Download Full-Text
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected]
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School 6-25-2014 RNA Detection Technology for Applications in Marine Science: Microbes to Fish Robert Michael Ulrich University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, and the Molecular Biology Commons Scholar Commons Citation Ulrich, Robert Michael, "RNA Detection Technology for Applications in Marine Science: Microbes to Fish" (2014). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/5321 This Dissertation is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. RNA Detection Technology for Applications in Marine Science: Microbes to Fish by Robert M. Ulrich A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy College of Marine Science University of South Florida Major Professor: John H. Paul, Ph.D. Valerie J. Harwood, Ph.D. Mya Breitbart, Ph.D. Christopher D. Stallings, Ph.D. David E. John, Ph.D. Date of Approval June 25, 2014 Keywords: NASBA, grouper, Karenia mikimotoi, Enterococcus Copyright © 2014, Robert M. Ulrich DEDICATION This dissertation is dedicated to my fiancée, Dr. Shannon McQuaig for inspiring my return to graduate school and her continued support over the last four years. On no other porch in our little town have there been more impactful scientific discussions, nor more words of encouragement. ACKNOWLEDGMENTS I gratefully acknowledge the many people who have encouraged and advised me throughout my graduate studies. -
Checklist of Serranid and Epinephelid Fishes (Perciformes: Serranidae & Epinephelidae) of India
Journal of the Ocean Science Foundation 2021, Volume 38 Checklist of serranid and epinephelid fishes (Perciformes: Serranidae & Epinephelidae) of India AKHILESH, K.V. 1, RAJAN, P.T. 2, VINEESH, N. 3, IDREESBABU, K.K. 4, BINEESH, K.K. 5, MUKTHA, M. 6, ANULEKSHMI, C. 1, MANJEBRAYAKATH, H. 7, GLADSTON, Y. 8 & NASHAD M. 9 1 ICAR-Central Marine Fisheries Research Institute, Mumbai Regional Station, Maharashtra, India. Corresponding author: [email protected]; Email: [email protected] 2 Andaman & Nicobar Regional Centre, Zoological Survey of India, Port Blair, India. Email: [email protected] 3 Department of Health & Family Welfare, Government of West Bengal, India. Email: [email protected] 4 Department of Science and Technology, U.T. of Lakshadweep, Kavaratti, India. Email: [email protected] 5 Southern Regional Centre, Zoological Survey of India, Chennai, Tamil Nadu, India. Email: [email protected] 6 ICAR-Central Marine Fisheries Research Institute, Visakhapatnam Regional Centre, Andhra Pradesh, India. Email: [email protected] 7 Centre for Marine Living Resources and Ecology, Kochi, Kerala, India. Email: [email protected] 8 ICAR-Central Island Agricultural Research Institute, Port Blair, Andaman and Nicobar Islands, India. Email: [email protected] 9 Fishery Survey of India, Port Blair, Andaman and Nicobar Islands, 744101, India. Email: [email protected] Abstract We provide an updated checklist of fishes of the families Serranidae and Epinephelidae reported or listed from India, along with photographs. A total of 120 fishes in this group are listed as occurring in India based on published literature, of which 25 require further confirmation and validation. We confirm here the presence of at least 95 species in 22 genera occurring in Indian marine waters. -
Parasites of Coral Reef Fish: How Much Do We Know? with a Bibliography of Fish Parasites in New Caledonia
Belg. J. Zool., 140 (Suppl.): 155-190 July 2010 Parasites of coral reef fish: how much do we know? With a bibliography of fish parasites in New Caledonia Jean-Lou Justine (1) UMR 7138 Systématique, Adaptation, Évolution, Muséum National d’Histoire Naturelle, 57, rue Cuvier, F-75321 Paris Cedex 05, France (2) Aquarium des lagons, B.P. 8185, 98807 Nouméa, Nouvelle-Calédonie Corresponding author: Jean-Lou Justine; e-mail: [email protected] ABSTRACT. A compilation of 107 references dealing with fish parasites in New Caledonia permitted the production of a parasite-host list and a host-parasite list. The lists include Turbellaria, Monopisthocotylea, Polyopisthocotylea, Digenea, Cestoda, Nematoda, Copepoda, Isopoda, Acanthocephala and Hirudinea, with 580 host-parasite combinations, corresponding with more than 370 species of parasites. Protozoa are not included. Platyhelminthes are the major group, with 239 