Chromosome Divergence of Octodon Lunatus and Abrocoma Bennetti and the Origins of Octodontoidea (Rodentia: Histricognathi)
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Evolution of the Largest Mammalian Genome
GBE Evolution of the Largest Mammalian Genome Ben J. Evans1,*, Nathan S. Upham1,2,3,*, Goeffrey B. Golding1, Ricardo A. Ojeda4, and Agustina A. Ojeda4 1Biology Department, McMaster University, Hamilton, Ontario, Canada 2Field Museum of Natural History, Chicago, IL 3Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 4Grupo de Investigaciones de la Biodiversidad (GIB), Instituto Argentino de Investigaciones de Zonas Aridas (IADIZA), Mendoza, Argentina *Corresponding authors: E-mails: [email protected]; [email protected]. Accepted: June 21, 2017 Data deposition: Sequence data and assemblies from this study are deposited in the Sequence Read Archive of the National Center for Biotechnology Information (NCBI), study SRP102508, bioproject PRJNA380259, including RNA sequencing (RNAseq) reads and transcriptome assemblies for O. mimax, T. barrerae, X. tropicalis,andX. laevis, and whole genome sequencing (WGS) reads, for O. mimax and T. barrerae. Contigs >200 bp in length from the draft whole genome assemblies for O. mimax and T. barrerae have been deposited at DDBJ/ENA/GenBank in subproject ID SUB2517200 under the accession NDGM00000000 and NDGN00000000. The versions described in this paper are version NDGM01000000 and NDGN01000000. High abundance k-mer contig assemblies are provided in the Supplementary Material online. Abstract The genome of the red vizcacha rat (Rodentia, Octodontidae, Tympanoctomys barrerae) is the largest of all mammals, and about double the size of their close relative, the mountain vizcacha rat Octomys mimax, even though the lineages that gave rise to these species diverged from each other only about 5 Ma. The mechanism for this rapid genome expansion is contro- versial, and hypothesized to be a consequence of whole genome duplication or accumulation of repetitive elements. -
RELEVANCE of KIN SELECTION on the EVOLUTION of COOPERATION in HYSTRICOGNATH RODENTS, Octodon Degus (Molina, 1782) AS a STUDY CASE
1 RELEVANCE OF KIN SELECTION ON THE EVOLUTION OF COOPERATION IN HYSTRICOGNATH RODENTS, Octodon degus (Molina, 1782) AS A STUDY CASE. IMPORTANCIA DE LA SELECCIÓN DE PARENTESCO EN LA EVOLUCIÓN DE LA COOPERACIÓN EN ROEDORES HISTRICOGNATOS Y EN Octodon degus (Molina, 1782) COMO CASO DE ESTUDIO. Tesis entregada a la Pontificia Universidad Católica de Chile en cumplimiento parcial de los requisitos para optar al Grado de Doctor en Ciencias con mención en Ecología por ÁLVARO LY PRIETO Director de Tesis: Luis A. Ebensperger Pesce Diciembre 2020 2 A la memoria de mi padre. 3 AGRADECIMIENTOS Quiero agradecer, en primer lugar, a Luis Ebensperger, por ser un excelente director de tesis y un verdadero tutor, siempre generoso a la hora de compartir sus conocimientos, y por su infinita paciencia y buena disposición para revisar, corregir y dar consejos. A los miembros de la comisión de tesis, por sus consejos. A Cristian Hernández y su equipo por abrirme las puertas de su laboratorio en la UdeC para aprender nuevas metodologías. También agradecer a todos los amigos, familia y a mi pareja, que han sido un soporte fundamental en este largo camino, y a todos quienes contribuyeron de alguna u otra forma en la concepción de esta tesis doctoral y en su proceso. Especialmente agradecer a quienes fueron importantes en la obtención y procesamiento de mis datos, y en los debates de ideas: a mis compañeros y amigos Raúl Sobrero, Loreto Correa, Daniela Rivera, Cecilia León, Juan C. Ramírez, Gioconda Peralta y Loreto Carrasco. Agradecer al Departamento de Ecología de la Pontificia Universidad Católica y su staff, por tener siempre buena disposición para solucionar requerimientos y vicisitudes. -
