Cycloaddition Mechanism and the Solvent Dependence of Rate 2285
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Chapter 12 Lecture Notes
Chemical Kinetics “The study of speeds of reactions and the nanoscale pathways or rearrangements by which atoms and molecules are transformed to products” Chapter 13: Chemical Kinetics: Rates of Reactions © 2008 Brooks/Cole 1 © 2008 Brooks/Cole 2 Reaction Rate Reaction Rate Combustion of Fe(s) powder: © 2008 Brooks/Cole 3 © 2008 Brooks/Cole 4 Reaction Rate Reaction Rate + Change in [reactant] or [product] per unit time. Average rate of the Cv reaction can be calculated: Time, t [Cv+] Average rate + Cresol violet (Cv ; a dye) decomposes in NaOH(aq): (s) (mol / L) (mol L-1 s-1) 0.0 5.000 x 10-5 13.2 x 10-7 10.0 3.680 x 10-5 9.70 x 10-7 20.0 2.710 x 10-5 7.20 x 10-7 30.0 1.990 x 10-5 5.30 x 10-7 40.0 1.460 x 10-5 3.82 x 10-7 + - 50.0 1.078 x 10-5 Cv (aq) + OH (aq) → CvOH(aq) 2.85 x 10-7 60.0 0.793 x 10-5 -7 + + -5 1.82 x 10 change in concentration of Cv Δ [Cv ] 80.0 0.429 x 10 rate = = 0.99 x 10-7 elapsed time Δt 100.0 0.232 x 10-5 © 2008 Brooks/Cole 5 © 2008 Brooks/Cole 6 1 Reaction Rates and Stoichiometry Reaction Rates and Stoichiometry Cv+(aq) + OH-(aq) → CvOH(aq) For any general reaction: a A + b B c C + d D Stoichiometry: The overall rate of reaction is: Loss of 1 Cv+ → Gain of 1 CvOH Rate of Cv+ loss = Rate of CvOH gain 1 Δ[A] 1 Δ[B] 1 Δ[C] 1 Δ[D] Rate = − = − = + = + Another example: a Δt b Δt c Δt d Δt 2 N2O5(g) 4 NO2(g) + O2(g) Reactants decrease with time. -
Organic Chemistry
Wisebridge Learning Systems Organic Chemistry Reaction Mechanisms Pocket-Book WLS www.wisebridgelearning.com © 2006 J S Wetzel LEARNING STRATEGIES CONTENTS ● The key to building intuition is to develop the habit ALKANES of asking how each particular mechanism reflects Thermal Cracking - Pyrolysis . 1 general principles. Look for the concepts behind Combustion . 1 the chemistry to make organic chemistry more co- Free Radical Halogenation. 2 herent and rewarding. ALKENES Electrophilic Addition of HX to Alkenes . 3 ● Acid Catalyzed Hydration of Alkenes . 4 Exothermic reactions tend to follow pathways Electrophilic Addition of Halogens to Alkenes . 5 where like charges can separate or where un- Halohydrin Formation . 6 like charges can come together. When reading Free Radical Addition of HX to Alkenes . 7 organic chemistry mechanisms, keep the elec- Catalytic Hydrogenation of Alkenes. 8 tronegativities of the elements and their valence Oxidation of Alkenes to Vicinal Diols. 9 electron configurations always in your mind. Try Oxidative Cleavage of Alkenes . 10 to nterpret electron movement in terms of energy Ozonolysis of Alkenes . 10 Allylic Halogenation . 11 to make the reactions easier to understand and Oxymercuration-Demercuration . 13 remember. Hydroboration of Alkenes . 14 ALKYNES ● For MCAT preparation, pay special attention to Electrophilic Addition of HX to Alkynes . 15 Hydration of Alkynes. 15 reactions where the product hinges on regio- Free Radical Addition of HX to Alkynes . 16 and stereo-selectivity and reactions involving Electrophilic Halogenation of Alkynes. 16 resonant intermediates, which are special favor- Hydroboration of Alkynes . 17 ites of the test-writers. Catalytic Hydrogenation of Alkynes. 17 Reduction of Alkynes with Alkali Metal/Ammonia . 18 Formation and Use of Acetylide Anion Nucleophiles . -
Solvent Effects on Structure and Reaction Mechanism: a Theoretical Study of [2 + 2] Polar Cycloaddition Between Ketene and Imine
J. Phys. Chem. B 1998, 102, 7877-7881 7877 Solvent Effects on Structure and Reaction Mechanism: A Theoretical Study of [2 + 2] Polar Cycloaddition between Ketene and Imine Thanh N. Truong Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, UniVersity of Utah, Salt Lake City, Utah 84112 ReceiVed: March 25, 1998; In Final Form: July 17, 1998 The effects of aqueous solvent on structures and mechanism of the [2 + 2] cycloaddition between ketene and imine were investigated by using correlated MP2 and MP4 levels of ab initio molecular orbital theory in conjunction with the dielectric continuum Generalized Conductor-like Screening Model (GCOSMO) for solvation. We found that reactions in the gas phase and in aqueous solution have very different