen University, Wageningen, the Netherlands, May 26, 2011.
17. I.K. Piechocka, In vitro reconstitution of composite networks of vimentin and microtubules (poster), 7th European Conference on Intermediate Filaments in Health and Diseases, Mykonos, Greece, June 16-19, 2011.
18. K.A. Jansen, Characterization of force generation of cells embedded in fibrin gels: traction force microscopy, rheology and optical tweezers (talk), MechanobiologyNL 2nd Meeting, Amsterdam, the Netherlands, June 11, 2011.
19. G.H. Koenderink, Physics of cell architecture and mechanics (talk), Max Planck Institute of Biochemistry, Martinsried, Germany, July 4, 2011.
20. J. Alvarado, G.H. Koenderink, Reverse-engineering actomyosin contractility (talk), Université de la Mediterranée, Marseilles, France, July 19, 2011.
21. M. Preciado López, A. Akhmanova, M. Steinmetz, M. Dogterom, G.H. Koenderink, Dynamic crosstalk between actin and microtubules in vitro (poster), Gordon Conference on Motile and Contractile Systems, Colby-Sawyer College, New London, USA, July 31-August 5, 2011.
22. F.C. Tsai, Encapsulating active actomyosin networks in giant liposomes (poster), EBSA Meeting, Budapest, Hungary, August 23-27, 2011.
Gijsje Koenderink
23. B. Stuhrmann, F.C. Tsai, G. Mul, G.H. Koenderink, Physics of cellular mechanosensitivity studied with biomimetic actin-filled liposomes (poster), EBSA Meeting, Budapest, Hungary, August 23-27, 2011.
24. J. Nguyen, C. Gelderloos, G.H. Koenderink, Liquid crystalline phase behaviour of amyloid-beta (1-42) fibrils (poster), Amyloid Fibrils, Prions and Precursors: Molecules for Targeted Intervention, Halle, Germany, August 25-28, 2011.
25. F.C. Tsai, Encapsulating active cytoskeletal networks in cell-sized liposomes (talk), KNAW, Amsterdam, the Netherlands, September 13, 2011.
26. F.C. Tsai, Encapsulating active actomyosin networks in giant liposomes (poster), Workshop on biomaterials and their interactions with biological and model membranes, Salou, Spain, September 19-23, 2011.
27. F.C. Tsai, Encapsulating active actomyosin networks in giant liposomes (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
28. J. Alvarado, G.H. Koenderink, Reverse-engineering actomyosin contractility (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
29. M. Preciado López, A. Akhmanova, M. Steinmetz, M. Dogterom, G.H. Koenderink, Dynamic crosstalk between actin and microtubules in vitro (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
30. J. Nguyen, C. Gelderloos, G.H. Koenderink, Liquid crystalline phase behaviour of amyloid fibril (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
31. B. Stuhrmann, F.C. Tsai, G.H. Koenderink, Physics of Cellular Self-Organization Studied with Biomimetic Actin-Filled Liposome (talk), EAM Conference Geometry of Interfaces, Primosten, Croatia, October 7, 2011.
32. B. Stuhrmann, F.C. Tsai, G. Mul, G.H. Koenderink, Physics of Cellular Self-Organization Studied with Biomimetic Actin-Filled Liposomes (talk), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
33. M. Preciado López, A. Akhmanova, M. Steinmetz, M. Dogterom, G.H. Koenderink, Dynamic crosstalk between actin and microtubules in vitro (poster), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
Gijsje Koenderink
34. F.C. Tsai, Encapsulating active actomyosin networks in giant liposomes (poster), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
35. M. Preciado López, A. Akhmanova, M. Steinmetz, M. Dogterom, G.H. Koenderink, Dynamic crosstalk between actin and microtubules in vitro (poster), The 26th European Cytoskeletal Forum Meeting, Stresa, Italy, October 29-November 2, 2011.
36. K.A. Jansen, I.K. Piechocka, R.G. Bacabac, O.M.J.A Stassen, E.M. Hol, E.H.J. Danen, G.H. Koenderink, Traction force miscroscopy in 3D gels using fibrin and fibroblasts as model system, 4th European Cell Mechanics Meeting (poster), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
37. J. Alvarado, G.H. Koenderink, Reverse-engineering actomyosin contractility (poster), 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands, October 17-19, 2011.
38. C.C. van den Akker, M. Engel, M. Bonn, G.H. Koenderink, 11th Dutch Soft Matter Meeting (talk), TU Eindhoven, Eindhoven, the Netherlands, November 7, 2011.
39. G.H. Koenderink, Myosin motor control over cytoskeletal structure and mechanics (talk), Georg-August Universitat Goettingen, Goettingen, Germany, November 9, 2011.