Abrocoma Bennetti Waterhouse, 1837
FICHA DE ANTECEDENTES DE ESPECIE Id especie: NOMBRE CIENTÍFICO: Abrocoma bennetti Waterhouse, 1837 NOMBRE COMÚN: Ratón chinchilla de Bennett, Bori Fotografía del Abrocoma bennetti (Derechos reservados Gonzalo Santibáñez) Reino: Animalia Orden: Rodentia Phyllum/División: Chordata Familia: Abrocomidae Clase: Mammalia Género: Abrocoma Sinonimia: Abrocoma cuvieri Waterhouse, 1837. Habrocoma halvina Wayner, 1842. Abrocoma murray Wolffsohn 1916. Nota Taxonómica: Abrocoma bennetti presenta dos subespecie en Chile A. b. murrayi en las provincias de Huasco y Elqui y A. b. bennetti entre las provincias de Elqui y ribera norte del río Itata (Región del Biobío) (Muñoz-Pedreros & Gil 2009). Su cariotipo es de 2n= 64 (NF= 110) (Spotorno et al. 1998). ANTECEDENTES GENERALES Aspectos Morfológicos Ratón de pelaje muy sedoso y blando, de color café-grisáceo uniforme en el cuerpo, salvo la zona ventral de tonalidad más clara. En juveniles dominan los tonos brunos, que cambian a pigmentos grises en los adultos. La subespecie A. b. murrayi presenta pelaje largo y gris perlado, en cambio en A. b. bennetti es más corto y café. Cola un poco más corta que la cabeza y el cuerpo juntos. En las manos posee sólo cuatro dedos. Plantas y palmas cubiertas de granulaciones. Con pabellones auriculares grandes. Presenta figuras de esmalte distintas para los molares superiores e inferiores, singularidad única entre los roedores chilenos (Mann 1978). Su largo total= 325 a 405 mm, cola= 130-180 mm, tarso= 35-39 mm, peso 195-275 g Muñoz- Pedreros & Gil 2009). Aspectos R eproductivos y Conductuales De actividad nocturna (80%) y nocturna-crepuscular (20%) (Rosenmann et al. 1981). Utiliza las llamadas de alarma de Octodon degus , así mientras el degú interrumpe su alimentación con conducta de centinela, A. -
Stress, Sleep, and Sex: a Review of Endocrinological Research in Octodon Degus ⇑ Carolyn M
General and Comparative Endocrinology 273 (2019) 11–19 Contents lists available at ScienceDirect General and Comparative Endocrinology journal homepage: www.elsevier.com/locate/ygcen Review article Stress, sleep, and sex: A review of endocrinological research in Octodon degus ⇑ Carolyn M. Bauer a, , Loreto A. Correa b,c, Luis A. Ebensperger c, L. Michael Romero d a Biology Department, Adelphi University, Garden City, NY, USA b Escuela de Medicina Veterinaria, Facultad de Ciencias, Universidad Mayor, Santiago, Chile c Departamento de Ecología, Facultad de Ciencias Biológicas, P. Universidad Católica de Chile, Santiago, Chile d Department of Biology, Tufts University, Medford, MA, USA article info abstract Article history: The Common Degu (Octodon degus) is a small rodent endemic to central Chile. It has become an important Received 24 December 2017 model for comparative vertebrate endocrinology because of several uncommon life-history features – it is Revised 20 February 2018 diurnal, shows a high degree of sociality, practices plural breeding with multiple females sharing natal Accepted 11 March 2018 burrows, practices communal parental care, and can easily be studied in the laboratory and the field. Available online 12 March 2018 Many studies have exploited these features to make contributions to comparative endocrinology. This review summarizes contributions in four major areas. First are studies on degu stress responses, focusing Keywords: on seasonal changes in glucocorticoid (GC) release, impacts of parental care on offspring GC responses, Agonistic behavior and fitness consequences of individual variations of GC responses. These studies have helped confirm Circadian Female masculinization the ecological relevance of stress responses. Second are studies exploring diurnal circadian rhythms of Glucocorticoid melatonin and sex steroids. -