species, including 98 monopisthocotylean monogeneans and 105 digeneans. Copepods include 61 records, and nematodes include 41 records. The list of fish recorded with parasites includes 195 species, in which most (ca. 170 species) are coral reef associated, the rest being a few deep-sea, pelagic or freshwater fishes. The serranids, lethrinids and lutjanids are the most commonly represented fish families. Although a list of published records does not provide a reliable estimate of biodiversity because of the important bias in publications being mainly in the domain of interest of the authors, it provides a basis to compare parasite biodiversity with other localities, and especially with other coral reefs. The present list is probably the most complete published account of parasite biodiversity of coral reef fishes. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
A New Species of Diplectanid (Monogenoidea) from Paranthias Colonus (Perciformes, Serranidae) Off Peru
Parasite 2015, 22,11 Ó M. Knoff et al., published by EDP Sciences, 2015 DOI: 10.1051/parasite/2015011 urn:lsid:zoobank.org:pub:5672579C-3070-4368-8CD0-4EC18D2C01C5 Available online at: www.parasite-journal.org RESEARCH ARTICLE OPEN ACCESS A new species of diplectanid (Monogenoidea) from Paranthias colonus (Perciformes, Serranidae) off Peru Marcelo Knoff1, Simone Chinicz Cohen2,*, Melissa Querido Cárdenas2, Jorge M. Cárdenas-Callirgos3, and Delir Corrêa Gomes1 1 Laboratório de Helmintos Parasitos de Vertebrados, Instituto Oswaldo Cruz, FIOCRUZ, Av. Brasil, 4365 Rio de Janeiro, RJ, Brazil 2 Laboratório de Helmintos Parasitos de Peixes, Instituto Oswaldo Cruz, FIOCRUZ, Av. Brasil, 4365 Rio de Janeiro, RJ, Brazil 3 Museo de Historia Natural, Facultad de Ciencias Biológicas, Universidad Ricardo Palma (URP), Av. Benavides 54440, Lima 33, Peru Received 30 October 2014, Accepted 23 February 2015, Published online 9 March 2015 Abstract – Pseudorhabdosynochus jeanloui n. sp. (Monogenoidea, Diplectanidae) is described from specimens collected from the gills of the Pacific creolefish, Paranthias colonus (Perciformes, Serranidae) from a fish market in Chorrillos, Lima, Peru. The new species is differentiated from other members of the genus by the structure of its sclerotized vagina, which has two spherical chambers of similar diameter. This is the first Pseudorhabdosynochus species described from the Pacific coast of America, the third species of the genus reported from South America and the first described from a member of Paranthias. Key words: Pseudorhabdosynochus jeanloui n. sp., Monogenea, Diplectanidae, Paranthias colonus, Fish. Résumé – Une nouvelle espèce de Diplectanidae (Monogenoidea) chez Paranthias colonus (Perciformes, Serranidae) au Pérou. Pseudorhabdosynochus jeanloui n. sp. (Monogenoidea, Diplectanidae) est décrit de spécimens collectés sur les branchies de la badèche du Pacifique, Paranthias colonus (Perciformes, Serranidae) d’un marché aux poissons de Chorrillos à Lima au Pérou. -
Serranidae), in the Southeastern Adriatic Sea by Branko GLAMUZINA, Pero TUTMAN, Valter KO∏UL, Nik≈A GLAVI¶ & Bo≈Ko SKARAMUCA (1
NOTE ICHTYOLOGIQUE - ICHTHYOLOGICAL NOTE THE FIRST RECORDED OCCURRENCE OF THE MOTTLED GROUPER, MYCTEROPERCA RUBRA (SERRANIDAE), IN THE SOUTHEASTERN ADRIATIC SEA by Branko GLAMUZINA, Pero TUTMAN, Valter KO∏UL, Nik≈a GLAVI¶ & Bo≈ko SKARAMUCA (1) RÉSUMÉ. - Premier spécimen de badèche rouge, Mycteroperca The specimen in question, examined at the Biological Institute, rubra (Serranidae), signalé en mer Adriatique du sud-est. had a total length of 327 mm; a wet mass of 381.5 g; and was Le premier exemplaire de badèche rouge, Mycteroperca rubra, estimated to be 3 years old by scale reading under binocular micro- (poids = 381,5 g ; LT = 327 mm) a été capturé en mer Adriatique scope (Fig. 2). du sud-est, au large de Dubrovnik, Croatie (42,5°N), en septembre The main feature that distinguishes M. rubra from groupers of 2001. La présence de la badèche rouge dans les eaux de la mer the genus Epinephelus, especially the very similar E. caninus, is Adriatique conforte l’hypothèse du réchauffement actuel des eaux the number of soft anal fin rays: from 10 to 13, usually 11-12, for de la Méditerranée septentrionale. M. rubra; 7 to 10 for Epinephelus and 8 for E. caninus (Heemstra and Randall, 1993). Key words. - Serranidae - Mycteroperca rubra - MED - Adriatic All other important morphological characteristics of the cap- Sea - First record. tured specimen fit well with the species description provided by Heemstra and Randall (1993) (Table I). For example, the caudal- The proposition of Francour et al. (1994) that the Mediterranean fin margin is truncated, as is typical in this genus for fish from Sea is warming is supported, at least circumstantially, by the accu- 20-50 cm SL. -