topology on the free energy surfaces but have similar characteristic motion along the reaction coordinate. First, it involves formation of a planar trans-conformation zwitterionic complex, then a rotation of the two moieties to form the cycloaddition product. Aqueous solvent significantly stabilizes the zwitterionic complex, consequently changing the topology of the free energy surface from a gas-phase single barrier (one-step) process to a double barrier (two-step) one with a stable intermediate. Electrostatic solvent-solute interaction was found to be the dominant factor in lowering the activation energy by 4.5 kcal/mol. The present calculated results are consistent with previous experimental data. Introduction Lim and Jorgensen have also carried out free energy perturbation (FEP) theory simulations with accurate force field that includes + [2 2] cycloaddition reactions are useful synthetic routes to solute polarization effects and found even much larger solvent - formation of four-membered rings. -
Solvents and Solvent E¤Ects in Organic Chemistry
Contents 1 Introduction ......................................................... 1 2 Solute-Solvent Interactions ........................................... 7 2.1 Solutions . .......................................................... 7 2.2 Intermolecular Forces . ............................................ 12 2.2.1 Ion-Dipole Forces . ................................................. 13 2.2.2 Dipole-Dipole Forces................................................ 14 2.2.3 Dipole-Induced Dipole Forces ....................................... 15 2.2.4 Instantaneous Dipole-Induced Dipole Forces . ...................... 16 2.2.5 Hydrogen Bonding . ................................................. 17 2.2.6 Electron-Pair Donor/Electron-Pair Acceptor Interactions (EPD/EPA Interactions) . ..................................................... 23 2.2.7 Solvophobic Interactions ............................................ 31 2.3 Solvation . .......................................................... 34 2.4 Preferential Solvation................................................ 43 2.5 Micellar Solvation (Solubilization) ................................... 48 2.6 Ionization and Dissociation . ........................................ 52 3 Classification of Solvents ............................................. 65 3.1 Classification of Solvents according to Chemical Constitution ......... 65 3.2 Classification of Solvents using Physical Constants . .................. 75 3.3 Classification of Solvents in Terms of Acid-Base Behaviour. ......... 88 3.3.1 Brønsted-Lowry -
Ochem ACS Review 23 Aryl Halides
ACS Review Aryl Halides 1. Which one of the following has the weakest carbon-chlorine bond? A. I B. II C. III D. IV 2. Which compound in each of the following pairs is the most reactive to the conditions indicated? A. I and III B. I and IV C. II and III D. II and IV 3. Which of the following reacts at the fastest rate with potassium methoxide (KOCH 3) in methanol? A. fluorobenzene B. 4-nitrofluorobenzene C. 2,4-dinitrofluorobenzene D. 2,4,6-trinitrofluorobenzene 4. Which of the following reacts at the fastest rate with potassium methoxide (KOCH 3) in methanol? A. fluorobenzene B. p-nitrofluorobenzene C. p-fluorotoluene D. p-bromofluorobenzene 5. Which of the following is the kinetic rate equation for the addition-elimination mechanism of nucleophilic aromatic substitution? A. rate = k[aryl halide] B. rate = k[nucleophile] C. rate = k[aryl halide][nucleophile] D. rate = k[aryl halide][nucleophile] 2 6. Which of the following is not a resonance form of the intermediate in the nucleophilic addition of hydroxide ion to para -fluoronitrobenzene? A. I B. II C. III D. IV 7. Which chlorine is most susceptible to nucleophilic substitution with NaOCH 3 in methanol? A. #1 B. #2 C. #1 and #2 are equally susceptible D. no substitution is possible 8. What is the product of the following reaction? A. N,N-dimethylaniline B. para -chloro-N,N-dimethylaniline C. phenyllithium (C 6H5Li) D. meta -chloro-N,N-dimethylaniline 9. Which one of the reagents readily reacts with bromobenzene without heating? A. -
Enzymatic Kinetic Isotope Effects from First-Principles Path Sampling