The Octodontidae Revisited
THE OCTODONTIDAE REVISITED UNA REVISION DE OCTODONTIDAE Milton Gallardo, R. Ojeda, C. González, and C. Ríos ABSTRACT The monophyletic and depauperate assemblage of South American octodontid rodents has experienced an extensive adaptive radiation from above-ground dwellers to subterranean, saxicolous, and gerbil-like deserticolous life forms. Complex and saltational chromosomal repatterning is a hallmark of octodontid evolution. Recent molecular evidence links these chromosome dynamics with quantum genome size shifts, and probably with reticulate evolution via introgressive hybridization in the desert dwellers Tympanoctomys barrerae and Pipanacoctomys aureus. Genome duplication represents a novel mechanism of evolution in mammals and its adaptive role is reflected in the ability of deserticolous species to colonize the extreme environment of salt flats. Unique to Tympanoctomys is a the rigid bundle of hairs behind the upper incisors which is crucial to efficiently peel saltbush leaves and probably explains its broader distribution relative to P. aureus. This feature, in association with other attributes (e. g., specialized kidneys, large bullae, feeding behavior) has enabled Tympanoctomys to cope with extreme environmental conditions. Key words: Octodontidae, Octodontids, South American mammals, tetraploidy, Tympanoctomys barrerae. RESUMEN Los octodóntidos son un grupo de roedores monofiléticos que han experimentado una extensa radiación adaptativa desde especies que viven en la superficie a formas de vida subterráneas o de tipo gerbos, especializados a la vida desertícola. La evolución de los octodóntidos está marcada por reordenamientos cromsómicos complejos y de tipo saltatorio. Las evidencias moleculares recientes indican una estrecha asociación entre esta dinámica cromosómica, los cambios genómicos cuánticos y la evolución Pp. xx-xx in Kelt, D. A., E. -
Alexander 2013 Principles-Of-Animal-Locomotion.Pdf
.................................................... Principles of Animal Locomotion Principles of Animal Locomotion ..................................................... R. McNeill Alexander PRINCETON UNIVERSITY PRESS PRINCETON AND OXFORD Copyright © 2003 by Princeton University Press Published by Princeton University Press, 41 William Street, Princeton, New Jersey 08540 In the United Kingdom: Princeton University Press, 3 Market Place, Woodstock, Oxfordshire OX20 1SY All Rights Reserved Second printing, and first paperback printing, 2006 Paperback ISBN-13: 978-0-691-12634-0 Paperback ISBN-10: 0-691-12634-8 The Library of Congress has cataloged the cloth edition of this book as follows Alexander, R. McNeill. Principles of animal locomotion / R. McNeill Alexander. p. cm. Includes bibliographical references (p. ). ISBN 0-691-08678-8 (alk. paper) 1. Animal locomotion. I. Title. QP301.A2963 2002 591.47′9—dc21 2002016904 British Library Cataloging-in-Publication Data is available This book has been composed in Galliard and Bulmer Printed on acid-free paper. ∞ pup.princeton.edu Printed in the United States of America 1098765432 Contents ............................................................... PREFACE ix Chapter 1. The Best Way to Travel 1 1.1. Fitness 1 1.2. Speed 2 1.3. Acceleration and Maneuverability 2 1.4. Endurance 4 1.5. Economy of Energy 7 1.6. Stability 8 1.7. Compromises 9 1.8. Constraints 9 1.9. Optimization Theory 10 1.10. Gaits 12 Chapter 2. Muscle, the Motor 15 2.1. How Muscles Exert Force 15 2.2. Shortening and Lengthening Muscle 22 2.3. Power Output of Muscles 26 2.4. Pennation Patterns and Moment Arms 28 2.5. Power Consumption 31 2.6. Some Other Types of Muscle 34 Chapter 3. -
Cell Populations in the Pineal Gland of the Viscacha (Lagostomus Maximus)