40. G.H. Koenderink, Myosin motor control over cytoskeletal structure and mechanics (talk), BioQuant, Heidelberg University, Heidelberg, Germany, November 17, 2011.
41. J. Alvarado, G.H. Koenderink, Reverse-engineering actomyosin contractility (talk), Cell Shape Changes Course, Institut Curie, Paris, France, December 1, 2011.
42. J. Alvarado, M. Soares e Silva, J. Nguyen, N. Georgoulia, B.M. Mulder, G.H. Koenderink, Claustrophobic filaments: Actin filaments self-align in cell-sized confinement (poster), Cell Shape Changes Course, Institut Curie, Paris, France, December 12, 2011.
43. K.A. Jansen, Optical Tweezer Experiments for microrheology purposes (talk), Mechanobiology NL 3th Meeting, Leiden, the Netherlands, December 14, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. G.H. Koenderink, Member, Bèta-Ambassadeursnetwerk.
2. G.H. Koenderink, Member, DJA (Young Academy) of the KNAW.
Gijsje Koenderink
3. G.H. Koenderink, Member, Jury, Heinekenprijs of the KNAW.
4. G.H. Koenderink, Member, Editorial Board, Biophysical Journal.
5. G.H. Koenderink, Member, Organization Committee, Bio(-related) Materials Meeting 2011, Utrecht, May 10, 2011.
6. G.H. Koenderink, Member, Program Committee, Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
7. G.H. Koenderink, Chair, Organizing Committee, 4th European Cell Mechanics Meeting, Amsterdam, the Netherlands.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet
1. Net van trekdraden geeft cellen vorm, De Volkskrant, May 23, 2011. e. Other professional products (software, prototypes, etc.)
Outreach
Bela Mulder
Group B.M. Mulder 2011
Funding FOM-Program Spatial Design of Biochemical Regulation Networks (SPAT) FOM-Program DNA in action: Physics of the Genome (DNAA) NCSB-CBSG Program Systems Biology (NCSB)
Employees Debasish Chaudhuri (PD) DNAA Eva Deinum (OIO) NCSB Ioana Garlea (OIO) SPAT Arthur Newton (stagiair) - Leander Schuitman (stagiair) -
1. Academic publications a. Peer reviewed Publications
1. M. Soares e Silva, J. Alvarado, J. Nguyen, N. Georgoulia, B.M. Mulder, G.H. Koenderink, Self-organized patterns of actin filaments in cell-sized confinement, Soft Matter 7, 10631-10641 (2011).
2. E. Eggen, M.N. de Keijzer, B.M. Mulder, Self-regulation in tip growth: the role of cell wall ageing, J. Theor. Biol. 283, 113-121 (2011).
3. E.E. Deinum, S.H. Tindemans, B.M. Mulder, Taking directions: the role of microtubule- bound nucleation in the self-organization of the plant cortical array, Phys. Biol. 8, 056002 1- 11 (2011).
4. D. Chaudhuri, A. Dhar, Stochastic pump of interacting particles, Europhys. Lett. 94, 30006 1-5 (2011).
5. D. Chaudhuri, B.M. Mulder, Size and shape of excluded volume polymers confined between parallel plates, Phys. Rev. E 83, 031803 1-14 (2011).
6. U. Basu, D. Chaudhuri, P.K. Mohanty, Biomodal response in periodically driven diffusive systems, Phys. Rev. E 83, 031115 1-6 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses e. Open Access publications
2. Invited lectures, posters, awards and other activities Bela Mulder a. Invited lectures at international conferences and meetings
1. B.M. Mulder, How entropic forces can drive chromosome organization, 55th Biophysical Society Annual Meeting, Baltimore, USA, March 5-9, 2011.
2. B.M. Mulder, Taking directions: organizational principles of plant cortical microtubule arrays, RMS Botanical Microscopy Meeting, Wageningen, the Netherlands, April 16- 21, 2011.
3. B.M. Mulder, Self-organization of microtubules in the plant cytoskeleton, KITPC Meeting ‘Growth of Hierarchical Functional Materials in Complex Fluids’, Beijing, China, July 4-8, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. B.M. Mulder, Survival of the aligned: modelling the cortical microtubule array in plant cells (talk), BioQuant Seminar, Heidelberg University, Heidelberg, Germany, January 25, 2011.
2. E.E. Deinum, Manipulating auxin transport: Different strategies leave different signatures (talk), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
3. I. Garlea, Modeling of actin filaments in confinement (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
4. B.M. Mulder, Survival of the aligned: modelling the cortical microtubule array in plant cells (talk), University of Stuttgart, Stuttgart, Germany, May 2011.
5. E.E. Deinum, Manipulating auxin transport: Different strategies leave different signatures (talk), Annual Meeting of the Dutch Society for Theoretical Biology, Schoorl, the Netherlands, May 19-20, 2011.