Article pubs.acs.org/JCTC Enzymatic Kinetic Isotope Effects from First-Principles Path Sampling Calculations Matthew J. Varga and Steven D. Schwartz* Department of Chemistry and Biochemistry, University of Arizona, Tucson, Arizona 85721, United States *S Supporting Information ABSTRACT: In this study, we develop and test a method to determine the rate of particle transfer and kinetic isotope effects in enzymatic reactions, specifically yeast alcohol dehydrogenase (YADH), from first-principles. Transition path sampling (TPS) and normal mode centroid dynamics (CMD) are used to simulate these enzymatic reactions without knowledge of their reaction coordinates and with the inclusion of quantum effects, such as zero-point energy and tunneling, on the transferring particle. Though previous studies have used TPS to calculate reaction rate constants in various model and real systems, it has not been applied to a system as large as YADH. The calculated primary H/D kinetic isotope effect agrees with previously reported experimental results, within experimental error. The kinetic isotope effects calculated with this method correspond to the kinetic isotope effect of the transfer event itself. The results reported here show that the kinetic isotope effects calculated from first-principles, purely for barrier passage, can be used to predict experimental kinetic isotope effects in enzymatic systems. ■ INTRODUCTION staging method from the Chandler group.10 Another method that uses an energy gap formalism like QCP is a hybrid Particle transfer plays a crucial role in a breadth of enzymatic ff reactions, including hydride, hydrogen atom, electron, and quantum-classical approach of Hammes-Schi er and co-work- 1 ers, which models the transferring particle nucleus as a proton-coupled electron transfer reactions. -
The Arene–Alkene Photocycloaddition
The arene–alkene photocycloaddition Ursula Streit and Christian G. Bochet* Review Open Access Address: Beilstein J. Org. Chem. 2011, 7, 525–542. Department of Chemistry, University of Fribourg, Chemin du Musée 9, doi:10.3762/bjoc.7.61 CH-1700 Fribourg, Switzerland Received: 07 January 2011 Email: Accepted: 23 March 2011 Ursula Streit - [email protected]; Christian G. Bochet* - Published: 28 April 2011 [email protected] This article is part of the Thematic Series "Photocycloadditions and * Corresponding author photorearrangements". Keywords: Guest Editor: A. G. Griesbeck benzene derivatives; cycloadditions; Diels–Alder; photochemistry © 2011 Streit and Bochet; licensee Beilstein-Institut. License and terms: see end of document. Abstract In the presence of an alkene, three different modes of photocycloaddition with benzene derivatives can occur; the [2 + 2] or ortho, the [3 + 2] or meta, and the [4 + 2] or para photocycloaddition. This short review aims to demonstrate the synthetic power of these photocycloadditions. Introduction Photocycloadditions occur in a variety of modes [1]. The best In the presence of an alkene, three different modes of photo- known representatives are undoubtedly the [2 + 2] photocyclo- cycloaddition with benzene derivatives can occur, viz. the addition, forming either cyclobutanes or four-membered hetero- [2 + 2] or ortho, the [3 + 2] or meta, and the [4 + 2] or para cycles (as in the Paternò–Büchi reaction), whilst excited-state photocycloaddition (Scheme 2). The descriptors ortho, meta [4 + 4] cycloadditions can also occur to afford cyclooctadiene and para only indicate the connectivity to the aromatic ring, and compounds. On the other hand, the well-known thermal [4 + 2] do not have any implication with regard to the reaction mecha- cycloaddition (Diels–Alder reaction) is only very rarely nism. -
Diastereoisomers As Probes for Solvent Reorganizational Effects On