Histol Histopathol (2003) 18: 827-836 Histology and http://www.hh.um.es Histopathology Cellular and Molecular Biology Cell populations in the pineal gland of the viscacha (Lagostomus maximus). Seasonal variations R. Cernuda-Cernuda1, R.S. Piezzi2, S. Domínguez2 and M. Alvarez-Uría1 1Departamento de Morfología y Biología Celular, Universidad de Oviedo, Spain 2Instituto de Histología y Embriología, Universidad Nacional de Cuyo/CONICET, Mendoza, Argentina and 3Cátedra de Histología, Universidad Nacional de San Luis, Argentina Summary. Pineal samples of the viscacha, which were Introduction taken in winter and in summer, were analysed using both light and electron microscopy. The differences found The pineal gland is mainly involved in the between the two seasons were few in number but integration of information about environmental significant. The parenchyma showed two main cell conditions (light, temperature, etc.), and in the populations. Type I cells occupied the largest volume of measurement of photoperiod length (Pévet, 2000). This the pineal and showed the characteristics of typical gland probably signals the enviromental conditions thus pinealocytes. Many processes, some of which were filled making mammals seasonal breeders (Reiter, 1981). The with vesicles, could be seen in intimate contact with the pineal has been thoroughly investigated; however, the neighbouring cells. The presence in the winter samples number of species in which its ultrastructure have been of “synaptic” ribbons and spherules, which were almost studied is a meager 1.5-2% of all mammalians absent in the summer pineals, suggests a seasonal (Bhatnagar, 1992). Previous studies have focused on rhythm. These synaptic-like structures, as well as the domestic and laboratory animals housed in artificially abundant subsurface cisterns present in type I cells, controlled conditions. -
45763089029.Pdf
Mastozoología Neotropical ISSN: 0327-9383 ISSN: 1666-0536 [email protected] Sociedad Argentina para el Estudio de los Mamíferos Argentina Frugone, María José; Correa, Loreto A; Sobrero, Raúl ACTIVITY AND GROUP-LIVING IN THE PORTER’S ROCK RATS, Aconaemys porteri Mastozoología Neotropical, vol. 26, núm. 2, 2019, Julio-, pp. 487-492 Sociedad Argentina para el Estudio de los Mamíferos Tucumán, Argentina Disponible en: http://www.redalyc.org/articulo.oa?id=45763089029 Cómo citar el artículo Número completo Sistema de Información Científica Redalyc Más información del artículo Red de Revistas Científicas de América Latina y el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto Mastozoología Neotropical, 26(2):487-492 Mendoza, 2019 Copyright © SAREM, 2019 Versión on-line ISSN 1666-0536 hp://www.sarem.org.ar hps://doi.org/10.31687/saremMN.19.26.2.0.05 hp://www.sbmz.org Nota ACTIVITY AND GROUP-LIVING IN THE PORTER’S ROCK RATS, Aconaemys porteri María José Frugone1, Loreto A. Correa2,3 and Raúl Sobrero4 1Instituto de Ecología y Biodiversidad, Departamento de Ciencias Ecológicas, Facultad de Ciencias, Universidad de Chile, Santiago, Chile. 2Escuela de Medicina Veterinaria, Facultad de Ciencias. Universidad Mayor, Santiago, Chile. 3Departamento de Ecología, Facultad de Ciencias, Ponticia Universidad Católica de Chile. 4Laboratorio de Ecología de Enfermedades, Instituto de Ciencias Veterinarias del Litoral (ICiVet-Litoral), Universidad Nacional del Litoral (UNL) / Consejo Nacional de Investigaciones Cientícas y Técnicas (CONICET), Esperanza, Argentina. [Correspondence: Raúl Sobrero <[email protected]>] ABSTRACT. We provide the rst systematic data on behavior and ecology of Aconaemys porteri. -
Dromiciops Gliroides MICROBIOTHERIA: MICROBIOTHERIIDAE) in ITS SOUTHERNMOST POPULATION of ARGENTINA Mastozoología Neotropical, Vol