6. E.E. Deinum, The importance of parental guidance: The role of microtubule-bound nucleation on the selforganisation of the plant cortical array (talk), Cold Spring Harbor Asia Conference ‘Plant Cell and Developmental Biology’, Suzhou, China, May 31- June 4, 2011.
7. E.E. Deinum, Manipulating auxin transport: Different strategies leave different signatures (poster), Cold Spring Harbor Asia Conference ‘Plant Cell and Developmental Biology’, Suzhou, China, May 31-June 4, 2011.
8. I. Garlea, Modelling of actin filaments in confinement (poster), International Conference on Biological Physics, San Diego, USA, June 19-24, 2011.
Bela Mulder
9. E.E. Deinum, Manipulating auxin transport: different strategies leave different signatures (talk), European Conference on Mathematical and Theoretical Biology, Krakow, Poland, June 28-July 2, 2011.
10. B.M. Mulder, How entropic forces can drive chromosome organization (talk), KITPC Meeting ‘Growth of Hierarchical Functional Materials in Complex Fluids’, Beijing, China, July 4-8, 2011.
11. E.E. Deinum, Manipulating auxin transport: Different strategies leave different signatures (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
12. I. Garlea, Modelling of actin filaments in confinement (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
13. E.E. Deinum, The route towards order in the plant cell cortical array (talk), Annual Meeting of the Netherlands Consortium for Systems Biology, Soesterberg, the Netherlands, October 31, 2011.
c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. B.M. Mulder, Co-organizer, 4th European Cell Mechanics Meeting.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet e. Other professional products (software, prototypes, etc.)
Outreach
1. B.M. Mulder, Tip Growth, Onderwijsmodule in EZO22306 ‘Developmental Biology of Plants and Animals’, Universiteit Wageningen, 2011.
Bela Mulder
2. B.M. Mulder, Confined Polymers, Lectures at the KITPC Summer School on Hierarchical Functional Materials, Beijing, China, 2011.
3. B.M. Mulder, Waarom zijn planten lang en dun, AMOLF bezoek Staring College Lochem, 2011.
4. B.M. Mulder, Randomness, Onderwijsmodule in PPS21306 ´Modeling Biological Systems´, Wageningen University, 2011.
Pieter Rein ten Wolde
Group P.R. ten Wolde 2011
Funding FOM-Program Spatial design of biochemical regulation networks (SPAT) FOM-Program Expanding society’s toolbox to harvest solar energy (BF) FOM-Program DNA in Action (DNAA) FOM-Projectruimte (PR) NWO-VICI (VICI)
Employees Nils Becker (PD) DNAA Mark Bosman (stagiair) - Chris Govern (PD) VICI Andrew Mugler (PD) VICI Joris Paijmans (OIO) PR Wiet de Ronde (OIO) VICI Thomas Sokolowski (OIO) SPAT Martijn Wehrens (stagiair) -
1. Academic publications a. Peer reviewed Publications
1. M.J. Morelli, R.J. Allen, P.R. ten Wolde, Effects of macromolecular crowding on genetic networks, Biophys. J. 101, 2882–2891 (2011).
2. S. Meyer, N.B. Becker, S.H. Syed, D. Goutte-Gattat, M.S. Shukla, J.J. Hayes, D. Angelov, J. Bednar, S. Dimitrov, R. Everaers, From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem, Nucl. Acids Res. 39, 9139-9154 (2011).
3. W.H. de Ronde, F. Tostevin, P.R. ten Wolde, Multiplexing biochemical signals, Phys. Rev. Lett. 107, 048101 (2011).
4. F. Tostevin, Precision of sensing cell length via concentration gradients, Biophys. J. 100, 294-303 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses e. Open Access publications
1. W.H. de Ronde, F. Tostevin, P.R. ten Wolde, Multiplexing biochemical signals, Phys. Rev. Lett. 107, 048101 (2011). Pieter Rein ten Wolde
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. P.R. ten Wolde, Spatio-temporal correlations in biochemical networks, Gordon Conference on Stochastic Physics in Biology, Ventura, USA, January 23–27, 2011.
2. P.R. ten Wolde, The robust ticking of a circadian clock, 55th Biophysical Society Annual Meeting, Baltimore, USA, March 5-9, 2011.
3. P.R. ten Wolde, On the art of modelling biochemical networks, Systems Biology of Cells and Tissues, Dresden, Germany, May 16, 2011.
4. P.R. ten Wolde, The robust ticking of a circadian clock, Physics and Biological Systems, Orsay, France, June 14-17, 2011.
5. P.R. ten Wolde, The robust ticking of a circadian clock: Why two oscillators can be much more stable than one, Workshop Stochastic Systems Biology, Monte Verita, Italy, July 20–22, 2011.