Chemical Physics 324 (2006) 8–25 www.elsevier.com/locate/chemphys Diastereoisomers as probes for solvent reorganizational effects on IVCT in dinuclear ruthenium complexes Deanna M. DÕAlessandro, F. Richard Keene * Department of Chemistry, School of Pharmacy and Molecular Sciences, James Cook University, Townsville, Qld. 4811, Australia Received 19 June 2005; accepted 1 September 2005 Available online 3 October 2005 Abstract 5+ 0 0 IVCT solvatochromism studies on the meso and rac diastereoisomers of [{Ru(bpy)2}2(l-bpm)] (bpy = 2,2 -bipyridine; bpm = 2,2 - bipyrimidine) in a homologous series of nitrile solvents revealed that stereochemically directed specific solvent effects in the first solvation shell dominated the outer sphere contribution to the reorganizational energy for intramolecular electron transfer. Further, solvent pro- portion experiments in acetonitrile/propionitrile mixtures indicated that the magnitude and direction of the specific effect was dependent on the relative abilities of discrete solvent molecules to penetrate the clefts between the planes of the terminal polypyridyl ligands. In particular, the specific effects were dependent on the dimensionality of the clefts, and the number, size, orientation and location of the solvent dipoles within the interior and exterior clefts. 5+ 5+ IVCT solvatochromism studies on the diastereoisomeric forms of [{Ru(bpy)2}2(l-dbneil)] and [{Ru(pp)2}2(l-bpm)] {dbneil = dibenzoeilatin; pp = substituted derivatives of 2,20-bipyridine and 1,10-phenanthroline} revealed that the subtle and systematic changes in the nature of the clefts by the variation of the bridging ligand, and the judicious positioning of substituents on the terminal ligands, profoundly influenced the magnitude of the reorganizational energy contribution to the electron transfer barrier. -
S.T.E.T.Women's College, Mannargudi Semester Iii Ii M
S.T.E.T.WOMEN’S COLLEGE, MANNARGUDI SEMESTER III II M.Sc., CHEMISTRY ORGANIC CHEMISTRY - II – P16CH31 UNIT I Aliphatic nucleophilic substitution – mechanisms – SN1, SN2, SNi – ion-pair in SN1 mechanisms – neighbouring group participation, non-classical carbocations – substitutions at allylic and vinylic carbons. Reactivity – effect of structure, nucleophile, leaving group and stereochemical factors – correlation of structure with reactivity – solvent effects – rearrangements involving carbocations – Wagner-Meerwein and dienone-phenol rearrangements. Aromatic nucleophilic substitutions – SN1, SNAr, Benzyne mechanism – reactivity orientation – Ullmann, Sandmeyer and Chichibabin reaction – rearrangements involving nucleophilic substitution – Stevens – Sommelet Hauser and von-Richter rearrangements. NUCLEOPHILIC SUBSTITUTION Mechanism of Aliphatic Nucleophilic Substitution. Aliphatic nucleophilic substitution clearly involves the donation of a lone pair from the nucleophile to the tetrahedral, electrophilic carbon bonded to a halogen. For that reason, it attracts to nucleophile In organic chemistry and inorganic chemistry, nucleophilic substitution is a fundamental class of reactions in which a leaving group(nucleophile) is replaced by an electron rich compound(nucleophile). The whole molecular entity of which the electrophile and the leaving group are part is usually called the substrate. The nucleophile essentially attempts to replace the leaving group as the primary substituent in the reaction itself, as a part of another molecule. The most general form of the reaction may be given as the following: Nuc: + R-LG → R-Nuc + LG: The electron pair (:) from the nucleophile(Nuc) attacks the substrate (R-LG) forming a new 1 bond, while the leaving group (LG) departs with an electron pair. The principal product in this case is R-Nuc. The nucleophile may be electrically neutral or negatively charged, whereas the substrate is typically neutral or positively charged. -
Predictive Models for Kinetic Parameters of Cycloaddition
Predictive Models for Kinetic Parameters of Cycloaddition Reactions Marta Glavatskikh, Timur Madzhidov, Dragos Horvath, Ramil Nugmanov, Timur Gimadiev, Daria Malakhova, Gilles Marcou, Alexandre Varnek To cite this version: Marta Glavatskikh, Timur Madzhidov, Dragos Horvath, Ramil Nugmanov, Timur Gimadiev, et al.. Predictive Models for Kinetic Parameters of Cycloaddition Reactions. Molecular Informatics, Wiley- VCH, 2018, 38 (1-2), pp.1800077. 10.1002/minf.201800077. hal-02346844 HAL Id: hal-02346844 https://hal.archives-ouvertes.fr/hal-02346844 Submitted on 5 Feb 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. 0DQXVFULSW &OLFNKHUHWRGRZQORDG0DQXVFULSW&$UHYLVLRQGRF[ Predictive models for kinetic parameters of cycloaddition reactions Marta Glavatskikh[a,b], Timur Madzhidov[b], Dragos Horvath[a], Ramil Nugmanov[b], Timur Gimadiev[a,b], Daria Malakhova[b], Gilles Marcou[a] and Alexandre Varnek*[a] [a] Laboratoire de Chémoinformatique, UMR 7140 CNRS, Université de Strasbourg, 1, rue Blaise Pascal, 67000 Strasbourg, France; [b] Laboratory of Chemoinformatics and Molecular Modeling, Butlerov Institute of Chemistry, Kazan Federal University, Kremlyovskaya str. 18, Kazan, Russia Abstract This paper reports SVR (Support Vector Regression) and GTM (Generative Topographic Mapping) modeling of three kinetic properties of cycloaddition reactions: rate constant (logk), activation energy (Ea) and pre-exponential factor (logA). -