Mastozoología Neotropical ISSN: 0327-9383 ISSN: 1666-0536 [email protected] Sociedad Argentina para el Estudio de los Mamíferos Argentina Sanchez, Juliana P.; Gurovich, Yamila FLEAS (INSECTA: SIPHONAPTERA) ASSOCIATED TO THE ENDANGERED NEOTROPICAL MARSUPIAL MONITO DEL MONTE (Dromiciops gliroides MICROBIOTHERIA: MICROBIOTHERIIDAE) IN ITS SOUTHERNMOST POPULATION OF ARGENTINA Mastozoología Neotropical, vol. 25, no. 1, 2018, January-June, pp. 257-262 Sociedad Argentina para el Estudio de los Mamíferos Argentina Available in: https://www.redalyc.org/articulo.oa?id=45758865023 How to cite Complete issue Scientific Information System Redalyc More information about this article Network of Scientific Journals from Latin America and the Caribbean, Spain and Journal's webpage in redalyc.org Portugal Project academic non-profit, developed under the open access initiative Mastozoología Neotropical, 25(1):257-262, Mendoza, 2018 Copyright ©SAREM, 2018 http://www.sarem.org.ar Versión on-line ISSN 1666-0536 http://www.sbmz.com.br Nota FLEAS (INSECTA: SIPHONAPTERA) ASSOCIATED TO THE ENDANGERED NEOTROPICAL MARSUPIAL MONITO DEL MONTE (Dromiciops gliroides MICROBIOTHERIA: MICROBIOTHERIIDAE) IN ITS SOUTHERNMOST POPULATION OF ARGENTINA Juliana P. Sanchez1 and Yamila Gurovich2, 3 1 Centro de Investigaciones y Transferencia del Noroeste de la Provincia de Buenos Aires, CITNOBA (CONICET- UNNOBA) Pergamino, Buenos Aires, Argentina. [Correspondence: <[email protected]>] 2 CIEMEP, CONICET-UNPSJB, Esquel, Chubut, Argentina. 3 Department of Anatomy, School of Medical Sciences, The University of New South Wales, 2052 New South Wales, Australia ABSTRACT. Dromiciops gliroides is a nocturnal marsupial endemic to the temperate forests of southern South America and the only living representative of the Order Microbiotheria. Here we study the Siphonapteran fauna of the “monito del monte” from Los Alerces National Park, Chubut Province. -
Hystrx It. J. Mamm. (Ns) Supp. (2007) V European Congress of Mammalogy
Hystrx It. J. Mamm . (n.s.) Supp. (2007) V European Congress of Mammalogy RODENTS AND LAGOMORPHS 51 Hystrx It. J. Mamm . (n.s.) Supp. (2007) V European Congress of Mammalogy 52 Hystrx It. J. Mamm . (n.s.) Supp. (2007) V European Congress of Mammalogy A COMPARATIVE GEOMETRIC MORPHOMETRIC ANALYSIS OF NON-GEOGRAPHIC VARIATION IN TWO SPECIES OF MURID RODENTS, AETHOMYS INEPTUS FROM SOUTH AFRICA AND ARVICANTHIS NILOTICUS FROM SUDAN EITIMAD H. ABDEL-RAHMAN 1, CHRISTIAN T. CHIMIMBA, PETER J. TAYLOR, GIANCARLO CONTRAFATTO, JENNIFER M. LAMB 1 Sudan Natural History Museum, Faculty of Science, University of Khartoum P. O. Box 321 Khartoum, Sudan Non-geographic morphometric variation particularly at the level of sexual dimorphism and age variation has been extensively documented in many organisms including rodents, and is useful for establishing whether to analyse sexes separately or together and for selecting adult specimens to consider for subsequent data recording and analysis. However, such studies have largely been based on linear measurement-based traditional morphometric analyses that mainly focus on the partitioning of overall size- rather than shape-related morphological variation. Nevertheless, recent advances in unit-free, landmark/outline-based geometric morphometric analyses offer a new tool to assess shape-related morphological variation. In the present study, we used geometric morphometric analysis to comparatively evaluate non-geographic variation in two geographically disparate murid rodent species, Aethmoys ineptus from South Africa and Arvicanthis niloticus from Sudan , the results of which are also compared with previously published results based on traditional morphometric data. Our results show that while the results of the traditional morphometric analyses of both species were congruent, they were not sensitive enough to detect some signals of non-geographic morphological variation. -