6. P.R. ten Wolde, On the importance of spatio-temporal correlations, The Fifth q-bio Summer School, Los Alamos, USA, August 9, 2011.
7. P.R. ten Wolde, The robust ticking of a circadian clock: Why two oscillators can be much more stable than one, The Fifth q-bio Conference, Santa Fe, USA, August 10-13, 2011.
8. P.R. ten Wolde, The robust ticking of a circadian clock: Why two oscillators can be much more stable than one, European Biological Rhythms Society Congress, Oxford, UK, August 20-26, 2011.
9. A. Mugler, Membrane clustering and the role of rebinding in biochemical signaling, Workshop on Stochasticity in Biochemical Reaction Networks, Banff, Canada, September 11-16, 2011.
10. N. Becker, Simulating rare transitions in non-stationary systems, ACMM Fall Symposium '11, Amsterdam, the Netherlands, December 9, 2011.
11. P.R. ten Wolde, Robust formation of gene expression patterns, Seminar Physics of Biological Function – Multicellular systems, Bad Honnef, Germany, December 12-15, 2011.
12. N. Becker, Rare switching in non-stationary gene regulation networks, Seminar Physics of Biological Function – Multicellular systems, Bad Honnef, Germany, December 12-15, 2011. Pieter Rein ten Wolde b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. A. Mugler, Telling time with an intrinsically noisy clock (talk), Gordon Conference on Stochastic Physics in Biology, Ventura, USA, January 23–27, 2011.
2. W.H. de Ronde, F. Tostevin, P.R. ten Wolde, Multiplexing Biochemical Signals (poster), Gordon Conference on Stochastic Physics in Biology, Ventura, USA, January 23–27, 2011.
3. W.H. de Ronde, Pushing Information through the hourglass: Multiplexing Biochemical Signals (talk), KNAW Meeting, Amsterdam, the Netherlands, January, 2011.
4. T.R. Sokolowski, P.R. ten Wolde, Pattern Formation due to Diffusion and Active Transport and its Role in Yeast Morphogenesis (talk), SPAT Meeting, AMOLF, Amsterdam, the Netherlands, March 11, 2011.
5. A. Mugler, How does membrane clustering affect signaling? Insights from a simple model (talk), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
6. W.H. de Ronde, Pushing Information through the hourglass: Multiplexing Biochemical Signals (talk), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
7. N. Becker, Simulating time dependent rare events in stochastic systems (talk), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
8. T.R. Sokolowski, T. Erdmann, P.R. ten Wolde, Mutual repression enhances morphogen boundary sharpness and robustness (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
9. W.H. de Ronde, Certain to be uncertain, but how certain to be how uncertain (talk), Greater VU meeting, Amsterdam, the Netherlands, April 2011.
10. P.R. ten Wolde, Particle-based modeling of biochemical networks in time and spac (talk), University of Leuven, Leuven, Belgium, May 18, 2011.
11. T.R. Sokolowski, T. Erdmann, P.R. ten Wolde, Mutual repression enhances morphogen boundary sharpness and robustness (poster), EMBO Workshop Biophysical Mechanisms of Development, Oeiras, Portugal, May 24-27, 2011.
12. P.R. ten Wolde, The robust ticking of a circadian clock (talk), University of Groningen, Groningen, the Netherlands, June 23, 2011.
Pieter Rein ten Wolde
13. W.H. de Ronde, F. Tostevin, P.R. ten Wolde, Multiplexing Biochemical Signals (poster), Workshop Stochastic Systems Biology, Monte Verita, Italy, July 20–22, 2011.
14. N. Becker, Simulating time dependent rates for rare events (talk + poster), Workshop on Stochasticity in Biochemical Reaction Networks, Banff, Canada, September 11-16, 2011.
15. W.H. de Ronde, Pushing Information through the hourglass: Multiplexing Biochemical Signals (talk), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
16. C. Govern, Large-deviation technique to identify dynamical bottlenecks in the fluctuation- driven transitions of reaction networks (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
17. M. Bosman, P.R. ten Wolde, A generic mechanism for synchronization of genetic negative feedback oscillators to the cell division cycle (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
18. P.R. ten Wolde, The robust ticking of a circadian clock: Why two oscillators can be much more stable than one (talk), University of Amsterdam, Amsterdam, the Netherlands, October 10, 2011.
19. T.R. Sokolowski, T. Erdmann, P.R. ten Wolde, Mutual Repression enhances Gap Gene Boundary Steepness and Precision (talk), AMOLF-VU Meeting, Amsterdam, the Netherlands, December 1, 2011.
20. A. Mugler, Membrane clustering and the role of rebinding in biochemical signaling (talk), 106th Statistical Mechanics Conference, Rutgers University, New Brunswick, USA, December 18-20, 2011.