Species of Pseudorhabdosynochus (Monogenea, Diplectanidae) From
RESEARCH ARTICLE Species of Pseudorhabdosynochus (Monogenea, Diplectanidae) from Groupers (Mycteroperca spp., Epinephelidae) in the Mediterranean and Eastern Atlantic Ocean, with Special Reference to the ‘ ’ a11111 Beverleyburtonae Group and Description of Two New Species Amira Chaabane1*, Lassad Neifar1, Delphine Gey2, Jean-Lou Justine3 1 Laboratoire de Biodiversité et Écosystèmes Aquatiques, Faculté des Sciences de Sfax, Université de Sfax, Sfax, Tunisia, 2 UMS 2700 Service de Systématique moléculaire, Muséum National d'Histoire Naturelle, OPEN ACCESS Sorbonne Universités, Paris, France, 3 ISYEB, Institut Systématique, Évolution, Biodiversité, UMR7205 (CNRS, EPHE, MNHN, UPMC), Muséum National d’Histoire Naturelle, Sorbonne Universités, Paris, France Citation: Chaabane A, Neifar L, Gey D, Justine J-L (2016) Species of Pseudorhabdosynochus * [email protected] (Monogenea, Diplectanidae) from Groupers (Mycteroperca spp., Epinephelidae) in the Mediterranean and Eastern Atlantic Ocean, with Special Reference to the ‘Beverleyburtonae Group’ Abstract and Description of Two New Species. PLoS ONE 11 (8): e0159886. doi:10.1371/journal.pone.0159886 Pseudorhabdosynochus Yamaguti, 1958 is a species-rich diplectanid genus, mainly restricted to the gills of groupers (Epinephelidae) and especially abundant in warm seas. Editor: Gordon Langsley, Institut national de la santé et de la recherche médicale - Institut Cochin, Species from the Mediterranean are not fully documented. Two new and two previously FRANCE known species from the gills of Mycteroperca spp. (M. costae, M. rubra, and M. marginata) Received: April 28, 2016 in the Mediterranean and Eastern Atlantic Ocean are described here from new material and slides kept in collections. Identifications of newly collected fish were ascertained by barcod- Accepted: July 8, 2016 ing of cytochrome c oxidase subunit I (COI) sequences. -
A Parasite of Deep-Sea Groupers (Serranidae) Occurs Transatlantic
Pseudorhabdosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts ( Hyporthodus spp.), one from the Mediterranean Sea and two from the western Atlantic Amira Chaabane, Jean-Lou Justine, Delphine Gey, Micah Bakenhaster, Lassad Neifar To cite this version: Amira Chaabane, Jean-Lou Justine, Delphine Gey, Micah Bakenhaster, Lassad Neifar. Pseudorhab- dosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts ( Hyporthodus spp.), one from the Mediterranean Sea and two from the western Atlantic. PeerJ, PeerJ, 2016, 4, pp.e2233. 10.7717/peerj.2233. hal- 02557717 HAL Id: hal-02557717 https://hal.archives-ouvertes.fr/hal-02557717 Submitted on 16 Aug 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Pseudorhabdosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts (Hyporthodus spp.), -
Islnad Grouper Status Review 2015
Island Grouper (Mycteroperca fusca) Status Review Report Photo Credit: Philippe Burnel © July 2015 Ronald J. Salz Fishery Biologist National Marine Fisheries Service National Oceanic and Atmospheric Administration Silver Spring, MD Acknowledgements I thank João Pedro Barreiros, Claudia Ribeiro, and Fernando Tuya for providing their time, expertise, and insights as external peer reviewers of this report. I also thank the following NMFS co-workers who provided valuable information and feedback as internal reviewers: Dwayne Meadows, Maggie Miller, Marta Nammack, Angela Somma, and Chelsea Young. Other helpful sources of information were George Sedberry, Carlos Ferreira Santos, Albertino Martins, Rui Freitas, and the Portugal National Institute of Statistics. I also thank NOAA librarian Caroline Woods for quickly responding to article requests, and Philippe Burnel for allowing me to use his island grouper photograph on the cover page. This document should be cited as: Salz, R. J. 2015. Island Grouper (Mycteroperca fusca) Draft Status Review Report. Report to National Marine Fisheries Service, Office of Protected Resources. July 2015, 69 pp. 2 Executive Summary On July 15, 2013, NMFS received a petition to list 81 species of marine organisms as endangered or threatened species under the Endangered Species Act (ESA). If an ESA petition is found to present substantial scientific or commercial information that the petitioned action may be warranted, a status review shall be promptly commenced (16 U.S.C. 1533(b)(3)(A)). NMFS determined that for 27 of the 81 species, including the island grouper (Mycteroperca fusca), the petition had sufficient merit for consideration and that a status review was warranted (79 FR 10104, February 24, 2014). -