Comparative Ecology of the Caviomorph Rodent Octodon Degus in Two Chilean Mediterranean-Type Communities
Revista Chilena de Historia Natural 57: 79-89, 1984 Comparative Ecology of the Caviomorph Rodent Octodon degus in Two Chilean Mediterranean-type Communities Ecologfa comparativa del roedor caviomorfo Octodon degus en dos comunidades mediterráneas de Chile PETER L. MESERVE, ROBERT E. MARTIN and JAIME RODRIGUEZ Department of Biological Sciences, Northern Illinois University, DeKalb, IL 60115, USA; Department of Biology, University of Mary Hardin-Baylor, Belton, TX 76513, USA; and Facultad de Ciencias Agrarias, Veterinarias y Forestales, Universidad de Chile, Casilla 9206, Santiago, Chile RESUMEN El degu (Octodon degus) es el roedor caviomorfo más común que se encuentra en las comunidades de tipo mediterráneo de Chile. Entre 1973 y 1976 se desarrollaron dos estudios sobre el degu; uno de ellos se centro en la zona norte de Chile (Fray Jorge) y el otro en una sabana mediterránea de Chile central (La Dehesa). Aun cuando no fueron simultaneos, en ambos estudios se utilizaron similares metodologias y análisis, permitiendo de este modo la comparacion de resultados sobre tendencias poblacionales, reproducci6n, hábitos alimenticios y caracteristicas de asociaci6n al hábitat. Se observaron densidades máximas de 59-65 individuos/ha en octubre-noviembre como resultado del reclutamiento de juveniles a la poblacion en ambos sitios. Los decrecimientos poblacionales durante los meses de verano se debieron fundamentalmente a la desaparici6n de los juveniles. El apareamiento se desarrollo principalmente en agosto-octubre, con la concepcion en mayo-junio; un segundo episodio reproductivo, que refleja la presencia de estro postparto, ocurri6 en la poblaci6n de La Dehesa en diciembre-enero. El ta- mafio de la camada fue identico en ambas poblaciones. -
Vigilance and Social Foraging in Octodon Degus (Rodentia: Octodontidae) in Central Chile
Revista Chilena de Historia Natural 70: 557-563, 1997 Vigilance and social foraging in Octodon degus (Rodentia: Octodontidae) in central Chile Vigilancia y forrajeo social en Octodon degus (Rodentia: Octodontidae) en Chile central ROD RI GO A. V ASQUEZ Departamento de Ciencias Eco16gicas, Facultad de Ciencias, Universidad de Chile, Casilla 653, Santiago, Chile. E-mail: rvasquez@ abello.dic. uchile.cl ABSTRACT Social foragers frequently show diminishing levels of per capita vigilance as the group size increases. This phenomenon, called the "group size effect", was studied in a natural population of the caviomorph rodent Octodon degus. Through field observations of groups of different size, I quantified the duration of bouts of vigilance and foraging. Results showed that degus spent significantly less time being vigilant as group size increased, which agrees with the group size effect. The reduction in vigilance was achieved through a decrease in the duration of vigilance bouts as well as in scanning rate. Further, foraging bouts of group members lasted longer with increasing group size. Total group vigilance also increased with group size. Degus adjusted their behavior in similar manner to that of other social feeding species. Time saved from vigilance was allocated to foraging. Group foraging may confer anti-predator as well as short-term feeding advantages to 0. degus. Further studies in this area of research may help to understand the evolution of sociality in this species. Key words: Anti-predator behavior, foraging, group size, Octodon degus, sociality. RESUMEN Con frecuencia, animales que forrajean socialmente muestran niveles menores de vigilancia individual a medida que crece el tamaiio del grupo.