21. M. Flores, T.S. Shimizu, P.R. ten Wolde, F. Tostevin, Signalling noise enhances chemotactic drift of E. coli, 484. WE-Heraeus Seminar (poster), Seminar Physics of Biological Function – Multicellular systems, Bad Honnef, Germany, December 12-15, 2011.
22. T.R. Sokolowski, T. Erdmann, P.R. ten Wolde, Mutual Repression enhances the Steepness and Precision of Gap Gene Boundaries (poster), Seminar Physics of Biological Function – Multicellular systems, Bad Honnef, Germany, December 12-15, 2011. c. Awards and recognitions
1. T.R. Sokolowski, Poster Prize at Seminar Physics of Biological Function – Multicellular systems, Bad Honnef, Germany, December 12-15, 2011. Pieter Rein ten Wolde d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. P.R. ten Wolde, Member, DJA (Young Academy) of the KNAW.
2. P.R. ten Wolde, Member, Scientific committee, International Scientific Coordination Network (GDRI) on ‘Evolution, Regulation and Signaling (ERS)’.
3. P.R. ten Wolde, Divisional Associate Editor, Physical Review Letters.
4. P.R. ten Wolde, Member, Advisory Board, Lorentz Center Computational Science.
5. P.R. ten Wolde, Member, Advisory Board, Lorentz Center Physics.
6. P.R. ten Wolde, Member, Selection Committee new DJA members.
7. P.R. ten Wolde, Member Advisory Board, Appointment new Chair Systems Biology, Swammerdam Institute of Life Sciences (SILS), University of Amsterdam.
8. P.R. ten Wolde, Member, Advisory Board, Appointment new chair Biophysics, Leiden University.
9. P.R. ten Wolde, Member, Advisory Board, Appointment new chair Theoretical Biophysics, Vrije Universiteit.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects c. Performances on television, radio or at public events
1. P.R. ten Wolde, BNR Nieuwsradio, July 26, 2011. d. Publications in public magazines, newspapers or on the internet
1. De Jonge Akademie: Biologische klok van een cel, Volkskrant.nl, January 14, 2011.
2. Cel verstuurt signalen als computer, Science Guide, July 20, 2011. Pieter Rein ten Wolde e. Other professional products (software, prototypes, etc.)
1. www.GFRD.org: Website for Green’s Function Reaction Dynamics algorithm, a particle-based algorithm for simulating networks in time and space.
Outreach
1. P.R. ten Wolde, Het tikken van een circadiane klok (talk), UvA Students, AMOLF, Amsterdam, the Netherlands, May 19, 2011.
2. T.R. Sokolowski, Intercellular Computers and Highways – Calculation and Transport inside the Cell (talk), UvA Students, AMOLF, Amsterdam, the Netherlands, May 19, 2011.
Tom Shimizu
Group T.S. Shimizu 2011
Funding FOM-Program Spatial Design of Biochemical Regulation Networks (SPAT) FOM-Projectruimte (PR)
Employees Francois Anquez (PD) SPAT Simone Boskamp (lab. assistent) - Pieter de Haan (stagiair) - Milena Lazova (OIO) SPAT
1. Academic publications a. Peer reviewed Publications
1. M.D. Lazova, T. Ahmed, D. Bellomo, R. Stocker, T.S. Shimizu, Response rescaling in bacterial chemotaxis, PNAS 108, 13870–13875 (2011).
2. A. Celani, T.S. Shimizu, M. Vergassola, Molecular and functional aspects of bacterial chemotaxis, J. Stat. Phys. 144, 219-240 (2011). b. Publications in proceedings or other journals c. Contributions to scientific books (chapters or entire book ) d. PhD theses e. Open Access publications
1. M.D. Lazova, T. Ahmed, D. Bellomo, R. Stocker, T.S. Shimizu, Response rescaling in bacterial chemotaxis, PNAS 108, 13870–13875 (2011).
2. Invited lectures at international conferences and meetings a. Invited lectures at international conferences and meetings
1. T.S. Shimizu, Experimental dissection of chemotactic signaling dynamics in live bacteria, Stochasticity in Biochemical Reaction Networks Workshop, Banff, Canada, September 11-16, 2011.
Tom Shimizu b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. M.D. Lazova, Response-rescaling in bacterial chemotaxis (poster), BLAST XI, New Orleans, USA, January 16-20, 2011.
2. T.S. Shimizu, Response rescaling by E. Coli in temporal and spatial chemoeffector gradients (talk), KNAW Biophysics Meeting, Amsterdam, the Netherlands, February, 2011.
3. M.D. Lazova, Network-level properties of Salmonella typhimurium chemotactic signalling (poster), Physical Biology Circle Meeting, Saarbrucken, Germany, April 13-15, 2011.