Reef Fishes of the Bird's Head Peninsula, West Papua, Indonesia
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Mycteroperca Tigris (Valenciennes, 1833) MKT Frequent Synonyms / Misidentifications: None / None
click for previous page Perciformes: Percoidei: Serranidae 1359 Mycteroperca tigris (Valenciennes, 1833) MKT Frequent synonyms / misidentifications: None / None. FAO names: En - Tiger grouper; Fr - Badèche tigre; Sp - Cuna gata. Diagnostic characters:Body depth contained 3.1 to 3.6 times, head length 2.5 to 2.8 times in standard length (for fish 19 to 43 cm standard length). Rear nostrils of adults 3 to 5 times larger than front nostrils. Teeth large, canines well developed. Preopercle without a projecting bony lobe at ‘corner’. Gill rakers on first arch short, 8 (including 5 or 6 rudiments) on upper limb, 15 to 17 (including 7 to 9 rudiments) on lower limb, total 23 to 25. Dorsal fin with 11 spines and 15 to 17 soft rays, the interspinous membranes distinctly in- dented; anal fin with 3 spines and 11 soft rays; soft dorsal and anal fins pointed, with middle rays elon- gate in large adults; caudal fin rounded in juveniles, truncate to emarginate with exserted rays in fish 60 to 80 cm; pectoral-fin rays 17. Midlateral body scales ctenoid in juveniles, smooth in adults; lateral-line scales 82 or 83;lateral-scale series about 120.Colour: adults greenish brown to brownish grey with close-set, small, brown or orange-brown spots, the interspaces forming a pale green or whitish network; head and body darker dorsally, with 9 to 11 alternating oblique pale stripes and broader dark bars; median fins with irregular pale spots and stripes; pectoral fins pale yellow distally; inside of mouth reddish orange or dusky orange-yel- low. -
Exploitation of Reef Resources, Grouper and Other Food Fishes in the Maldives by Hassan Shakeel & Hudha Ahmed 1
14 SPC Live Reef Fish Information Bulletin #2 May 1997 generally accompany low replacement capacity, many While red-listing has no legal muscle, it is useful as a groupers spawn for extremely limited periods each guideline by policy makers and as a warning. year, at spawning sites often well known in time and Fisheries biologists and managers should heed this place. These aggregations are frequently heavily warning and look carefully at fishery developments exploited and several have completely ceased to form, in their region. The seas are not as bountiful as we almost certainly as a result of fishing; they represent once thought. Certain species, such as some of the important areas on which these species depend for groupers and seahorses and the humphead wrasse, reproduction. In specific examples in the Caribbean, it will not live up to high economic hopes for them in is likely that much of the population or sub-popula- the long term unless we resist the greed that serves tion dependent on lost aggregations has also disap- nothing but short-term gain and invites the scrutinis- peared as a result of excessive aggregation fishing. ing eye of the conservationists. A different suite of biological characteristics renders While there is concern for the status of stocks, there seahorses susceptible to fishing. Loss of critical habi- is still very little information on the biology or trade tat (such as seagrass beds) combined with low natur- of the humphead wrasse and the giant grouper. If al seahorse densities and the reproductive habits of anybody is carrying out any studies, or has any many species (such as faithful monogamy and low information on humphead wrasse or giant grouper rates of production of young) mean that recovery populations, such as numbers being caught or from anything other than light fishing levels may be exported, sizes of individuals observed in the field very slow.