Nucleophilic Substitution and Elimination Reactions
8 NUCLEOPHILIC SUBSTITUTION AND ELIMINATION REACTIONS substitution reactions involve the replacement of one atom or group (X) by another (Y): We already have described one very important type of substitution reaction, the halogenation of alkanes (Section 4-4), in which a hydrogen atom is re- placed by a halogen atom (X = H, Y = halogen). The chlorination of 2,2- dimethylpropane is an example: CH3 CH3 I I CH3-C-CH3 + C12 light > CH3-C-CH2Cl + HCI I I Reactions of this type proceed by radical-chain mechanisms in which the bonds are broken and formed by atoms or radicals as reactive intermediates. This 8-1 Classification of Reagents as Electrophiles and Nucleophiles. Acids and Bases mode of bond-breaking, in which one electron goes with R and the other with X, is called homolytic bond cleavage: R 'i: X + Y. - X . + R : Y a homolytic substitution reaction There are a large number of reactions, usually occurring in solution, that do not involve atoms or radicals but rather involve ions. They occur by heterolytic cleavage as opposed to homolytic cleavage of el~ctron-pairbonds. In heterolytic bond cleavage, the electron pair can be considered to go with one or the other of the groups R and X when the bond is broken. As one ex- ample, Y is a group such that it has an unshared electron pair and also is a negative ion. A heterolytic substitution reaction in which the R:X bonding pair goes with X would lead to RY and :X? R~:X+ :YO --' :x@+ R :Y a heterolytic substitution reaction A specific substitution reaction of this type is that of chloromethane with hydroxide ion to form methanol: In this chapter, we shall discuss substitution reactions that proceed by ionic or polar mechanisms' in which the bonds cleave heterolytically. -
Aromatic Substitution Reactions: an Overview
Review Article Published: 03 Feb, 2020 SF Journal of Pharmaceutical and Analytical Chemistry Aromatic Substitution Reactions: An Overview Kapoor Y1 and Kumar K1,2* 1School of Pharmaceutical Sciences, Apeejay Stya University, Sohna-Palwal Road, Sohna, Gurgaon, Haryana, India 2School of Pharmacy and Technology Management, SVKM’s NMIMS University, Hyderabad, Telangana, India Abstract The introduction or replacement of substituent’s on aromatic rings by substitution reactions is one of the most fundamental transformations in organic chemistry. On the basis of the reaction mechanism, these substitution reactions can be divided into electrophilic, nucleophilic, radical, and transition metal catalyzed. This article also focuses on electrophilic and nucleophilic substitution mechanisms. Introduction The replacement of an atom, generally hydrogen, or a group attached to the carbon from the benzene ring by another group is known as aromatic substitution. The regioselectivity of these reactions depends upon the nature of the existing substituent and can be ortho, Meta or Para selective. Electrophilic Aromatic Substitution (EAS) reactions are important for synthetic purposes and are also among the most thoroughly studied classes of organic reactions from a mechanistic point of view. A wide variety of electrophiles can effect aromatic substitution. Usually, it is a substitution of some other group for hydrogen that is of interest, but this is not always the case. For example, both silicon and mercury substituent’s can be replaced by electrophiles. The reactivity of a particular electrophile determines which aromatic compounds can be successfully substituted. Despite the wide range of electrophilic species and aromatic ring systems that can undergo substitution, a single broad mechanistic picture encompasses most EAS reactions.