4. T.S. Shimizu, Fold-change detection by the E. coli chemotaxis network, (talk), Annual Meeting of the Dutch Society for Microbiology, Arnhem, the Netherlands, April 18- 20, 2011.
5. F. Anquez, Bacterial Chemotaxis at the Single Molecule Level (poster), Workshop on Dynamics of Molecules Inside the Cell, Toulouse, France, May 30-31, 2011.
6. T.S. Shimizu, Transfer functions for bacterial chemotactic signaling (talk), Max-Planck Institute for Chemical Ecology, Jena, Germany, June 9, 2011.
7. T.S. Shimizu, Response rescaling in bacterial chemotaxi (talk), The Fifth q-bio Conference, Santa Fe, USA, August 10-13, 2011.
8. M.D. Lazova, E. coli vs. Salmonella: FRET-based comparative physiology of chemotactic network dynamics (poster), The Fifth q-bio Conference, Santa Fe, USA, August 10-13, 2011.
9. M.D. Lazova, E. coli vs. Salmonella: FRET-based comparative physiology of chemotactic network dynamics (poster), The 3rd EMBO Meeting, Vienna, Austria, September 10-13, 2011.
10. M.D. Lazova, E. coli vs Salmonella: FRET-based comparative physiology of chemotactic network dynamics (poster), 8th Horizons in Molecular Biology International PhD Student Symposium, Gottingen, Germany, September 14-17, 2011.
11. M.D. Lazova, E. coli vs. Salmonella: FRET-based comparative physiology of chemotactic network dynamics (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
12. F. Anquez, Bacterial Chemotaxis at the Single Molecule Level (poster), Dutch Meeting on Molecular and Cellular Biophysics, Veldhoven, the Netherlands, October 3-4, 2011.
Tom Shimizu
13. T.S. Shimizu, Response rescaling in bacterial chemotaxis (talk), ZMBH, University of Heidelberg, Heidelberg, Germany, November 30, 2011.
14. T.S. Shimizu, Response rescaling in bacterial chemotaxis (talk), University of Lille, Lille, France, December 2, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. T.S. Shimizu, Member, Program committee, BLAST XI, New Orleans, USA, January 16-20, 2011.
2. T.S. Shimizu, Member, Program committee, The Fifth q-bio Conference, Santa Fe, USA, August 10-13, 2011.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet e. Other professional products (software, prototypes, etc.)
Outreach
1. T.S. Shimizu, How bacteria do their Math, a highlight lecture on systems biology and cellular biophysics for first year physics students, University of Amsterdam (2011).
2. T.S. Shimizu, Biophysics, 1 lecture, 1 lab demonstration and 1 literature seminar for undergraduate physics “honors program”, University of Utrecht (2011).
Marc Vrakking
Group M. Vrakking 2011
Funding FOM-Program Plasmonics (PLSM) FOM-Projectruimte (PR) NWO-VICI (VICI) NWO-CW-TOP (TOP) EU-FLUX (FLUX) EU-ICONIC (ICONIC)
Employees Georg Gademann (OIO) VICI Ymkje Huismans (OIO) Axel Hundertmark (OIO) TOP Julia Jungmann (OIO) Freek Kelkenberg (OIO) PLSM Tania Marchenko (OIO) Arnold Rouzée (OIO) TOP Wing Kiu Siu (OIO) PR Aneta Smolkowska (OIO) ICONIC
1. Academic publications a. Peer reviewed Publications
1. A. Husakou, F. Kelkensberg, J. Herrmann, M.J.J. Vrakking, Polarization gating and circularly-polarized high harmonic generation using plasmonic enhancement in metal nanostructures, Opt. Express 19, 25346-25354 (2011).
2. E.V. Gryzlova, R. Ma, H. Fukuzawa, K. Motomura, A. Yamada, K. Ueda, A.N. Grum- Grzhimailo, N.M. Kabachnik, S.I. Strakhova, A. Rouzée, A. Hundermark, M.J.J. Vrakking, P. Johnsson, K. Nagaya, S. Yase, Y. Mizoguchi, M. Yao, M. Nagasono, K. Tono, T. Togashi, Y. Senba, H. Ohashi, M. Yabashi, T. Ishikawa, Doubly resonant three- photon double ionization of Ar atoms induced by an EUV free-electron laser, Phys. Rev. A 84, 063405 1-4 (2011).
3. F. Kelkensberg, A. Rouzée, W. Siu, G. Gademann, P. Johnsson, M. Lucchini, R.R. Lucchese, M.J.J. Vrakking, XUV ionization of aligned molecules, Phys. Rev. A 84, 051404 1-4 (2011).
4. T. Marchenko, Y. Huismans, K.J. Schafer, M.J.J. Vrakking, Criteria for the observation of strong-field photoelectron holography, Phys. Rev. A 84, 053427 1-5 (2011)
5. G. Gademann, F. Plé, P.M. Paul, M.J.J. Vrakking, Carrier-envelope phase stabilization of a terawatt level chirped pulse amplifier at 50 Hz, Opt. Express 19, 24922-24932 (2011).
Marc Vrakking
6. A. Gazibegović-Busuladžić, E. Hasović, M. Busuladžić, D.B. Milošević, F. Kelkensberg, W. Siu, M.J.J. Vrakking, F. Lépine, G. Sansone, M. Nisoli, I. Znakovskaya, M.F. Kling, Above-threshold ionization of diatomic molecules by few-cycle laser pulses, Phys. Rev. A 84, 043426 1-8 (2011).
7. X.B. Bian, Y. Huismans, O. Smirnova, K.J. Yuan, M.J.J. Vrakking, A.D. Bandrauk, Subcycle interference dynamics of time-resolved photoelectron holography with midinfrared laser pulses, Phys. Rev. A 84, 043420 1-8 (2011).
8. J.H. Jungmann, L. MacAleese, J. Visser, M.J.J. Vrakking, R.M.A. Heeren, High dynamic range bio-molecular ion microscopy with the Timepix Detector, Anal. Chem. 83, 7888-7894 (2011).
9. A. Rouzée, O. Ghafur, K. Vidma, A. Gijsbertsen, O.M. Shir, T. Bäck, A.S. Meijer, W.J. van der Zande, D. Parker, M.J.J. Vrakking, Evolutionary optimization of rotational population transfer, Phys. Rev. A 84, 033415 1-5 (2011).
10. M. Spanner, J. Mikosch, A. Gijsbertsen, A.E. Boguslavskiy, A. Stolow, Multielectron effects and nonadiabatic electronic dynamics in above threshold ionization and high-harmonic generation, New J. Phys. 13, 093010 1-17 (2011).
11. S. Zherebtsov, T. Fennel, J. Plenge, E. Antonsson, I. Znakovskaya, A. Wirth, O. Herrwerth, F. Süßmann, C. Peltz, I. Ahmad, S.A. Trushin, V. Pervak, S. Karsch, M.J.J. Vrakking, B. Langer, C. Graf, M.I. Stockman, F. Krausz, E. Rühl, M.F. Kling, Controlled near-field enhanced electron acceleration from dielectric nanospheres with intense few-cycle laser fields, Nat. Phys. 7, 656–662 (2011).
12. F. Kelkensberg, W. Siu, J.F. Pérez-Torres, F. Morales, G. Gademann, A. Rouzée, P. Johnsson, M. Lucchini, F. Calegari, J.L. Sanz-Vicario, F. Martín, M.J.J. Vrakking, Attosecond control in photoionization of hydrogen molecules, Phys. Rev. Lett. 107, 043002 1-4 (2011).
13. S. Zherebtsov, A. Wirth, T. Uphues, I. Znakovskaya, O. Herrwerth, J. Gagnon, M. Korbman, V.S. Yakovlev, M.J.J. Vrakking, M. Drescher, M.F. Kling, Attosecond imaging of XUV-induced atomic photoemission and Auger decay in strong laser fields, J. Phys. B 44, 105601 1-7 (2011).
14. C.J. Eyles, M. Brouard, C.-H. Yang, J. Kłos, F.J. Aoiz, A. Gijsbertsen, A.E. Wiskerke, S. Stolte, Interference structures in the differential cross-sections for inelastic scattering of NO by Ar, Nat. Chem. 3, 597–602 (2011).
15. B. Mignolet, A. Gijsbertsen, M.J.J. Vrakking, R.D. Levine, F. Remacle, Stereocontrol of attosecond time-scale electron dynamics in ABCU using ultrafast laser pulses: a computational study, Phys. Chem. Chem. Phys. 13, 8331-8344 (2011).
16. F. Kelkensberg, G. Sansone, M.Y. Ivanov, M.J.J. Vrakking, Semi-classical model of attosecond electron localization in dissociative ionization of hydrogen, Phys. Chem. Chem. Phys. 13, 8647-8652 (2011).
Marc Vrakking
17. A. Rouzée, P. Johnsson, E.V. Gryzlova, H. Fukuzawa, A. Yamada, W. Siu, Y. Huismans, E. Louis, F. Bijkerk, D.M.P. Holland, A.N. Grum-Grzhimailo, N.M. Kabachnik, M.J.J. Vrakking, K. Ueda, Angle-resolved photoelectron spectroscopy of sequential three-photon triple ionization of neon at 90.5 eV photon energy, Phys. Rev. A 83, 031401 1-4 (2011).
18. G. Gademann, F. Kelkensberg, W. Siu, P. Johnsson, K.J. Schafer, M.B. Gaarde, M.J.J. Vrakking, Attosecond control of electron-ion recollision in high harmonic generation, New J. Phys. 13, 033002 1-8 (2011). b. Publications in proceedings or other journals
1. F. Kelkensberg, M.J.J. Vrakking, Attoseconde elektrondynarnica in moleculen, Nederlands Tijdschrift van Natuurkunde 77, 4-8 (2011).
2. Y. Huismans, M.J.J. Vrakking, Atoom maakt hologram van zichzelf, Nederlands Tijdschrift van Natuurkunde 77, 314-317 (2011). c. Contributions to scientific books (chapters or entire book )
1. A. Rouzée, A. Gijsbertsen, M.J.J. Vrakking, Alignment and orientation of hexapole state- selected molecules, In: Progress in Ultrafast Intense Laser Science VI / ed. K. Yamanouchi, S.L. Chin, P. Agostini and G. Ferrante. - New York: Springer, 2010. - pp. 45-73. - ( Springer Series in Chemical Physics; 99). d. PhD theses
1. F. Kelkensberg, Capturing atomic and electronic motion with hight harmonic generation light pulses, Radboud University Nijmegen, June 23, 2011.
2. W. Siu, Probing molecular dynamics using novel light sources, Radboud University Nijmegen, June 27, 2011.
3. G. Gademann, Expanding the attosecond toolbox : demonstration of novel experiments, new light sources and detectors, Radboud University Nijmegen, December 12, 2011. e. Open Access publications
2. Invited lectures, posters, awards and other activities a. Invited lectures at international conferences and meetings
1. M.J.J. Vrakking, Connecting Harmonics-based and FEL-based XUV/x-ray experiments, Physics@FOM 2011, Veldhoven, the Netherlands, January 18-19, 2011.
Marc Vrakking
2. M.J.J. Vrakking, Die Abwicklung des 7. FRP-Theorie und Praxis, Erfahrungsaustausch zum 7. EU-Forschungsrahmenprogramm, Bonn, Germany, February, 2011.
3. M.J.J. Vrakking, Attosecond time-resolved molecular electron dynamics, Deutsche Physikalische Gesellschaft Spring Meeting, Dresden, Germany, March 13-18, 2011.
4. M.J.J. Vrakking, Control of electronic processes on the (sub)-femtosecond timescale, Workshop Molecular Logic, Leiden, the Netherlands, May 30-June 2, 2011.
5. M.J.J. Vrakking, Ultrafast Molecular Dynamics using Atto-second Lasers and X-ray Free Electron Lasers, Bunsentagung, Berlin, Germany, June 2-4, 2011.
6. M.J.J. Vrakking, Ultrafast molecular dynamics using attosecond and X-ray free electron lasers, Femtochemistry X, Madrid, Spain, July 10-15, 2011.
7. M.J.J. Vrakking, Ultrafast molecular dynamics using attosecond and X-ray free electron lasers, International Conference on Correlation Effects in Radiation Fields, Rostock, Germany, September 8-10, 2011. b. Other lectures and posters at (international) conferences and other (scientific) meetings
1. M.J.J. Vrakking, Connecting lab-based attosecond science with FEL research (talk), Stanford University, Stanford, USA, January, 2011.
2. M.J.J. Vrakking, Connecting lab-based attosecond science with FEL research (talk), CERN, Geneva, Switzerland, January, 2011.
3. M.J.J. Vrakking, Ul-trafast dynamics using harmonics-based and FEL-based XUV/X-ray experiments (talk), Seminar Physics and Theoretical Chemistry Laboratory, Oxford, UK, February, 2011.
4. M.J.J. Vrakking, Novel probes of ultrafast molecular dynamics (talk), Max-Planck-Institut für Quantenoptik, Garching, Germany, February, 2011. c. Awards and recognitions d. Board/Committee positions in congress organizations, scientific consortia, advisory councils, international panels, editorships at journals
1. M.J.J. Vrakking, Coordinator, ATTOFEL Summer School, Crete, Greece.
2. M.J.J. Vrakking, Chair, ATTOFEL Partner Meeting, Max-Born-Institut, Berlin.
Marc Vrakking
3. M.J.J. Vrakking, Chair, ATTOFEL Partner Meeting, Max-Planck Institut für Quantenoptik, Berlin.
4. M.J.J. Vrakking, Member, XFEL SQS Steering and Advisory Committee.
5. M.J.J. Vrakking, Member, Editorial Board of J. Phys. B.
3. Knowledge transfer (societal and economic) a. Patents b. Contacts with industry (including consultancy or other functions), new business activity resulting from projects
1. Development of a TW-level CEP-stable Ti:Sa amplifier, joint publication G. Gademann et al. c. Performances on television, radio or at public events d. Publications in public magazines, newspapers or on the internet e. Other professional products (software, prototypes, etc.)
Outreach